Wall clock time and date at job start Sat Apr 11 2020 01:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37653 * 119.98292 * 2 1 4 4 C 1.39778 * 119.96350 * 180.02562 * 3 2 1 5 5 C 1.47603 * 120.03166 * 179.97438 * 4 3 2 6 6 O 1.21614 * 119.99895 * 356.83338 * 5 4 3 7 7 N 1.34770 * 120.00118 * 176.83429 * 5 4 3 8 8 C 1.36841 * 120.00259 * 203.42922 * 7 5 4 9 9 H 1.07996 * 120.00048 * 335.41174 * 8 7 5 10 10 C 1.39064 * 120.00318 * 155.40854 * 8 7 5 11 11 N 1.31355 * 119.99727 * 342.00798 * 10 8 7 12 12 Si 1.86800 * 120.00018 * 162.00201 * 10 8 7 13 13 H 1.48499 * 109.47280 * 90.00309 * 12 10 8 14 14 H 1.48507 * 109.46865 * 210.00151 * 12 10 8 15 15 H 1.48497 * 109.47088 * 329.99792 * 12 10 8 16 16 C 1.46506 * 119.99996 * 23.15237 * 7 5 4 17 17 C 1.47203 * 109.47025 * 263.65691 * 16 7 5 18 18 N 5.75846 * 162.64552 * 96.11146 * 2 1 3 19 19 C 1.39772 * 119.93308 * 0.25807 * 4 3 2 20 20 C 1.37653 * 119.96192 * 359.46291 * 19 4 3 21 21 C 1.50701 * 119.98189 * 180.27794 * 20 19 4 22 22 C 1.39485 * 120.03707 * 0.55949 * 20 19 4 23 23 C 1.48347 * 119.96572 * 179.71911 * 22 20 19 24 24 N 1.34092 * 126.67961 * 180.02562 * 23 22 20 25 25 N 1.28990 * 107.26199 * 179.97438 * 24 23 22 26 26 N 1.28722 * 108.95855 * 0.02562 * 25 24 23 27 27 H 0.96999 * 125.33287 * 180.02562 * 26 25 24 28 28 N 1.28874 * 109.33285 * 359.76487 * 26 25 24 29 29 H 1.08999 * 109.47621 * 89.99483 * 1 2 3 30 30 H 1.08997 * 109.47504 * 209.99971 * 1 2 3 31 31 H 1.08999 * 109.47186 * 329.99742 * 1 2 3 32 32 H 1.07994 * 120.01864 * 0.04543 * 3 2 1 33 33 H 0.97005 * 119.99769 * 180.02562 * 11 10 8 34 34 H 1.09002 * 109.47137 * 23.64924 * 16 7 5 35 35 H 1.08993 * 109.47242 * 143.65262 * 16 7 5 36 36 H 1.07996 * 120.01325 * 179.74874 * 19 4 3 37 37 H 1.09001 * 109.47121 * 270.28668 * 21 20 19 38 38 H 1.09007 * 109.46928 * 30.28264 * 21 20 19 39 39 H 1.08995 * 109.47131 * 150.27918 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1923 0.0000 4 6 3.5927 1.1918 -0.0005 5 6 4.3318 2.4695 -0.0011 6 8 3.7260 3.5224 -0.0593 7 7 5.6780 2.4692 0.0628 8 6 6.3408 3.5691 0.5355 9 1 5.8764 4.5428 0.4842 10 6 7.6123 3.4332 1.0820 11 7 8.0370 2.2528 1.4714 12 14 8.7163 4.9292 1.2620 13 1 8.4850 5.5586 2.5870 14 1 10.1374 4.5116 1.1538 15 1 8.4045 5.9066 0.1884 16 6 6.4316 1.2890 -0.3681 17 6 6.7543 0.4583 0.8035 18 7 7.0033 -0.1829 1.7079 19 6 4.2897 -0.0197 -0.0065 20 6 3.5989 -1.2103 -0.0007 21 6 4.3500 -2.5168 -0.0009 22 6 2.2040 -1.2082 -0.0006 23 6 1.4612 -2.4923 -0.0007 24 7 0.1292 -2.6471 -0.0011 25 7 -0.1088 -3.9148 -0.0015 26 7 1.0105 -4.5505 -0.0008 27 1 1.1075 -5.5156 -0.0013 28 7 1.9820 -3.7037 -0.0049 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6549 2.1276 0.0007 33 1 8.9238 2.1580 1.8529 34 1 5.8305 0.7102 -1.0693 35 1 7.3542 1.6048 -0.8548 36 1 5.3696 -0.0215 -0.0111 37 1 4.5311 -2.8316 -1.0286 38 1 5.3027 -2.3882 0.5130 39 1 3.7596 -3.2753 0.5130 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605594352.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:36:48 Heat of formation + Delta-G solvation = 213.842034 kcal Electronic energy + Delta-G solvation = -27386.127271 eV Core-core repulsion = 23528.203750 eV Total energy + Delta-G solvation = -3857.923520 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.123 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.48958 -40.17995 -38.25515 -36.25542 -34.60416 -34.19824 -33.80278 -33.21410 -32.05853 -30.86690 -28.14890 -27.48354 -26.27660 -25.69971 -24.44733 -23.93859 -21.79955 -20.66422 -19.40535 -19.16064 -18.13850 -17.19906 -16.63934 -16.47004 -16.28889 -15.38471 -14.78776 -14.37794 -14.25546 -14.04619 -13.94449 -13.58255 -13.28781 -13.07644 -12.99176 -12.71764 -12.36273 -12.12368 -12.00385 -11.73233 -11.56445 -11.45182 -11.32992 -11.28840 -11.13237 -11.02341 -10.84705 -10.57090 -10.55547 -10.52229 -10.36993 -10.21413 -9.35909 -8.84862 -8.33343 -8.30053 -8.08587 -6.56288 -4.14693 0.65439 1.12594 1.63051 2.17994 2.26913 3.05969 3.15443 3.20949 3.47912 3.69203 3.74984 3.93621 4.09798 4.20947 4.31166 4.66454 4.79943 4.95167 5.05095 5.15078 5.27148 5.38349 5.41826 5.62613 5.67556 5.78736 5.84667 5.86082 5.92865 5.93757 6.07430 6.10256 6.24454 6.26635 6.44457 6.58566 6.68317 6.73142 6.77103 7.13830 7.34054 7.79784 8.11769 8.16806 8.82754 8.98294 9.02806 9.54531 10.40531 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.022946 B = 0.003626 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.982987 B = 7719.581496 C = 8746.164172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.044 4.044 3 C -0.087 4.087 4 C -0.075 4.075 5 C 0.501 3.499 6 O -0.560 6.560 7 N -0.439 5.439 8 C -0.308 4.308 9 H 0.111 0.889 10 C 0.030 3.970 11 N -0.865 5.865 12 Si 0.936 3.064 13 H -0.276 1.276 14 H -0.281 1.281 15 H -0.266 1.266 16 C 0.206 3.794 17 C 0.249 3.751 18 N -0.463 5.463 19 C -0.159 4.159 20 C -0.039 4.039 21 C -0.127 4.127 22 C -0.037 4.037 23 C 0.237 3.763 24 N -0.269 5.269 25 N -0.059 5.059 26 N -0.234 5.234 27 H 0.472 0.528 28 N -0.294 5.294 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.140 0.860 33 H 0.279 0.721 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.174 0.826 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.253 -12.290 -6.034 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.047 4.047 3 C -0.106 4.106 4 C -0.079 4.079 5 C 0.291 3.709 6 O -0.442 6.442 7 N -0.158 5.158 8 C -0.435 4.435 9 H 0.128 0.872 10 C -0.174 4.174 11 N -0.503 5.503 12 Si 0.761 3.239 13 H -0.202 1.202 14 H -0.206 1.206 15 H -0.190 1.190 16 C 0.079 3.921 17 C -0.068 4.068 18 N -0.147 5.147 19 C -0.177 4.177 20 C -0.042 4.042 21 C -0.184 4.184 22 C -0.041 4.041 23 C -0.042 4.042 24 N -0.142 5.142 25 N -0.053 5.053 26 N -0.079 5.079 27 H 0.325 0.675 28 N -0.145 5.145 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.158 0.842 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.190 0.810 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.523 -13.109 -4.654 16.314 hybrid contribution 1.185 0.527 0.004 1.297 sum -7.338 -12.582 -4.650 15.290 Atomic orbital electron populations 1.21165 0.90079 1.04112 1.02986 1.19789 0.96554 0.91079 0.97229 1.21021 0.92783 0.97650 0.99138 1.20578 0.94301 0.94167 0.98880 1.18034 0.82109 0.87948 0.82791 1.90632 1.67658 1.32877 1.53071 1.43375 1.03392 1.13150 1.55873 1.19747 0.98819 0.88035 1.36854 0.87154 1.25458 0.98515 0.98489 0.94907 1.69316 1.20031 1.22674 1.38297 0.85768 0.78443 0.80516 0.79142 1.20185 1.20641 1.19015 1.19388 0.98498 0.85433 0.88813 1.28009 0.92240 0.91389 0.95113 1.80859 1.09592 1.15950 1.08262 1.23023 1.03295 0.90839 1.00565 1.19827 0.91480 0.96199 0.96673 1.21156 1.00377 0.94114 1.02708 1.17182 0.91322 0.86433 1.09173 1.23742 0.87973 0.92283 1.00154 1.76157 1.13804 1.05591 1.18636 1.78875 1.11349 1.00516 1.14591 1.47854 1.01441 1.12429 1.46223 0.67453 1.75190 1.16432 0.99904 1.23021 0.90997 0.88542 0.91608 0.84243 0.90924 0.87948 0.87468 0.81014 0.90995 0.91236 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.18 36.00 0.33 -1.31 16 2 C -0.04 -0.69 5.90 -104.37 -0.62 -1.30 16 3 C -0.09 -1.52 9.23 -39.22 -0.36 -1.88 16 4 C -0.07 -1.45 5.81 -104.93 -0.61 -2.06 16 5 C 0.50 11.51 7.35 -12.44 -0.09 11.41 16 6 O -0.56 -14.32 16.19 5.27 0.09 -14.23 16 7 N -0.44 -10.12 2.60 -130.33 -0.34 -10.46 16 8 C -0.31 -7.70 9.31 -15.01 -0.14 -7.83 16 9 H 0.11 2.88 7.45 -52.49 -0.39 2.49 16 10 C 0.03 0.73 5.01 -17.45 -0.09 0.64 16 11 N -0.87 -21.35 8.52 55.50 0.47 -20.87 16 12 Si 0.94 19.16 29.59 -169.99 -5.03 14.13 16 13 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 14 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 16 C 0.21 4.01 4.73 -6.82 -0.03 3.97 16 17 C 0.25 5.35 9.19 -20.75 -0.19 5.16 16 18 N -0.46 -10.75 18.14 38.03 0.69 -10.06 16 19 C -0.16 -2.82 7.17 -39.22 -0.28 -3.10 16 20 C -0.04 -0.63 5.90 -104.37 -0.62 -1.24 16 21 C -0.13 -1.73 9.18 36.01 0.33 -1.40 16 22 C -0.04 -0.58 5.88 -104.81 -0.62 -1.19 16 23 C 0.24 3.32 7.64 -156.27 -1.19 2.13 16 24 N -0.27 -3.63 9.06 32.14 0.29 -3.33 16 25 N -0.06 -0.66 13.47 60.35 0.81 0.15 16 26 N -0.23 -2.05 7.90 60.35 0.48 -1.58 16 27 H 0.47 1.76 8.96 -340.36 -3.05 -1.30 16 28 N -0.29 -3.47 8.93 32.16 0.29 -3.19 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.10 1.28 5.13 -51.93 -0.27 1.01 16 31 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.14 2.39 7.64 -52.49 -0.40 1.99 16 33 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.10 1.63 5.36 -51.93 -0.28 1.35 16 35 H 0.11 2.00 7.64 -51.93 -0.40 1.61 16 36 H 0.17 3.09 1.52 -95.85 -0.15 2.95 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.00 8.09 -51.92 -0.42 0.58 16 39 H 0.09 1.20 5.16 -51.93 -0.27 0.93 16 LS Contribution 326.82 15.07 4.93 4.93 Total: -1.00 -31.39 326.82 -7.52 -38.91 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.02 Total: 3.61 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -4.18 Total: 1.99 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 2.69 Total: -49.33 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.09 Total: -14.23 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.39 -7.52 -38.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605594352.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 252.749 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 221.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 213.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds