Wall clock time and date at job start Sat Apr 11 2020 01:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37653 * 119.98292 * 2 1 4 4 C 1.39778 * 119.96350 * 180.02562 * 3 2 1 5 5 C 1.47603 * 120.03166 * 179.97438 * 4 3 2 6 6 O 1.21614 * 119.99895 * 356.83338 * 5 4 3 7 7 N 1.34770 * 120.00118 * 176.83429 * 5 4 3 8 8 C 1.36841 * 120.00259 * 203.42922 * 7 5 4 9 9 H 1.07996 * 120.00048 * 335.41174 * 8 7 5 10 10 C 1.39064 * 120.00318 * 155.40854 * 8 7 5 11 11 N 1.31355 * 119.99727 * 342.00798 * 10 8 7 12 12 Si 1.86800 * 120.00018 * 162.00201 * 10 8 7 13 13 H 1.48499 * 109.47280 * 90.00309 * 12 10 8 14 14 H 1.48507 * 109.46865 * 210.00151 * 12 10 8 15 15 H 1.48497 * 109.47088 * 329.99792 * 12 10 8 16 16 C 1.46506 * 119.99996 * 23.15237 * 7 5 4 17 17 C 1.47203 * 109.47025 * 263.65691 * 16 7 5 18 18 N 5.75846 * 162.64552 * 96.11146 * 2 1 3 19 19 C 1.39772 * 119.93308 * 0.25807 * 4 3 2 20 20 C 1.37653 * 119.96192 * 359.46291 * 19 4 3 21 21 C 1.50701 * 119.98189 * 180.27794 * 20 19 4 22 22 C 1.39485 * 120.03707 * 0.55949 * 20 19 4 23 23 C 1.48347 * 119.96572 * 179.71911 * 22 20 19 24 24 N 1.34092 * 126.67961 * 180.02562 * 23 22 20 25 25 N 1.28990 * 107.26199 * 179.97438 * 24 23 22 26 26 N 1.28722 * 108.95855 * 0.02562 * 25 24 23 27 27 H 0.96999 * 125.33287 * 180.02562 * 26 25 24 28 28 N 1.28874 * 109.33285 * 359.76487 * 26 25 24 29 29 H 1.08999 * 109.47621 * 89.99483 * 1 2 3 30 30 H 1.08997 * 109.47504 * 209.99971 * 1 2 3 31 31 H 1.08999 * 109.47186 * 329.99742 * 1 2 3 32 32 H 1.07994 * 120.01864 * 0.04543 * 3 2 1 33 33 H 0.97005 * 119.99769 * 180.02562 * 11 10 8 34 34 H 1.09002 * 109.47137 * 23.64924 * 16 7 5 35 35 H 1.08993 * 109.47242 * 143.65262 * 16 7 5 36 36 H 1.07996 * 120.01325 * 179.74874 * 19 4 3 37 37 H 1.09001 * 109.47121 * 270.28668 * 21 20 19 38 38 H 1.09007 * 109.46928 * 30.28264 * 21 20 19 39 39 H 1.08995 * 109.47131 * 150.27918 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1923 0.0000 4 6 3.5927 1.1918 -0.0005 5 6 4.3318 2.4695 -0.0011 6 8 3.7260 3.5224 -0.0593 7 7 5.6780 2.4692 0.0628 8 6 6.3408 3.5691 0.5355 9 1 5.8764 4.5428 0.4842 10 6 7.6123 3.4332 1.0820 11 7 8.0370 2.2528 1.4714 12 14 8.7163 4.9292 1.2620 13 1 8.4850 5.5586 2.5870 14 1 10.1374 4.5116 1.1538 15 1 8.4045 5.9066 0.1884 16 6 6.4316 1.2890 -0.3681 17 6 6.7543 0.4583 0.8035 18 7 7.0033 -0.1829 1.7079 19 6 4.2897 -0.0197 -0.0065 20 6 3.5989 -1.2103 -0.0007 21 6 4.3500 -2.5168 -0.0009 22 6 2.2040 -1.2082 -0.0006 23 6 1.4612 -2.4923 -0.0007 24 7 0.1292 -2.6471 -0.0011 25 7 -0.1088 -3.9148 -0.0015 26 7 1.0105 -4.5505 -0.0008 27 1 1.1075 -5.5156 -0.0013 28 7 1.9820 -3.7037 -0.0049 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6549 2.1276 0.0007 33 1 8.9238 2.1580 1.8529 34 1 5.8305 0.7102 -1.0693 35 1 7.3542 1.6048 -0.8548 36 1 5.3696 -0.0215 -0.0111 37 1 4.5311 -2.8316 -1.0286 38 1 5.3027 -2.3882 0.5130 39 1 3.7596 -3.2753 0.5130 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605594352.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:36:47 Heat of formation + Delta-G solvation = 194.368700 kcal Electronic energy + Delta-G solvation = -27386.971698 eV Core-core repulsion = 23528.203750 eV Total energy + Delta-G solvation = -3858.767948 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.123 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.43292 -41.70186 -39.74938 -38.01550 -36.00651 -35.58696 -34.98396 -34.50631 -33.66430 -32.15561 -29.74921 -28.62182 -27.61466 -27.31513 -25.49090 -25.19944 -23.08423 -21.95598 -20.84360 -20.23725 -19.90307 -18.21085 -18.12029 -17.92392 -17.82600 -16.86818 -16.40732 -15.75701 -15.60999 -15.52989 -15.32600 -15.05341 -14.78530 -14.46135 -14.02942 -13.90611 -13.86268 -13.47174 -13.34163 -13.18628 -13.00186 -12.91933 -12.75346 -12.61616 -12.39560 -12.34462 -12.29691 -12.16027 -12.04968 -11.84372 -11.68442 -11.49109 -11.13790 -10.64422 -9.94691 -9.60159 -9.58888 -8.40146 -6.06744 -0.59745 0.17453 0.32075 1.05667 1.42857 1.46090 1.47149 1.59480 1.92829 2.08766 2.25950 2.41364 2.66130 2.77375 3.00467 3.02534 3.17382 3.55018 3.76225 3.77930 3.92856 4.15832 4.24366 4.35555 4.40222 4.45632 4.56442 4.68445 4.70335 4.83391 4.84852 4.88351 4.95384 5.23496 5.31742 5.36938 5.41613 5.46301 5.53688 5.74123 5.86073 5.98397 6.34157 6.98920 7.16737 7.21277 7.28031 7.74083 8.54316 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.022946 B = 0.003626 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.982987 B = 7719.581496 C = 8746.164172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.041 4.041 3 C -0.090 4.090 4 C -0.098 4.098 5 C 0.498 3.502 6 O -0.598 6.598 7 N -0.451 5.451 8 C -0.337 4.337 9 H 0.088 0.912 10 C 0.004 3.996 11 N -0.882 5.882 12 Si 0.996 3.004 13 H -0.283 1.283 14 H -0.272 1.272 15 H -0.262 1.262 16 C 0.206 3.794 17 C 0.263 3.737 18 N -0.495 5.495 19 C -0.160 4.160 20 C -0.042 4.042 21 C -0.121 4.121 22 C -0.029 4.029 23 C 0.217 3.783 24 N -0.282 5.282 25 N -0.057 5.057 26 N -0.202 5.202 27 H 0.493 0.507 28 N -0.286 5.286 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.277 0.723 34 H 0.140 0.860 35 H 0.114 0.886 36 H 0.170 0.830 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.960 -14.609 -6.661 18.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.043 4.043 3 C -0.110 4.110 4 C -0.103 4.103 5 C 0.289 3.711 6 O -0.483 6.483 7 N -0.170 5.170 8 C -0.465 4.465 9 H 0.106 0.894 10 C -0.198 4.198 11 N -0.520 5.520 12 Si 0.819 3.181 13 H -0.210 1.210 14 H -0.196 1.196 15 H -0.186 1.186 16 C 0.079 3.921 17 C -0.053 4.053 18 N -0.179 5.179 19 C -0.178 4.178 20 C -0.044 4.044 21 C -0.178 4.178 22 C -0.033 4.033 23 C -0.061 4.061 24 N -0.154 5.154 25 N -0.051 5.051 26 N -0.052 5.052 27 H 0.352 0.648 28 N -0.139 5.139 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.154 0.846 33 H 0.089 0.911 34 H 0.157 0.843 35 H 0.132 0.868 36 H 0.186 0.814 37 H 0.112 0.888 38 H 0.078 0.922 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.236 -15.479 -5.291 18.785 hybrid contribution 1.226 1.034 0.188 1.615 sum -8.010 -14.444 -5.104 17.287 Atomic orbital electron populations 1.21198 0.88061 1.04690 1.03956 1.20020 0.97920 0.90344 0.96050 1.21054 0.92105 0.98475 0.99330 1.20342 0.94937 0.93017 1.01975 1.18608 0.82262 0.88822 0.81382 1.90584 1.68474 1.34609 1.54611 1.43465 1.03697 1.13763 1.56086 1.19678 0.99829 0.88135 1.38808 0.89384 1.26088 0.98852 1.00825 0.94024 1.69411 1.20048 1.23909 1.38637 0.84884 0.77042 0.77644 0.78513 1.20956 1.19642 1.18623 1.19699 0.99195 0.84562 0.88608 1.28310 0.91205 0.90752 0.94995 1.80844 1.10868 1.17112 1.09072 1.22910 1.03057 0.90911 1.00967 1.20050 0.91939 0.96481 0.95945 1.21174 0.99600 0.92936 1.04072 1.17338 0.91358 0.87389 1.07185 1.23456 0.88308 0.92241 1.02126 1.76143 1.13548 1.06608 1.19110 1.78845 1.11705 0.99957 1.14633 1.47906 1.00307 1.13338 1.43672 0.64755 1.75105 1.17030 0.99545 1.22209 0.89701 0.88360 0.90621 0.84585 0.91119 0.84322 0.86813 0.81387 0.88815 0.92181 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 9.18 71.23 0.65 -2.29 16 2 C -0.04 -1.22 5.90 -19.70 -0.12 -1.34 16 3 C -0.09 -3.17 9.23 22.50 0.21 -2.96 16 4 C -0.10 -3.88 5.81 -20.06 -0.12 -3.99 16 5 C 0.50 23.62 7.35 86.72 0.64 24.26 16 6 O -0.60 -31.93 16.19 -4.08 -0.07 -32.00 16 7 N -0.45 -21.36 2.60 -684.52 -1.78 -23.14 16 8 C -0.34 -17.43 9.31 84.11 0.78 -16.64 16 9 H 0.09 4.84 7.45 -2.91 -0.02 4.81 16 10 C 0.00 0.20 5.01 84.96 0.43 0.63 16 11 N -0.88 -43.80 8.52 21.68 0.18 -43.62 16 12 Si 1.00 39.68 29.59 68.60 2.03 41.71 16 13 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 14 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 15 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 16 C 0.21 8.03 4.73 84.57 0.40 8.43 16 17 C 0.26 11.34 9.19 89.44 0.82 12.16 16 18 N -0.50 -23.01 18.14 6.92 0.13 -22.88 16 19 C -0.16 -5.60 7.17 22.50 0.16 -5.44 16 20 C -0.04 -1.27 5.90 -19.70 -0.12 -1.38 16 21 C -0.12 -3.01 9.18 71.24 0.65 -2.36 16 22 C -0.03 -0.85 5.88 -19.98 -0.12 -0.96 16 23 C 0.22 5.50 7.64 137.32 1.05 6.55 16 24 N -0.28 -6.81 9.06 -52.21 -0.47 -7.28 16 25 N -0.06 -1.09 13.47 37.02 0.50 -0.60 16 26 N -0.20 -2.78 7.90 37.02 0.29 -2.49 16 27 H 0.49 1.65 8.96 -347.53 -3.12 -1.46 16 28 N -0.29 -5.78 8.93 -52.16 -0.47 -6.25 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.10 2.39 5.13 -2.39 -0.01 2.38 16 31 H 0.07 1.66 8.08 -2.39 -0.02 1.65 16 32 H 0.14 4.78 7.64 -2.91 -0.02 4.76 16 33 H 0.28 13.44 8.31 -92.70 -0.77 12.67 16 34 H 0.14 4.34 5.36 -2.39 -0.01 4.33 16 35 H 0.11 4.25 7.64 -2.39 -0.02 4.24 16 36 H 0.17 5.97 1.52 -43.64 -0.07 5.91 16 37 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 1.63 8.09 -2.38 -0.02 1.61 16 39 H 0.10 2.31 5.16 -2.39 -0.01 2.30 16 Total: -1.00 -68.66 326.82 3.67 -64.99 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -2.01 Total: 16.91 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 5.33 Total: 14.65 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -1.61 Total: -106.26 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.07 Total: -32.00 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -68.66 3.67 -64.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605594352.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 259.358 kcal (2) G-P(sol) polarization free energy of solvation -68.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 194.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds