Wall clock time and date at job start Sat Apr 11 2020 01:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47212 * 14.04416 * 3 2 1 5 5 N 1.46500 * 109.47294 * 180.02562 * 4 3 2 6 6 C 1.46501 * 119.99709 * 274.93574 * 5 4 3 7 7 C 1.50703 * 109.47193 * 262.85918 * 6 5 4 8 8 H 1.08003 * 119.99673 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99869 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00427 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99586 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47426 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47225 * 120.00098 * 11 9 7 14 14 H 1.48508 * 109.47035 * 239.99639 * 11 9 7 15 15 C 1.34772 * 120.00118 * 94.93238 * 5 4 3 16 16 O 1.21540 * 120.00054 * 3.34433 * 15 5 4 17 17 C 1.47977 * 119.99912 * 183.33790 * 15 5 4 18 18 C 1.39934 * 120.11313 * 173.36579 * 17 15 5 19 19 C 1.38478 * 117.96858 * 179.97438 * 18 17 15 20 20 C 1.39352 * 118.03313 * 0.02562 * 19 18 17 21 21 N 1.39522 * 120.02935 * 179.97438 * 20 19 18 22 22 C 1.37232 * 126.49090 * 185.20325 * 21 20 19 23 23 C 1.34590 * 106.81983 * 180.25643 * 22 21 20 24 24 N 1.34177 * 108.23925 * 359.74504 * 23 22 21 25 25 C 1.30456 * 109.37849 * 359.97438 * 24 23 22 26 26 N 1.32693 * 119.93632 * 0.24849 * 20 19 18 27 27 N 1.28357 * 122.19649 * 359.47085 * 26 20 19 28 28 H 1.09003 * 109.47302 * 254.04451 * 3 2 1 29 29 H 1.09002 * 109.47323 * 134.04422 * 3 2 1 30 30 H 1.08997 * 109.47159 * 60.00206 * 4 3 2 31 31 H 1.09002 * 109.46981 * 300.00215 * 4 3 2 32 32 H 1.09001 * 109.47059 * 22.86103 * 6 5 4 33 33 H 1.09003 * 109.46948 * 142.86229 * 6 5 4 34 34 H 0.96995 * 120.00036 * 180.02562 * 10 9 7 35 35 H 1.08000 * 121.01743 * 0.02562 * 18 17 15 36 36 H 1.08005 * 120.98342 * 179.97438 * 19 18 17 37 37 H 1.07995 * 126.59282 * 0.03827 * 22 21 20 38 38 H 1.08002 * 125.88252 * 179.71728 * 23 22 21 39 39 H 1.08008 * 125.72687 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1186 -1.3985 -0.3500 5 7 4.5836 -1.3980 -0.3495 6 6 5.3164 -0.9849 -1.5489 7 6 5.7212 -2.2051 -2.3353 8 1 5.4592 -3.1897 -1.9772 9 6 6.4269 -2.0643 -3.5114 10 7 6.7473 -0.8653 -3.9467 11 14 6.9293 -3.5768 -4.4858 12 1 6.4529 -4.7971 -3.7864 13 1 6.3261 -3.5152 -5.8413 14 1 8.4090 -3.6204 -4.6041 15 6 5.2572 -1.7775 0.7545 16 8 4.6508 -2.1779 1.7287 17 6 6.7350 -1.7068 0.7803 18 6 7.4297 -1.9666 1.9670 19 6 8.8120 -1.8885 1.9407 20 6 9.4264 -1.5555 0.7351 21 7 10.8167 -1.4646 0.6617 22 6 11.5515 -1.0526 -0.4216 23 6 12.8469 -1.1228 -0.0630 24 7 12.9087 -1.5591 1.2043 25 6 11.7003 -1.7636 1.6511 26 7 8.6876 -1.3197 -0.3416 27 7 7.4065 -1.3961 -0.3222 28 1 2.9712 0.2833 0.9881 29 1 2.9710 0.7153 -0.7387 30 1 2.7554 -1.6811 -1.3381 31 1 2.7555 -2.1131 0.3886 32 1 4.6780 -0.3512 -2.1645 33 1 6.2073 -0.4288 -1.2569 34 1 7.2434 -0.7663 -4.7742 35 1 6.9038 -2.2212 2.8753 36 1 9.3966 -2.0791 2.8286 37 1 11.1649 -0.7365 -1.3792 38 1 13.6912 -0.8716 -0.6879 39 1 11.4445 -2.1161 2.6396 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645540135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:26 Heat of formation + Delta-G solvation = 133.147173 kcal Electronic energy + Delta-G solvation = -26745.580210 eV Core-core repulsion = 22884.157498 eV Total energy + Delta-G solvation = -3861.422712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.123 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.45010 -42.07408 -40.45011 -37.95439 -36.90181 -35.88046 -34.59666 -34.24054 -32.87089 -31.49919 -30.54757 -28.98688 -26.95176 -25.87628 -25.05977 -24.62680 -22.50032 -22.20163 -20.91533 -19.89895 -19.01911 -18.60734 -18.34201 -17.99165 -17.09472 -16.89595 -16.41956 -16.12978 -15.97603 -15.94535 -15.27537 -15.16650 -14.98307 -14.78372 -14.73058 -14.36995 -14.27038 -14.12508 -13.71698 -13.58555 -13.43238 -13.04082 -12.83125 -12.70740 -12.31358 -12.20638 -11.98710 -11.73652 -11.58368 -11.36122 -11.32856 -11.01003 -10.57940 -10.32144 -10.15414 -9.63620 -9.51319 -8.04416 -6.07576 -0.80025 -0.24256 0.94546 1.26210 1.37884 1.43606 1.48277 1.62598 1.78009 1.80409 2.05351 2.12296 2.47650 2.64664 2.91257 3.14777 3.26298 3.33013 3.40383 3.56239 3.73006 3.85279 3.98998 4.11220 4.14401 4.35191 4.50354 4.55716 4.58163 4.72024 4.85848 4.91887 4.98699 5.06448 5.15595 5.56482 5.60626 5.82410 5.90372 6.04756 6.26860 6.44753 6.56605 6.85316 6.94328 7.12189 7.56275 7.59371 9.02808 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.004236 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.239002 B = 6608.927580 C = 8463.494301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.246 3.754 3 C -0.031 4.031 4 C 0.117 3.883 5 N -0.574 5.574 6 C 0.239 3.761 7 C -0.509 4.509 8 H 0.038 0.962 9 C 0.043 3.957 10 N -0.903 5.903 11 Si 0.924 3.076 12 H -0.279 1.279 13 H -0.280 1.280 14 H -0.290 1.290 15 C 0.575 3.425 16 O -0.565 6.565 17 C -0.017 4.017 18 C -0.030 4.030 19 C -0.124 4.124 20 C 0.285 3.715 21 N -0.414 5.414 22 C -0.045 4.045 23 C -0.029 4.029 24 N -0.505 5.505 25 C 0.206 3.794 26 N -0.292 5.292 27 N -0.134 5.134 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.260 0.740 35 H 0.197 0.803 36 H 0.213 0.787 37 H 0.176 0.824 38 H 0.196 0.804 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.616 0.938 12.923 14.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.071 4.071 3 C -0.071 4.071 4 C -0.007 4.007 5 N -0.302 5.302 6 C 0.119 3.881 7 C -0.548 4.548 8 H 0.056 0.944 9 C -0.159 4.159 10 N -0.542 5.542 11 Si 0.752 3.248 12 H -0.204 1.204 13 H -0.205 1.205 14 H -0.216 1.216 15 C 0.361 3.639 16 O -0.445 6.445 17 C -0.165 4.165 18 C -0.059 4.059 19 C -0.154 4.154 20 C 0.050 3.950 21 N -0.098 5.098 22 C -0.174 4.174 23 C -0.173 4.173 24 N -0.223 5.223 25 C -0.075 4.075 26 N -0.138 5.138 27 N 0.021 4.979 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.214 0.786 36 H 0.230 0.770 37 H 0.193 0.807 38 H 0.213 0.787 39 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 5.303 1.118 12.054 13.217 hybrid contribution 0.090 -1.043 -0.542 1.178 sum 5.392 0.076 11.513 12.713 Atomic orbital electron populations 1.81220 1.14347 1.10099 1.11097 1.29165 0.95020 0.91684 0.91245 1.19695 0.80127 1.00070 1.07252 1.21354 0.79265 0.96089 1.03972 1.48131 1.06619 1.62030 1.13442 1.19814 0.92548 0.95220 0.80551 1.21335 1.34732 0.92710 1.06067 0.94378 1.25150 0.95809 0.96799 0.98092 1.69951 1.39834 1.22133 1.22299 0.86051 0.77694 0.81631 0.79389 1.20388 1.20549 1.21623 1.17584 0.85352 0.77998 0.82957 1.90718 1.68859 1.49415 1.35535 1.23145 0.97001 1.02872 0.93436 1.22588 0.93420 0.90773 0.99069 1.22320 0.95051 1.00037 0.98005 1.20577 0.84596 0.95845 0.93954 1.43101 1.03016 1.49538 1.14112 1.23168 0.92432 1.07494 0.94324 1.22734 0.95877 1.05135 0.93511 1.70362 1.22095 1.18304 1.11496 1.26341 0.82429 1.02235 0.96506 1.73438 1.01274 1.14792 1.24256 1.74537 0.97944 1.04377 1.21067 0.85461 0.85313 0.89350 0.89283 0.95216 0.91130 0.93065 0.78591 0.77003 0.80719 0.78692 0.72506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.98 18.54 20.00 0.37 -14.61 16 2 C 0.25 6.16 15.43 89.44 1.38 7.54 16 3 C -0.03 -0.65 6.02 28.79 0.17 -0.47 16 4 C 0.12 3.26 5.41 86.38 0.47 3.73 16 5 N -0.57 -19.81 2.48 -829.41 -2.06 -21.87 16 6 C 0.24 10.08 4.79 85.63 0.41 10.49 16 7 C -0.51 -24.84 8.01 25.60 0.20 -24.63 16 8 H 0.04 1.94 7.81 -2.91 -0.02 1.92 16 9 C 0.04 2.17 5.46 84.65 0.46 2.64 16 10 N -0.90 -48.00 13.29 21.45 0.28 -47.71 16 11 Si 0.92 42.24 29.54 68.60 2.03 44.27 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 14 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 15 C 0.58 19.53 7.59 86.83 0.66 20.19 16 16 O -0.56 -19.25 15.89 -3.84 -0.06 -19.31 16 17 C -0.02 -0.57 6.70 42.00 0.28 -0.28 16 18 C -0.03 -0.64 9.72 22.74 0.22 -0.42 16 19 C -0.12 -2.23 9.58 22.60 0.22 -2.02 16 20 C 0.29 7.70 7.58 132.85 1.01 8.70 16 21 N -0.41 -10.25 2.98 -355.39 -1.06 -11.31 16 22 C -0.05 -1.22 11.19 83.01 0.93 -0.29 16 23 C -0.03 -0.70 11.85 83.50 0.99 0.29 16 24 N -0.51 -12.13 11.24 -199.64 -2.24 -14.38 16 25 C 0.21 3.92 11.91 179.97 2.14 6.07 16 26 N -0.29 -10.71 11.07 -54.77 -0.61 -11.32 16 27 N -0.13 -5.19 6.22 -48.49 -0.30 -5.49 16 28 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.09 2.52 8.11 -2.39 -0.02 2.50 16 31 H 0.09 2.47 7.24 -2.39 -0.02 2.45 16 32 H 0.03 1.29 8.02 -2.39 -0.02 1.27 16 33 H 0.07 3.22 5.23 -3.25 -0.02 3.20 16 34 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 35 H 0.20 3.05 7.73 -2.91 -0.02 3.02 16 36 H 0.21 1.28 6.86 -2.91 -0.02 1.26 16 37 H 0.18 4.98 8.06 -2.91 -0.02 4.95 16 38 H 0.20 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.26 1.92 7.11 -2.91 -0.02 1.90 16 Total: -1.00 -70.30 352.61 7.01 -63.30 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.11 Total: 6.90 kcal Atomic # 6 Polarization: 21.98 SS G_CDS: 9.54 Total: 31.53 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -5.61 Total: -126.68 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.06 Total: -19.31 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -70.30 7.01 -63.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645540135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.443 kcal (2) G-P(sol) polarization free energy of solvation -70.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds