Wall clock time and date at job start Sat Apr 11 2020 01:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.49421 * 2 1 4 4 N 1.46507 * 109.47165 * 59.99991 * 3 2 1 5 5 C 1.34776 * 119.99761 * 180.02562 * 4 3 2 6 6 O 1.21743 * 120.00071 * 359.97438 * 5 4 3 7 7 C 1.46287 * 119.99636 * 180.02562 * 5 4 3 8 8 S 1.75824 * 125.46850 * 0.02562 * 7 5 4 9 9 C 1.70596 * 91.61039 * 179.97438 * 8 7 5 10 10 C 1.33736 * 111.03975 * 359.97438 * 9 8 7 11 11 C 1.36930 * 125.46470 * 179.71478 * 7 5 4 12 12 F 1.35097 * 123.40486 * 0.02562 * 11 7 5 13 13 C 1.53040 * 109.49657 * 239.93704 * 2 1 3 14 14 C 1.53104 * 109.50304 * 301.37635 * 13 2 1 15 15 C 1.53197 * 109.32874 * 298.65866 * 14 13 2 16 16 N 1.46918 * 108.77656 * 54.63524 * 15 14 13 17 17 C 1.36943 * 120.63160 * 126.40840 * 16 15 14 18 18 H 1.07999 * 119.99819 * 331.82522 * 17 16 15 19 19 C 1.38814 * 120.00144 * 151.82089 * 17 16 15 20 20 N 1.31622 * 119.99541 * 343.08456 * 19 17 16 21 21 Si 1.86796 * 120.00217 * 163.08457 * 19 17 16 22 22 H 1.48505 * 109.47251 * 59.99662 * 21 19 17 23 23 H 1.48495 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47100 * 300.00368 * 21 19 17 25 25 C 1.46929 * 118.74134 * 306.39314 * 16 15 14 26 26 H 1.08998 * 109.47443 * 60.00145 * 1 2 3 27 27 H 1.09003 * 109.47565 * 299.99575 * 1 2 3 28 28 H 1.08999 * 109.46772 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47324 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47250 * 300.00128 * 3 2 1 31 31 H 0.96992 * 119.99944 * 359.97438 * 4 3 2 32 32 H 1.07996 * 124.48186 * 180.02562 * 9 8 7 33 33 H 1.08000 * 122.45121 * 180.02562 * 10 9 8 34 34 H 1.08999 * 109.46107 * 61.43655 * 13 2 1 35 35 H 1.09001 * 109.45514 * 181.39115 * 13 2 1 36 36 H 1.08996 * 109.48557 * 178.70684 * 14 13 2 37 37 H 1.09000 * 109.48768 * 58.61803 * 14 13 2 38 38 H 1.08996 * 109.58759 * 294.84821 * 15 14 13 39 39 H 1.09001 * 109.70206 * 174.49499 * 15 14 13 40 40 H 0.97005 * 119.99593 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.58102 * 293.81737 * 25 16 15 42 42 H 1.09000 * 109.70349 * 173.46620 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 7 1.5525 2.1331 1.1962 5 6 1.8782 3.4235 1.4092 6 8 2.5784 4.0148 0.6078 7 6 1.3913 4.1131 2.6039 8 16 0.3775 3.4006 3.8513 9 6 0.3541 4.8603 4.7337 10 6 1.0675 5.8071 4.1147 11 6 1.6569 5.4154 2.9332 12 9 2.4175 6.2343 2.1742 13 6 2.0408 -0.7227 -1.2486 14 6 1.5030 -2.1561 -1.2654 15 6 2.0141 -2.9039 -0.0299 16 7 1.6517 -2.1378 1.1702 17 6 0.9640 -2.7308 2.1953 18 1 0.3023 -3.5599 1.9930 19 6 1.1177 -2.2662 3.4943 20 7 2.1437 -1.5016 3.8027 21 14 -0.1316 -2.7261 4.8046 22 1 -0.1713 -4.2031 4.9541 23 1 0.2565 -2.1074 6.0975 24 1 -1.4738 -2.2331 4.4036 25 6 2.0413 -0.7233 1.2498 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1305 1.4419 -0.0005 30 1 1.6774 1.9563 -0.8900 31 1 0.9944 1.6621 1.8345 32 1 -0.1671 5.0011 5.6691 33 1 1.1766 6.8046 4.5140 34 1 1.6988 -0.1951 -2.1390 35 1 3.1305 -0.7439 -1.2355 36 1 1.8482 -2.6633 -2.1663 37 1 0.4133 -2.1358 -1.2535 38 1 3.0980 -3.0042 -0.0859 39 1 1.5577 -3.8927 0.0161 40 1 2.2513 -1.1773 4.7105 41 1 3.1275 -0.6458 1.2982 42 1 1.6027 -0.2708 2.1391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699872958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:06 Heat of formation + Delta-G solvation = -31.862636 kcal Electronic energy + Delta-G solvation = -26335.601444 eV Core-core repulsion = 22550.254608 eV Total energy + Delta-G solvation = -3785.346836 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.84485 -39.70771 -38.38314 -37.28594 -34.78728 -33.24540 -31.55347 -30.07496 -29.72667 -26.63648 -25.92724 -25.34435 -24.52309 -22.32301 -21.39157 -20.45211 -19.79512 -18.84563 -17.84143 -16.98304 -16.69720 -15.96010 -15.88875 -15.29449 -15.00865 -14.67198 -14.54745 -14.10016 -14.01048 -13.90941 -13.57887 -13.41803 -13.16849 -12.82687 -12.58453 -12.28705 -12.21077 -12.00146 -11.64131 -11.35512 -11.18958 -10.99435 -10.88678 -10.68016 -10.45175 -10.21795 -10.14306 -9.94628 -9.84110 -9.58166 -9.41214 -9.15473 -8.73346 -8.59820 -8.52259 -6.69961 -5.84164 -3.26563 0.27209 1.21562 1.63776 2.05052 3.24679 3.31649 3.34749 3.37949 3.39421 4.16518 4.43407 4.75956 4.85014 5.09369 5.12979 5.25947 5.40923 5.48235 5.49211 5.56072 5.66003 5.75809 5.95212 6.01541 6.06966 6.14311 6.15424 6.23170 6.39108 6.41350 6.51856 6.57383 6.69635 6.80694 6.85215 6.94069 7.02022 7.25051 7.53139 7.68501 7.73836 8.33862 8.38956 9.15705 9.78944 10.36917 11.23786 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.012059 B = 0.004855 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.417465 B = 5765.760645 C = 7606.104751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 C 0.137 3.863 4 N -0.710 5.710 5 C 0.588 3.412 6 O -0.531 6.531 7 C -0.313 4.313 8 S 0.277 5.723 9 C -0.217 4.217 10 C -0.180 4.180 11 C 0.155 3.845 12 F -0.106 7.106 13 C -0.095 4.095 14 C -0.135 4.135 15 C 0.143 3.857 16 N -0.588 5.588 17 C -0.250 4.250 18 H 0.064 0.936 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.895 3.105 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.185 3.815 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.403 0.597 32 H 0.179 0.821 33 H 0.156 0.844 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.016 0.984 39 H 0.052 0.948 40 H 0.254 0.746 41 H 0.019 0.981 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.891 10.188 -1.212 11.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.106 4.106 3 C 0.013 3.987 4 N -0.362 5.362 5 C 0.373 3.627 6 O -0.410 6.410 7 C -0.434 4.434 8 S 0.544 5.456 9 C -0.356 4.356 10 C -0.212 4.212 11 C 0.121 3.879 12 F -0.085 7.085 13 C -0.133 4.133 14 C -0.174 4.174 15 C 0.017 3.983 16 N -0.310 5.310 17 C -0.380 4.380 18 H 0.082 0.918 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.725 3.275 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.058 3.942 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.239 0.761 32 H 0.196 0.804 33 H 0.174 0.826 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.037 0.963 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.960 9.215 -1.416 10.560 hybrid contribution -0.046 1.239 0.921 1.544 sum -5.006 10.454 -0.494 11.601 Atomic orbital electron populations 1.21734 0.94483 1.02733 0.99450 1.21562 0.96533 0.92579 0.99959 1.21445 0.99115 0.92053 0.86062 1.45918 1.53161 1.10872 1.26253 1.16635 0.80393 0.81831 0.83793 1.90850 1.37965 1.66373 1.45853 1.24785 1.14548 0.99017 1.05086 1.83627 1.42603 1.09430 1.09963 1.25163 1.05561 0.98672 1.06158 1.19792 1.02897 1.02843 0.95710 1.16863 0.93608 0.86896 0.90568 1.91560 1.72209 1.70503 1.74190 1.21351 1.00009 0.95998 0.95927 1.22056 1.00984 0.95664 0.98698 1.20929 0.96412 0.94218 0.86737 1.43965 1.65330 1.05495 1.16237 1.19129 1.17717 1.15413 0.85721 0.91783 1.25010 0.96951 1.00639 0.96858 1.70031 1.27188 1.38525 1.18821 0.86476 0.81444 0.78363 0.81198 1.20890 1.21580 1.20972 1.20791 0.96305 0.83848 0.93211 0.94387 0.93825 0.90810 0.91485 0.91926 0.76051 0.80353 0.82643 0.93305 0.92493 0.93176 0.91938 0.96565 0.92918 0.93570 0.96334 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 7.81 37.16 0.29 -1.83 16 2 C -0.10 -1.82 0.53 -154.39 -0.08 -1.90 16 3 C 0.14 2.31 4.57 -4.04 -0.02 2.29 16 4 N -0.71 -12.04 4.99 -61.74 -0.31 -12.35 16 5 C 0.59 10.50 7.77 -13.03 -0.10 10.40 16 6 O -0.53 -11.04 16.14 5.15 0.08 -10.95 16 7 C -0.31 -4.76 6.45 -36.82 -0.24 -5.00 16 8 S 0.28 3.32 22.14 -107.50 -2.38 0.94 16 9 C -0.22 -2.07 10.91 29.15 0.32 -1.75 16 10 C -0.18 -1.93 10.15 -41.35 -0.42 -2.35 16 11 C 0.16 2.23 7.48 -40.25 -0.30 1.93 16 12 F -0.11 -1.72 16.42 2.25 0.04 -1.68 16 13 C -0.09 -1.52 4.72 -26.66 -0.13 -1.64 16 14 C -0.13 -2.21 5.74 -26.58 -0.15 -2.36 16 15 C 0.14 2.86 6.52 -3.71 -0.02 2.83 16 16 N -0.59 -13.67 2.43 -172.32 -0.42 -14.09 16 17 C -0.25 -6.40 9.58 -15.06 -0.14 -6.55 16 18 H 0.06 1.63 7.88 -52.49 -0.41 1.21 16 19 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 20 N -0.90 -24.34 11.19 55.49 0.62 -23.71 16 21 Si 0.90 20.28 29.59 -169.99 -5.03 15.25 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 C 0.18 4.04 3.72 -3.71 -0.01 4.02 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.72 6.86 -51.93 -0.36 0.37 16 28 H 0.07 1.35 5.97 -51.93 -0.31 1.04 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.40 6.70 5.32 -40.82 -0.22 6.49 16 32 H 0.18 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 1.03 6.33 -51.93 -0.33 0.70 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 40 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 2.06 4.97 -51.93 -0.26 1.80 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -29.90 349.93 -8.88 -38.78 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.66 Total: 4.43 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -1.10 Total: -1.88 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.11 Total: -50.16 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -2.38 Total: 0.94 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.90 -8.88 -38.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699872958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.913 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds