Wall clock time and date at job start Sat Apr 11 2020 01:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39731 * 125.77807 * 2 1 4 4 C 1.36150 * 107.85957 * 180.12913 * 3 2 1 5 5 N 1.39388 * 126.25989 * 179.87818 * 4 3 2 6 6 C 1.34773 * 120.00476 * 359.68660 * 5 4 3 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 4 8 8 C 1.47651 * 120.00028 * 179.72245 * 6 5 4 9 9 C 1.40195 * 120.41399 * 0.27927 * 8 6 5 10 10 N 1.31186 * 121.37791 * 179.97438 * 9 8 6 11 11 C 1.32933 * 121.84391 * 0.02562 * 10 9 8 12 12 N 1.36637 * 133.26751 * 180.02562 * 11 10 9 13 13 H 0.96995 * 125.34043 * 0.02562 * 12 11 10 14 14 N 1.39800 * 109.31501 * 180.02562 * 12 11 10 15 15 C 1.30195 * 110.13556 * 359.97438 * 14 12 11 16 16 C 1.41072 * 120.20685 * 0.02562 * 11 10 9 17 17 C 1.39525 * 120.40875 * 179.97438 * 8 6 5 18 18 N 1.35809 * 107.47173 * 359.61097 * 4 3 2 19 19 C 1.46494 * 126.08960 * 180.22482 * 18 4 3 20 20 C 1.50704 * 109.47242 * 90.00216 * 19 18 4 21 21 H 1.07994 * 119.99823 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00145 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00227 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99857 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.46813 * 90.00151 * 24 22 20 26 26 H 1.48500 * 109.47442 * 210.00006 * 24 22 20 27 27 H 1.48498 * 109.47416 * 330.00457 * 24 22 20 28 28 N 1.30833 * 125.78126 * 179.68449 * 2 1 3 29 29 H 1.08998 * 109.47358 * 270.28451 * 1 2 3 30 30 H 1.09002 * 109.47064 * 30.28785 * 1 2 3 31 31 H 1.09006 * 109.46842 * 150.28025 * 1 2 3 32 32 H 1.08002 * 126.07464 * 359.97438 * 3 2 1 33 33 H 0.97000 * 119.99411 * 179.68186 * 5 4 3 34 34 H 1.08007 * 119.31064 * 359.96766 * 9 8 6 35 35 H 1.08002 * 126.20137 * 180.02562 * 15 14 12 36 36 H 1.08001 * 121.02963 * 0.02562 * 17 8 6 37 37 H 1.09004 * 109.46668 * 210.00004 * 19 18 4 38 38 H 1.08996 * 109.47318 * 330.00010 * 19 18 4 39 39 H 0.97002 * 120.00169 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6194 0.7147 -0.0029 5 7 4.7496 1.5305 -0.0063 6 6 4.6130 2.8713 -0.0133 7 8 3.5038 3.3694 -0.0171 8 6 5.8103 3.7354 -0.0107 9 6 7.0933 3.1704 -0.0068 10 7 8.1698 3.9201 -0.0050 11 6 8.1000 5.2476 -0.0061 12 7 9.0444 6.2351 -0.0052 13 1 10.0040 6.0937 -0.0037 14 7 8.4105 7.4811 -0.0067 15 6 7.1178 7.3263 -0.0091 16 6 6.8453 5.8923 -0.0089 17 6 5.6788 5.1244 -0.0184 18 7 3.6088 -0.6433 0.0041 19 6 4.7859 -1.5154 0.0086 20 6 5.1895 -1.8071 1.4310 21 1 4.6258 -1.3848 2.2497 22 6 6.2783 -2.6133 1.6871 23 7 6.6303 -2.8683 2.9283 24 14 7.2529 -3.3444 0.2710 25 1 8.3452 -2.4135 -0.1108 26 1 7.8346 -4.6449 0.6897 27 1 6.3537 -3.5557 -0.8917 28 7 2.2720 -1.0614 0.0058 29 1 -0.3634 0.0051 1.0276 30 1 -0.3633 0.8874 -0.5183 31 1 -0.3633 -0.8925 -0.5095 32 1 1.9875 2.1599 -0.0004 33 1 5.6345 1.1332 -0.0036 34 1 7.1976 2.0953 -0.0053 35 1 6.3808 8.1158 -0.0110 36 1 4.7049 5.5914 -0.0260 37 1 4.5479 -2.4494 -0.5004 38 1 5.6076 -1.0193 -0.5077 39 1 7.3961 -3.4357 3.1085 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626415253.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:22 Heat of formation + Delta-G solvation = 152.584918 kcal Electronic energy + Delta-G solvation = -26265.561113 eV Core-core repulsion = 22404.981285 eV Total energy + Delta-G solvation = -3860.579828 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.123 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.99300 -40.95211 -39.51838 -37.97619 -34.94999 -33.82289 -33.54497 -32.20351 -31.07584 -30.82519 -29.47965 -28.22744 -26.33566 -24.68611 -24.24754 -22.56745 -22.27466 -21.48133 -19.91531 -19.66347 -18.71153 -17.66973 -17.22254 -17.09315 -16.23654 -16.10555 -15.83102 -15.22895 -15.11961 -14.61415 -14.39877 -14.08584 -13.90504 -13.78914 -13.39724 -13.16238 -12.95261 -12.74115 -12.62151 -12.36151 -11.92191 -11.87960 -11.61596 -11.21418 -11.11302 -10.85812 -10.56126 -10.32554 -10.25427 -9.88388 -9.77386 -9.57692 -9.51602 -8.92075 -8.87963 -7.98880 -7.54398 -6.35001 -4.39959 0.35923 0.44266 1.95047 2.00670 2.28143 2.60367 2.96658 3.05956 3.16107 3.17493 3.40461 3.59018 3.65344 3.83121 3.94691 4.12840 4.15104 4.40501 4.48780 4.76253 4.90628 4.91212 5.21658 5.26341 5.52054 5.64338 5.70983 5.96908 6.00171 6.01032 6.07591 6.18288 6.25649 6.33124 6.58451 6.62913 6.71176 6.87950 7.17890 7.37922 7.45840 7.47699 7.69357 8.08444 8.24212 8.52188 8.71349 9.19413 10.77085 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.010430 B = 0.003878 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.849822 B = 7218.880723 C = 9526.485092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 C -0.287 4.287 4 C 0.303 3.697 5 N -0.635 5.635 6 C 0.579 3.421 7 O -0.510 6.510 8 C -0.226 4.226 9 C 0.211 3.789 10 N -0.502 5.502 11 C 0.334 3.666 12 N -0.491 5.491 13 H 0.446 0.554 14 N -0.238 5.238 15 C 0.102 3.898 16 C -0.239 4.239 17 C 0.078 3.922 18 N -0.345 5.345 19 C 0.230 3.770 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.081 3.919 23 N -0.882 5.882 24 Si 0.869 3.131 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.263 1.263 28 N -0.279 5.279 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.165 0.835 33 H 0.413 0.587 34 H 0.173 0.827 35 H 0.207 0.793 36 H 0.159 0.841 37 H 0.056 0.944 38 H 0.035 0.965 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.552 17.738 -8.023 19.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C -0.319 4.319 4 C 0.082 3.918 5 N -0.281 5.281 6 C 0.366 3.634 7 O -0.385 6.385 8 C -0.233 4.233 9 C 0.040 3.960 10 N -0.216 5.216 11 C 0.093 3.907 12 N -0.208 5.208 13 H 0.292 0.708 14 N -0.050 5.050 15 C -0.097 4.097 16 C -0.250 4.250 17 C 0.049 3.951 18 N -0.130 5.130 19 C 0.111 3.889 20 C -0.586 4.586 21 H 0.100 0.900 22 C -0.124 4.124 23 N -0.518 5.518 24 Si 0.695 3.305 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.187 1.187 28 N -0.104 5.104 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.182 0.818 33 H 0.251 0.749 34 H 0.189 0.811 35 H 0.224 0.776 36 H 0.177 0.823 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.968 17.207 -7.893 19.033 hybrid contribution 0.533 -0.322 -0.408 0.745 sum 2.501 16.885 -8.301 18.980 Atomic orbital electron populations 1.20042 0.87384 1.02410 1.02354 1.22048 0.96619 0.90922 1.01512 1.21286 0.88906 1.00569 1.21105 1.17947 0.87862 0.83022 1.03014 1.42555 1.08317 1.05401 1.71861 1.17613 0.88556 0.80699 0.76554 1.90725 1.25705 1.73748 1.48310 1.20447 0.94191 0.94457 1.14238 1.23001 0.85677 0.99766 0.87525 1.66756 1.33283 1.02383 1.19179 1.19241 0.88541 0.88792 0.94140 1.45857 1.08585 1.00382 1.65981 0.70764 1.76740 1.08396 1.01491 1.18418 1.25181 0.93080 0.94373 0.97115 1.20461 0.94149 0.94684 1.15659 1.21160 0.98129 0.91077 0.84688 1.49057 1.06170 1.01836 1.55941 1.19945 0.79235 0.90055 0.99708 1.21194 1.14352 1.32722 0.90290 0.89996 1.24815 0.96605 0.95186 0.95751 1.69867 1.26813 1.36573 1.18548 0.86957 0.80835 0.79876 0.82846 1.19523 1.20341 1.18715 1.77356 0.85779 1.21767 1.25498 0.91122 0.91027 0.91496 0.81822 0.74928 0.81063 0.77598 0.82326 0.92659 0.94779 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.44 36.01 0.38 -0.51 16 2 C 0.05 1.04 7.20 -82.46 -0.59 0.45 16 3 C -0.29 -5.55 9.58 -39.77 -0.38 -5.93 16 4 C 0.30 6.03 7.68 -152.73 -1.17 4.86 16 5 N -0.63 -10.34 5.37 -12.25 -0.07 -10.40 16 6 C 0.58 8.55 7.74 -12.42 -0.10 8.45 16 7 O -0.51 -8.49 13.53 5.28 0.07 -8.42 16 8 C -0.23 -2.69 5.89 -104.84 -0.62 -3.31 16 9 C 0.21 2.46 10.69 -17.09 -0.18 2.28 16 10 N -0.50 -6.18 10.37 -12.02 -0.12 -6.30 16 11 C 0.33 3.77 8.47 -156.08 -1.32 2.45 16 12 N -0.49 -4.66 7.33 31.15 0.23 -4.43 16 13 H 0.45 3.19 8.96 -182.83 -1.64 1.55 16 14 N -0.24 -2.20 12.54 31.87 0.40 -1.80 16 15 C 0.10 0.78 12.30 -15.15 -0.19 0.59 16 16 C -0.24 -2.38 6.36 -105.20 -0.67 -3.05 16 17 C 0.08 0.79 9.76 -38.57 -0.38 0.41 16 18 N -0.34 -7.66 3.62 -61.45 -0.22 -7.88 16 19 C 0.23 5.22 5.09 -5.20 -0.03 5.20 16 20 C -0.55 -14.62 9.94 -34.44 -0.34 -14.96 16 21 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 22 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 23 N -0.88 -25.31 13.96 55.43 0.77 -24.53 16 24 Si 0.87 19.14 27.47 -169.99 -4.67 14.47 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 28 N -0.28 -6.23 12.56 33.64 0.42 -5.80 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.16 3.03 5.83 -52.49 -0.31 2.72 16 33 H 0.41 6.00 6.03 -40.82 -0.25 5.76 16 34 H 0.17 1.74 6.39 -52.48 -0.34 1.40 16 35 H 0.21 0.69 8.06 -52.49 -0.42 0.26 16 36 H 0.16 1.32 7.72 -52.49 -0.41 0.92 16 37 H 0.06 1.28 7.20 -51.93 -0.37 0.91 16 38 H 0.03 0.69 6.95 -51.93 -0.36 0.32 16 39 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -34.34 342.03 -8.67 -43.00 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -4.95 Total: 7.94 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -5.69 Total: -1.00 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 1.41 Total: -61.15 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.07 Total: -8.42 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.67 Total: 14.47 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.34 -8.67 -43.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626415253.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.589 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds