Wall clock time and date at job start Sat Apr 11 2020 01:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99995 * 2 1 4 4 H 1.48498 * 109.47377 * 270.00113 * 3 2 1 5 5 H 1.48497 * 109.47182 * 30.00345 * 3 2 1 6 6 H 1.48507 * 109.47082 * 150.00127 * 3 2 1 7 7 C 1.38807 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00157 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00411 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99843 * 179.97438 * 9 7 2 11 11 H 1.08994 * 112.85678 * 23.80528 * 10 9 7 12 12 C 1.53789 * 113.61110 * 155.00061 * 10 9 7 13 13 C 1.53782 * 87.07993 * 139.97950 * 12 10 9 14 14 H 1.08996 * 113.61447 * 89.20061 * 13 12 10 15 15 C 1.53004 * 113.61417 * 220.01713 * 13 12 10 16 16 N 1.46499 * 109.47198 * 185.00090 * 15 13 12 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 13 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 15 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 15 20 20 C 1.52999 * 109.47004 * 179.97438 * 19 17 16 21 21 N 1.46500 * 109.47525 * 179.97438 * 20 19 17 22 22 C 1.35043 * 126.03487 * 124.99602 * 21 20 19 23 23 C 1.35370 * 107.73121 * 179.97438 * 22 21 20 24 24 Cl 1.73597 * 126.05178 * 179.97438 * 23 22 21 25 25 C 1.39934 * 107.90702 * 0.02562 * 23 22 21 26 26 N 1.30863 * 108.21005 * 359.75269 * 25 23 22 27 27 C 1.53783 * 113.61081 * 252.49331 * 10 9 7 28 28 H 0.97002 * 119.99656 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99643 * 359.97438 * 9 7 2 30 30 H 1.09001 * 113.61184 * 25.42987 * 12 10 9 31 31 H 1.08993 * 113.61407 * 254.52698 * 12 10 9 32 32 H 1.09009 * 109.46730 * 64.99878 * 15 13 12 33 33 H 1.08998 * 109.46846 * 305.00422 * 15 13 12 34 34 H 0.97001 * 119.99790 * 359.97438 * 16 15 13 35 35 H 1.09003 * 109.47112 * 299.99065 * 19 17 16 36 36 H 1.08993 * 109.47916 * 59.99687 * 19 17 16 37 37 H 1.09000 * 109.47527 * 299.99994 * 20 19 17 38 38 H 1.09007 * 109.47302 * 59.99534 * 20 19 17 39 39 H 1.08002 * 126.13720 * 359.97438 * 22 21 20 40 40 H 1.07996 * 125.89556 * 180.02562 * 25 23 22 41 41 H 1.08998 * 113.61533 * 105.47625 * 27 10 9 42 42 H 1.08998 * 113.62034 * 334.56893 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4709 -0.0011 11 1 3.5277 -3.2970 -0.4060 12 6 5.5258 -2.3660 -0.5972 13 6 5.9847 -3.3092 0.5274 14 1 5.9141 -4.3654 0.2674 15 6 7.3418 -2.9342 1.1263 16 7 7.7447 -3.9529 2.0990 17 6 8.9120 -3.8282 2.7611 18 8 9.6312 -2.8752 2.5478 19 6 9.3234 -4.8729 3.7662 20 6 10.6781 -4.4953 4.3687 21 7 11.0779 -5.5106 5.3463 22 6 12.2377 -6.2024 5.3440 23 6 12.2216 -7.0376 6.4092 24 17 13.4800 -8.1464 6.8572 25 6 11.0106 -6.8501 7.0847 26 7 10.3268 -5.9316 6.4512 27 6 4.7876 -2.7921 1.3426 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3621 -0.0014 30 1 5.9546 -1.3661 -0.5306 31 1 5.6129 -2.7995 -1.5934 32 1 7.2648 -1.9672 1.6235 33 1 8.0859 -2.8760 0.3319 34 1 7.1692 -4.7149 2.2697 35 1 8.5764 -4.9294 4.5580 36 1 9.4031 -5.8411 3.2721 37 1 11.4250 -4.4390 3.5768 38 1 10.5989 -3.5269 4.8628 39 1 13.0351 -6.1065 4.6220 40 1 10.6964 -7.3701 7.9776 41 1 4.2788 -3.5697 1.9122 42 1 5.0147 -1.9088 1.9394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691757476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:33 Heat of formation + Delta-G solvation = 41.314814 kcal Electronic energy + Delta-G solvation = -23623.748753 eV Core-core repulsion = 19859.451385 eV Total energy + Delta-G solvation = -3764.297368 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.29010 -40.95519 -39.87778 -37.37455 -36.18651 -35.28455 -35.03164 -32.79406 -31.74051 -30.56615 -28.72866 -26.47458 -25.97423 -25.03718 -22.46904 -22.22796 -22.02398 -21.39237 -20.66232 -19.36664 -18.71823 -17.78355 -17.23212 -17.01102 -16.68399 -16.28795 -16.06852 -15.70881 -15.60184 -15.26187 -14.93616 -14.70147 -14.38742 -14.23120 -14.06545 -13.94956 -13.49015 -13.25830 -13.17866 -13.04953 -12.76825 -12.68473 -12.46144 -12.26458 -12.14417 -11.90941 -11.70778 -11.61630 -11.45429 -11.16347 -10.97284 -10.85859 -10.59996 -10.08494 -9.43710 -9.27059 -8.03591 -5.35883 0.71625 0.94683 1.36770 1.39416 1.46631 1.56087 1.58071 1.76048 2.23394 2.47092 3.26959 3.46277 3.58553 3.60653 3.70878 3.80331 3.83274 3.94288 4.05916 4.09533 4.27429 4.30862 4.38228 4.39823 4.55804 4.60207 4.69602 4.77910 4.79128 4.95158 4.97442 5.04002 5.21634 5.32994 5.35689 5.43563 5.65849 5.77578 5.80960 6.22393 6.49144 6.51344 7.07550 7.18532 7.86055 8.03371 9.17935 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.031276 B = 0.001592 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.051810 B =17578.784370 C =17702.745930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.954 3.046 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.254 1.254 7 C -0.233 4.233 8 H 0.059 0.941 9 N -0.744 5.744 10 C 0.143 3.857 11 H 0.077 0.923 12 C -0.136 4.136 13 C -0.097 4.097 14 H 0.120 0.880 15 C 0.137 3.863 16 N -0.714 5.714 17 C 0.518 3.482 18 O -0.584 6.584 19 C -0.141 4.141 20 C 0.151 3.849 21 N -0.367 5.367 22 C 0.081 3.919 23 C -0.205 4.205 24 Cl -0.042 7.042 25 C 0.061 3.939 26 N -0.313 5.313 27 C -0.156 4.156 28 H 0.257 0.743 29 H 0.365 0.635 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.416 0.584 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.086 0.914 39 H 0.212 0.788 40 H 0.208 0.792 41 H 0.064 0.936 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.042 -17.616 10.152 36.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.179 1.179 7 C -0.364 4.364 8 H 0.077 0.923 9 N -0.385 5.385 10 C 0.035 3.965 11 H 0.096 0.904 12 C -0.175 4.175 13 C -0.116 4.116 14 H 0.138 0.862 15 C 0.013 3.987 16 N -0.365 5.365 17 C 0.305 3.695 18 O -0.464 6.464 19 C -0.181 4.181 20 C 0.030 3.970 21 N -0.149 5.149 22 C -0.067 4.067 23 C -0.244 4.244 24 Cl -0.014 7.014 25 C -0.126 4.126 26 N -0.134 5.134 27 C -0.196 4.196 28 H 0.066 0.934 29 H 0.198 0.802 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.253 0.747 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.104 0.896 39 H 0.229 0.771 40 H 0.225 0.775 41 H 0.083 0.917 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 29.278 -16.311 9.870 34.938 hybrid contribution 0.282 0.412 0.251 0.558 sum 29.560 -15.899 10.121 35.057 Atomic orbital electron populations 1.69883 1.07110 1.26589 1.59869 1.25501 0.96099 1.01208 1.02862 0.85427 0.78539 0.79814 0.78077 1.20381 1.22445 1.17909 1.19139 0.82907 0.93456 1.40900 0.92303 1.42794 1.02408 1.04084 1.89257 1.21960 0.90975 0.87935 0.95669 0.90446 1.23358 0.95601 0.99821 0.98734 1.22471 0.91798 1.00840 0.96444 0.86205 1.21260 0.95414 0.90858 0.91171 1.45938 1.21411 1.27340 1.41858 1.20696 0.80947 0.86561 0.81323 1.90729 1.53911 1.34581 1.67226 1.21779 0.98466 0.99283 0.98572 1.21560 0.97596 0.88403 0.89411 1.48654 1.13383 1.31645 1.21170 1.22806 0.91552 0.92829 0.99471 1.20931 0.95482 1.05262 1.02696 1.98334 1.50149 1.60635 1.92325 1.24296 0.91598 0.95965 1.00699 1.77473 1.20211 1.16536 0.99166 1.23744 0.97165 1.00363 0.98347 0.93427 0.80196 0.90491 0.89918 0.93129 0.91112 0.74685 0.87132 0.86076 0.85694 0.89564 0.77102 0.77506 0.91723 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.03 13.97 21.65 0.30 -62.73 16 2 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 3 Si 0.95 45.57 27.73 68.60 1.90 47.47 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.25 -11.03 6.52 99.48 0.65 -10.38 16 7 C -0.23 -13.11 10.45 84.03 0.88 -12.24 16 8 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 9 N -0.74 -33.76 5.21 -320.44 -1.67 -35.42 16 10 C 0.14 4.93 4.48 45.52 0.20 5.13 16 11 H 0.08 2.74 8.10 -2.39 -0.02 2.73 16 12 C -0.14 -3.44 7.39 31.12 0.23 -3.21 16 13 C -0.10 -1.92 3.76 -10.26 -0.04 -1.96 16 14 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 15 C 0.14 2.66 5.51 86.38 0.48 3.14 16 16 N -0.71 -10.86 5.56 -463.05 -2.57 -13.43 16 17 C 0.52 8.82 7.83 87.66 0.69 9.51 16 18 O -0.58 -14.63 15.98 -3.04 -0.05 -14.67 16 19 C -0.14 -1.51 5.89 29.85 0.18 -1.34 16 20 C 0.15 1.74 5.80 86.38 0.50 2.24 16 21 N -0.37 -4.90 3.68 -347.93 -1.28 -6.18 16 22 C 0.08 0.87 11.43 83.54 0.95 1.83 16 23 C -0.21 -2.64 6.65 22.02 0.15 -2.50 16 24 Cl -0.04 -0.51 29.30 -2.72 -0.08 -0.59 16 25 C 0.06 0.85 12.02 85.25 1.02 1.87 16 26 N -0.31 -5.32 12.42 -56.97 -0.71 -6.03 16 27 C -0.16 -4.36 7.43 31.12 0.23 -4.13 16 28 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.36 16.03 5.79 -92.71 -0.54 15.50 16 30 H 0.08 2.02 8.08 -2.39 -0.02 2.00 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.05 1.22 7.84 -2.38 -0.02 1.20 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.42 4.16 8.47 -92.71 -0.79 3.37 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.13 1.03 8.03 -2.39 -0.02 1.01 16 38 H 0.09 1.24 8.10 -2.38 -0.02 1.22 16 39 H 0.21 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.21 1.84 8.06 -2.91 -0.02 1.82 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.06 1.98 7.90 -2.39 -0.02 1.97 16 Total: -1.00 -75.52 372.36 1.45 -74.06 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -0.33 Total: 22.54 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 5.94 Total: -5.02 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -5.93 Total: -123.79 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.05 Total: -14.67 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.47 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.59 kcal Total: -75.52 1.45 -74.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691757476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.378 kcal (2) G-P(sol) polarization free energy of solvation -75.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds