Wall clock time and date at job start Sat Apr 11 2020 01:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.27923 * 126.61024 * 2 1 4 4 N 1.39148 * 113.21636 * 180.11120 * 3 2 1 5 5 C 1.39886 * 124.43579 * 179.97438 * 4 3 2 6 6 C 1.38991 * 119.95233 * 179.68190 * 5 4 3 7 7 C 1.37863 * 120.04552 * 179.76840 * 6 5 4 8 8 C 1.39367 * 119.95482 * 0.53573 * 7 6 5 9 9 C 1.48413 * 120.04876 * 179.70427 * 8 7 6 10 10 N 1.34064 * 126.67737 * 180.02562 * 9 8 7 11 11 N 1.28992 * 107.26765 * 179.97438 * 10 9 8 12 12 N 1.28735 * 108.94716 * 0.02562 * 11 10 9 13 13 H 0.96991 * 125.33882 * 180.02562 * 12 11 10 14 14 N 1.28877 * 109.32166 * 359.75954 * 12 11 10 15 15 C 1.39373 * 119.90915 * 359.71610 * 8 7 6 16 16 C 1.37871 * 119.95229 * 0.02562 * 15 8 7 17 17 C 1.34948 * 111.12058 * 359.90431 * 4 3 2 18 18 O 1.21303 * 127.49983 * 179.97438 * 17 4 3 19 19 C 1.51442 * 126.41450 * 179.97438 * 2 1 3 20 20 H 1.09008 * 110.61009 * 61.30707 * 19 2 1 21 21 C 1.52997 * 110.61104 * 298.49048 * 19 2 1 22 22 C 1.50694 * 109.47460 * 177.15145 * 21 19 2 23 23 H 1.08002 * 120.00179 * 359.97438 * 22 21 19 24 24 C 1.37879 * 120.00472 * 180.02562 * 22 21 19 25 25 N 1.31514 * 119.99350 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00608 * 179.97438 * 24 22 21 27 27 H 1.48490 * 109.47339 * 179.97438 * 26 24 22 28 28 H 1.48493 * 109.47239 * 300.00306 * 26 24 22 29 29 H 1.48504 * 109.46636 * 59.99865 * 26 24 22 30 30 H 1.09001 * 109.46804 * 270.03959 * 1 2 3 31 31 H 1.08997 * 109.46842 * 30.04223 * 1 2 3 32 32 H 1.08997 * 109.46877 * 150.04379 * 1 2 3 33 33 H 1.08000 * 119.97406 * 0.02562 * 6 5 4 34 34 H 1.08003 * 120.02039 * 180.25302 * 7 6 5 35 35 H 1.08002 * 120.02625 * 179.97438 * 15 8 7 36 36 H 1.07992 * 119.97643 * 179.97438 * 16 15 8 37 37 H 1.09005 * 109.46800 * 57.15616 * 21 19 2 38 38 H 1.08998 * 109.47382 * 297.15415 * 21 19 2 39 39 H 0.97005 * 119.99661 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2699 1.0269 0.0000 4 7 3.6235 0.7045 -0.0025 5 6 4.6603 1.6436 -0.0035 6 6 5.9831 1.2170 0.0007 7 6 7.0064 2.1408 -0.0052 8 6 6.7138 3.5034 -0.0040 9 6 7.8137 4.4997 -0.0037 10 7 7.6854 5.8342 -0.0021 11 7 8.8749 6.3333 -0.0018 12 7 9.7314 5.3722 -0.0037 13 1 10.6953 5.4798 -0.0036 14 7 9.1072 4.2447 -0.0001 15 6 5.3867 3.9292 -0.0029 16 6 4.3663 3.0020 -0.0024 17 6 3.8050 -0.6327 -0.0022 18 8 4.8579 -1.2350 -0.0044 19 6 2.4060 -1.2187 0.0005 20 1 2.2396 -1.8187 -0.8942 21 6 2.1760 -2.0571 1.2595 22 6 3.0307 -3.2968 1.2007 23 1 3.6734 -3.4698 0.3501 24 6 2.9915 -4.2109 2.2322 25 7 2.2085 -4.0005 3.2676 26 14 4.0504 -5.7480 2.1589 27 1 3.8272 -6.5616 3.3809 28 1 3.6850 -6.5442 0.9600 29 1 5.4815 -5.3597 2.0779 30 1 -0.3633 0.0007 1.0277 31 1 -0.3633 0.8896 -0.5145 32 1 -0.3633 -0.8904 -0.5131 33 1 6.2094 0.1610 0.0043 34 1 8.0341 1.8088 -0.0061 35 1 5.1577 4.9847 -0.0016 36 1 3.3378 3.3315 -0.0012 37 1 1.1257 -2.3425 1.3191 38 1 2.4441 -1.4724 2.1395 39 1 2.1806 -4.6438 3.9932 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603828371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:36:43 Heat of formation + Delta-G solvation = 150.513168 kcal Electronic energy + Delta-G solvation = -26084.346507 eV Core-core repulsion = 22223.676841 eV Total energy + Delta-G solvation = -3860.669666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.123 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.46535 -42.75997 -40.14090 -38.72089 -36.27047 -35.38291 -34.96465 -33.98553 -32.32489 -32.13684 -31.24409 -28.95519 -27.96720 -25.78003 -25.60197 -24.42402 -23.63879 -22.74215 -21.52503 -20.74603 -20.17935 -19.10561 -18.34351 -18.14691 -17.67656 -17.37724 -16.63070 -16.45275 -16.13276 -15.57282 -15.33295 -14.98044 -14.73750 -14.57673 -14.42523 -14.38318 -14.15371 -13.86659 -13.52029 -13.36901 -13.23064 -13.09951 -13.07456 -12.78976 -12.64739 -12.43204 -12.40014 -12.17242 -12.06320 -11.90743 -11.59872 -11.31303 -10.66759 -10.63904 -10.45076 -10.12645 -8.97542 -8.23305 -6.30851 -0.46542 0.13574 0.27463 0.54714 1.06619 1.15359 1.38099 1.41240 1.41620 1.48769 1.68629 2.39749 2.63756 2.74076 2.80733 3.11962 3.13370 3.14362 3.72214 3.85494 3.92914 4.10412 4.18577 4.24834 4.34146 4.38472 4.48386 4.59899 4.74729 4.89765 4.91551 4.99961 5.05564 5.25289 5.29109 5.31799 5.34029 5.37029 5.53512 5.61048 5.74185 5.79881 6.12186 6.53024 6.70637 6.80471 7.10396 7.37214 8.87515 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.016112 B = 0.002891 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.400289 B = 9681.989251 C =11060.290130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.140 3.860 3 N -0.266 5.266 4 N -0.428 5.428 5 C 0.180 3.820 6 C -0.177 4.177 7 C -0.043 4.043 8 C -0.053 4.053 9 C 0.219 3.781 10 N -0.290 5.290 11 N -0.054 5.054 12 N -0.200 5.200 13 H 0.494 0.506 14 N -0.300 5.300 15 C -0.040 4.040 16 C -0.134 4.134 17 C 0.496 3.504 18 O -0.500 6.500 19 C -0.134 4.134 20 H 0.143 0.857 21 C 0.066 3.934 22 C -0.533 4.533 23 H 0.055 0.945 24 C 0.011 3.989 25 N -0.925 5.925 26 Si 0.952 3.048 27 H -0.279 1.279 28 H -0.262 1.262 29 H -0.283 1.283 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.136 0.864 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.046 0.954 38 H -0.014 1.014 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.190 17.791 -8.506 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.051 4.051 3 N -0.072 5.072 4 N -0.236 5.236 5 C 0.086 3.914 6 C -0.198 4.198 7 C -0.063 4.063 8 C -0.057 4.057 9 C -0.060 4.060 10 N -0.162 5.162 11 N -0.049 5.049 12 N -0.051 5.051 13 H 0.353 0.647 14 N -0.152 5.152 15 C -0.061 4.061 16 C -0.154 4.154 17 C 0.286 3.714 18 O -0.372 6.372 19 C -0.158 4.158 20 H 0.161 0.839 21 C 0.028 3.972 22 C -0.571 4.571 23 H 0.073 0.927 24 C -0.187 4.187 25 N -0.565 5.565 26 Si 0.778 3.222 27 H -0.204 1.204 28 H -0.186 1.186 29 H -0.209 1.209 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.154 0.846 34 H 0.167 0.833 35 H 0.180 0.820 36 H 0.172 0.828 37 H 0.065 0.935 38 H 0.004 0.996 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.164 19.021 -8.348 21.668 hybrid contribution 1.375 -2.320 0.387 2.724 sum 7.539 16.702 -7.961 19.979 Atomic orbital electron populations 1.20663 0.80692 1.06437 1.05557 1.26394 0.99298 0.89164 0.90267 1.74827 0.86586 1.26478 1.19322 1.47266 1.03903 1.05438 1.67004 1.18192 0.85724 0.89433 0.98097 1.21349 0.90618 1.02095 1.05732 1.20991 0.99596 0.90552 0.95190 1.17269 0.89752 0.89733 1.08955 1.23562 0.90057 0.90713 1.01714 1.76060 1.14067 1.07092 1.19001 1.78830 0.93658 1.17458 1.14957 1.47765 1.13681 0.99648 1.44022 0.64657 1.74938 1.06789 1.11213 1.22294 1.21157 0.89554 1.00925 0.94462 1.20894 1.01491 0.89056 1.03982 1.21919 0.92674 0.82230 0.74608 1.90603 1.32214 1.66508 1.47905 1.22054 0.90359 0.97808 1.05560 0.83947 1.18640 0.98342 0.92269 0.87934 1.21440 1.24613 1.05657 1.05438 0.92667 1.25710 0.96680 1.01341 0.95007 1.70024 1.39750 1.37556 1.09179 0.85688 0.78931 0.79560 0.78043 1.20416 1.18621 1.20891 0.88095 0.87120 0.87311 0.84635 0.83254 0.82045 0.82770 0.93540 0.99555 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.49 71.24 0.75 -0.66 16 2 C 0.14 4.19 6.96 46.78 0.33 4.52 16 3 N -0.27 -8.67 11.19 -40.67 -0.46 -9.12 16 4 N -0.43 -16.17 3.72 -302.13 -1.12 -17.30 16 5 C 0.18 6.17 6.66 38.22 0.25 6.42 16 6 C -0.18 -6.02 9.33 22.36 0.21 -5.81 16 7 C -0.04 -1.18 9.69 22.45 0.22 -0.96 16 8 C -0.05 -1.35 5.88 -20.02 -0.12 -1.47 16 9 C 0.22 5.23 7.93 137.35 1.09 6.32 16 10 N -0.29 -6.85 12.23 -52.20 -0.64 -7.49 16 11 N -0.05 -1.04 13.47 37.02 0.50 -0.54 16 12 N -0.20 -2.79 7.90 37.02 0.29 -2.50 16 13 H 0.49 1.75 8.96 -347.54 -3.12 -1.36 16 14 N -0.30 -6.09 12.08 -52.15 -0.63 -6.72 16 15 C -0.04 -0.97 9.69 22.46 0.22 -0.75 16 16 C -0.13 -3.67 9.60 22.36 0.21 -3.46 16 17 C 0.50 21.59 7.44 87.94 0.65 22.25 16 18 O -0.50 -24.73 14.08 -3.10 -0.04 -24.77 16 19 C -0.13 -5.22 2.98 -11.74 -0.03 -5.26 16 20 H 0.14 5.07 8.14 -2.38 -0.02 5.05 16 21 C 0.07 3.21 4.50 29.85 0.13 3.34 16 22 C -0.53 -29.60 8.39 25.60 0.21 -29.39 16 23 H 0.06 3.12 7.24 -2.91 -0.02 3.09 16 24 C 0.01 0.64 5.46 84.66 0.46 1.10 16 25 N -0.93 -54.05 13.29 21.45 0.28 -53.77 16 26 Si 0.95 44.86 29.54 68.60 2.03 46.89 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 28 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 29 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 30 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.14 5.34 5.33 -2.91 -0.02 5.32 16 34 H 0.15 3.63 7.88 -2.91 -0.02 3.61 16 35 H 0.16 3.13 7.88 -2.91 -0.02 3.11 16 36 H 0.15 3.81 7.59 -2.91 -0.02 3.79 16 37 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 38 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 Total: -1.00 -74.91 345.85 2.81 -72.10 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -1.99 Total: 7.03 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 4.59 Total: -3.80 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -1.77 Total: -97.44 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.04 Total: -24.77 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -74.91 2.81 -72.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603828371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.612 kcal (2) G-P(sol) polarization free energy of solvation -74.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds