Wall clock time and date at job start Sat Apr 11 2020 01:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47212 * 14.04416 * 3 2 1 5 5 N 1.46500 * 109.47294 * 180.02562 * 4 3 2 6 6 C 1.46501 * 119.99709 * 274.93574 * 5 4 3 7 7 C 1.50703 * 109.47193 * 262.85918 * 6 5 4 8 8 H 1.08003 * 119.99673 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99869 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00427 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99586 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47426 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47225 * 120.00098 * 11 9 7 14 14 H 1.48508 * 109.47035 * 239.99639 * 11 9 7 15 15 C 1.34772 * 120.00118 * 94.93238 * 5 4 3 16 16 O 1.21540 * 120.00054 * 3.34433 * 15 5 4 17 17 C 1.47977 * 119.99912 * 183.33790 * 15 5 4 18 18 C 1.39934 * 120.11313 * 173.36579 * 17 15 5 19 19 C 1.38478 * 117.96858 * 179.97438 * 18 17 15 20 20 C 1.39352 * 118.03313 * 0.02562 * 19 18 17 21 21 N 1.39522 * 120.02935 * 179.97438 * 20 19 18 22 22 C 1.37232 * 126.49090 * 185.20325 * 21 20 19 23 23 C 1.34590 * 106.81983 * 180.25643 * 22 21 20 24 24 N 1.34177 * 108.23925 * 359.74504 * 23 22 21 25 25 C 1.30456 * 109.37849 * 359.97438 * 24 23 22 26 26 N 1.32693 * 119.93632 * 0.24849 * 20 19 18 27 27 N 1.28357 * 122.19649 * 359.47085 * 26 20 19 28 28 H 1.09003 * 109.47302 * 254.04451 * 3 2 1 29 29 H 1.09002 * 109.47323 * 134.04422 * 3 2 1 30 30 H 1.08997 * 109.47159 * 60.00206 * 4 3 2 31 31 H 1.09002 * 109.46981 * 300.00215 * 4 3 2 32 32 H 1.09001 * 109.47059 * 22.86103 * 6 5 4 33 33 H 1.09003 * 109.46948 * 142.86229 * 6 5 4 34 34 H 0.96995 * 120.00036 * 180.02562 * 10 9 7 35 35 H 1.08000 * 121.01743 * 0.02562 * 18 17 15 36 36 H 1.08005 * 120.98342 * 179.97438 * 19 18 17 37 37 H 1.07995 * 126.59282 * 0.03827 * 22 21 20 38 38 H 1.08002 * 125.88252 * 179.71728 * 23 22 21 39 39 H 1.08008 * 125.72687 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1186 -1.3985 -0.3500 5 7 4.5836 -1.3980 -0.3495 6 6 5.3164 -0.9849 -1.5489 7 6 5.7212 -2.2051 -2.3353 8 1 5.4592 -3.1897 -1.9772 9 6 6.4269 -2.0643 -3.5114 10 7 6.7473 -0.8653 -3.9467 11 14 6.9293 -3.5768 -4.4858 12 1 6.4529 -4.7971 -3.7864 13 1 6.3261 -3.5152 -5.8413 14 1 8.4090 -3.6204 -4.6041 15 6 5.2572 -1.7775 0.7545 16 8 4.6508 -2.1779 1.7287 17 6 6.7350 -1.7068 0.7803 18 6 7.4297 -1.9666 1.9670 19 6 8.8120 -1.8885 1.9407 20 6 9.4264 -1.5555 0.7351 21 7 10.8167 -1.4646 0.6617 22 6 11.5515 -1.0526 -0.4216 23 6 12.8469 -1.1228 -0.0630 24 7 12.9087 -1.5591 1.2043 25 6 11.7003 -1.7636 1.6511 26 7 8.6876 -1.3197 -0.3416 27 7 7.4065 -1.3961 -0.3222 28 1 2.9712 0.2833 0.9881 29 1 2.9710 0.7153 -0.7387 30 1 2.7554 -1.6811 -1.3381 31 1 2.7555 -2.1131 0.3886 32 1 4.6780 -0.3512 -2.1645 33 1 6.2073 -0.4288 -1.2569 34 1 7.2434 -0.7663 -4.7742 35 1 6.9038 -2.2212 2.8753 36 1 9.3966 -2.0791 2.8286 37 1 11.1649 -0.7365 -1.3792 38 1 13.6912 -0.8716 -0.6879 39 1 11.4445 -2.1161 2.6396 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645540135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:26 Heat of formation + Delta-G solvation = 149.748739 kcal Electronic energy + Delta-G solvation = -26744.860312 eV Core-core repulsion = 22884.157498 eV Total energy + Delta-G solvation = -3860.702814 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.123 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.45734 -40.89498 -39.14683 -36.78996 -35.52983 -34.79984 -33.15373 -32.87105 -31.62681 -30.36796 -29.56746 -27.31113 -25.79739 -24.76068 -23.75821 -23.09746 -21.49775 -21.18272 -19.66893 -18.90754 -17.76515 -17.41379 -16.94052 -16.48586 -15.94658 -15.63469 -15.04199 -14.98055 -14.79146 -14.60977 -14.08707 -14.02904 -13.96612 -13.84035 -13.56945 -13.22791 -13.08415 -12.50526 -12.47867 -12.24562 -12.15617 -11.78456 -11.17962 -11.10126 -11.00295 -10.81634 -10.65033 -10.34052 -10.31311 -10.15809 -9.84342 -9.63061 -9.23242 -9.14752 -8.66135 -8.45664 -8.04211 -6.15968 -4.15552 0.30054 0.78716 1.98865 2.27134 2.74336 2.86708 2.96858 3.04029 3.22283 3.31195 3.31479 3.36799 3.83793 4.04293 4.20215 4.24129 4.33950 4.45276 4.49810 4.67782 4.90943 4.98372 5.16075 5.20340 5.23269 5.28017 5.47009 5.55305 5.57919 5.66526 5.86369 5.97177 6.12089 6.15495 6.47007 6.56598 6.97864 7.26390 7.38402 7.62370 7.73673 7.80189 7.94243 8.06708 8.43296 8.77285 8.83706 9.45123 10.91838 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.004236 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.239002 B = 6608.927580 C = 8463.494301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.220 3.780 3 C -0.045 4.045 4 C 0.121 3.879 5 N -0.571 5.571 6 C 0.223 3.777 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.078 3.922 10 N -0.875 5.875 11 Si 0.885 3.115 12 H -0.276 1.276 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.575 3.425 16 O -0.560 6.560 17 C 0.001 3.999 18 C -0.038 4.038 19 C -0.156 4.156 20 C 0.290 3.710 21 N -0.405 5.405 22 C -0.014 4.014 23 C -0.035 4.035 24 N -0.478 5.478 25 C 0.188 3.812 26 N -0.248 5.248 27 N -0.093 5.093 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.081 0.919 34 H 0.263 0.737 35 H 0.166 0.834 36 H 0.156 0.844 37 H 0.188 0.812 38 H 0.177 0.823 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.622 1.432 9.995 11.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.098 4.098 3 C -0.086 4.086 4 C -0.005 4.005 5 N -0.299 5.299 6 C 0.104 3.896 7 C -0.551 4.551 8 H 0.073 0.927 9 C -0.127 4.127 10 N -0.512 5.512 11 Si 0.713 3.287 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.361 3.639 16 O -0.440 6.440 17 C -0.144 4.144 18 C -0.068 4.068 19 C -0.186 4.186 20 C 0.056 3.944 21 N -0.089 5.089 22 C -0.144 4.144 23 C -0.179 4.179 24 N -0.195 5.195 25 C -0.093 4.093 26 N -0.095 5.095 27 N 0.060 4.940 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.183 0.817 36 H 0.173 0.827 37 H 0.205 0.795 38 H 0.194 0.806 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 4.315 1.616 9.154 10.248 hybrid contribution 0.258 -1.142 0.173 1.183 sum 4.573 0.475 9.327 10.399 Atomic orbital electron populations 1.81190 1.13044 1.08743 1.09473 1.29037 0.95050 0.93009 0.92668 1.19751 0.81467 1.01616 1.05792 1.21262 0.80853 0.94300 1.04037 1.48242 1.05584 1.61828 1.14264 1.20241 0.92703 0.96752 0.79928 1.21246 1.35493 0.92455 1.05947 0.92718 1.24730 0.95238 0.95573 0.97117 1.69891 1.38243 1.21238 1.21866 0.86653 0.78553 0.83420 0.80061 1.20026 1.20907 1.20869 1.17417 0.84801 0.78480 0.83202 1.90731 1.68520 1.49144 1.35560 1.22985 0.97297 1.01981 0.92110 1.22241 0.92821 0.92068 0.99640 1.21745 0.95462 1.03673 0.97723 1.20320 0.84236 0.96385 0.93493 1.42965 1.03308 1.48996 1.13612 1.23161 0.91763 1.05516 0.93931 1.22390 0.95724 1.06452 0.93373 1.70309 1.21034 1.16959 1.11244 1.25329 0.83424 1.04884 0.95697 1.73629 1.01236 1.12817 1.21771 1.74689 0.97206 1.02783 1.19293 0.87349 0.86675 0.88903 0.89348 0.94496 0.90243 0.92707 0.81667 0.82680 0.79496 0.80587 0.77242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.98 18.54 42.15 0.78 -6.20 16 2 C 0.22 2.89 15.43 -20.76 -0.32 2.57 16 3 C -0.04 -0.51 6.02 -29.52 -0.18 -0.69 16 4 C 0.12 1.72 5.41 -4.04 -0.02 1.70 16 5 N -0.57 -9.95 2.48 -176.12 -0.44 -10.39 16 6 C 0.22 4.62 4.79 -5.19 -0.02 4.59 16 7 C -0.51 -12.21 8.01 -34.44 -0.28 -12.49 16 8 H 0.05 1.36 7.81 -52.48 -0.41 0.95 16 9 C 0.08 1.94 5.46 -17.82 -0.10 1.84 16 10 N -0.87 -22.57 13.29 55.43 0.74 -21.84 16 11 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 15 C 0.58 10.10 7.59 -12.27 -0.09 10.00 16 16 O -0.56 -10.10 15.89 5.33 0.08 -10.02 16 17 C 0.00 0.03 6.70 -82.83 -0.55 -0.53 16 18 C -0.04 -0.48 9.72 -38.86 -0.38 -0.86 16 19 C -0.16 -1.75 9.58 -39.08 -0.37 -2.12 16 20 C 0.29 4.20 7.58 -154.18 -1.17 3.04 16 21 N -0.41 -5.44 2.98 -63.68 -0.19 -5.63 16 22 C -0.01 -0.19 11.19 -16.42 -0.18 -0.38 16 23 C -0.04 -0.44 11.85 -17.82 -0.21 -0.65 16 24 N -0.48 -6.36 11.24 -14.45 -0.16 -6.53 16 25 C 0.19 2.15 11.91 -89.55 -1.07 1.09 16 26 N -0.25 -4.54 11.07 31.34 0.35 -4.19 16 27 N -0.09 -1.80 6.22 33.32 0.21 -1.59 16 28 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 31 H 0.09 1.27 7.24 -51.93 -0.38 0.89 16 32 H 0.04 0.78 8.02 -51.93 -0.42 0.37 16 33 H 0.08 1.76 5.23 -52.59 -0.28 1.49 16 34 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 35 H 0.17 1.69 7.73 -52.49 -0.41 1.29 16 36 H 0.16 1.05 6.86 -52.48 -0.36 0.69 16 37 H 0.19 2.49 8.06 -52.49 -0.42 2.07 16 38 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.21 1.46 7.11 -52.48 -0.37 1.09 16 LS Contribution 352.61 15.07 5.31 5.31 Total: -1.00 -30.99 352.61 -7.15 -38.14 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -3.86 Total: 0.70 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: -4.95 Total: 7.11 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 1.28 Total: -56.37 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.99 -7.15 -38.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645540135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.890 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds