Wall clock time and date at job start Sat Apr 11 2020 01:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48493 * 109.47235 * 90.00274 * 3 2 1 5 5 H 1.48505 * 109.46886 * 209.99872 * 3 2 1 6 6 H 1.48501 * 109.47222 * 329.99846 * 3 2 1 7 7 C 1.38810 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99916 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99856 * 359.97438 * 7 2 1 10 10 C 1.46509 * 119.99694 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47036 * 180.02562 * 10 9 7 12 12 C 1.52991 * 109.47195 * 181.20378 * 11 10 9 13 13 H 1.09004 * 109.58952 * 298.77381 * 12 11 10 14 14 C 1.53195 * 109.58922 * 59.05911 * 12 11 10 15 15 C 1.53034 * 109.31492 * 174.42363 * 14 12 11 16 16 C 1.53041 * 109.53792 * 298.62804 * 15 14 12 17 17 C 1.53202 * 109.30656 * 61.37052 * 16 15 14 18 18 N 1.46919 * 108.77540 * 305.35997 * 17 16 15 19 19 C 1.34778 * 120.63324 * 233.62980 * 18 17 16 20 20 O 1.21736 * 120.00203 * 183.47566 * 19 18 17 21 21 C 1.46282 * 119.99867 * 3.48366 * 19 18 17 22 22 S 1.75831 * 125.46497 * 317.44956 * 21 19 18 23 23 C 1.70596 * 91.61090 * 180.02562 * 22 21 19 24 24 C 1.33743 * 111.03986 * 0.02562 * 23 22 21 25 25 C 1.36929 * 125.46726 * 137.14799 * 21 19 18 26 26 F 1.35094 * 123.40536 * 359.97438 * 25 21 19 27 27 H 0.97006 * 119.99992 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00139 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.46787 * 300.00094 * 10 9 7 30 30 H 1.09001 * 109.47077 * 59.99630 * 10 9 7 31 31 H 1.08999 * 109.47283 * 301.20939 * 11 10 9 32 32 H 1.09007 * 109.47317 * 61.20118 * 11 10 9 33 33 H 1.09002 * 109.49465 * 294.37432 * 14 12 11 34 34 H 1.09003 * 109.49460 * 54.46914 * 14 12 11 35 35 H 1.08990 * 109.46425 * 58.65737 * 15 14 12 36 36 H 1.09004 * 109.46108 * 178.61569 * 15 14 12 37 37 H 1.08994 * 109.49759 * 181.31434 * 16 15 14 38 38 H 1.08992 * 109.50206 * 301.38692 * 16 15 14 39 39 H 1.09001 * 109.58446 * 65.15147 * 17 16 15 40 40 H 1.08996 * 109.58237 * 185.42962 * 17 16 15 41 41 H 1.07998 * 124.48729 * 179.97438 * 23 22 21 42 42 H 1.07997 * 122.45169 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4401 -0.7000 6 1 1.4476 2.6527 -0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 6 1.8285 -6.1445 0.0291 13 1 2.4539 -6.2258 -0.8599 14 6 2.7076 -6.2015 1.2824 15 6 3.3616 -7.5816 1.3795 16 6 2.2771 -8.6546 1.5012 17 6 1.3932 -8.6254 0.2502 18 7 0.8758 -7.2624 0.0685 19 6 -0.4476 -7.0416 -0.0593 20 8 -0.8591 -5.9159 -0.2726 21 6 -1.3896 -8.1545 0.0585 22 16 -1.1766 -9.7504 -0.6483 23 6 -2.6665 -10.2841 -0.0114 24 6 -3.2680 -9.3118 0.6825 25 6 -2.5758 -8.1225 0.7416 26 9 -3.0244 -7.0330 1.4025 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 2.6846 -3.7145 -0.8905 30 1 2.6847 -3.7145 0.8894 31 1 0.4226 -4.7501 0.8775 32 1 0.4517 -4.7740 -0.9020 33 1 3.4810 -5.4360 1.2195 34 1 2.0933 -6.0270 2.1659 35 1 3.9559 -7.7657 0.4846 36 1 4.0070 -7.6167 2.2573 37 1 2.7442 -9.6350 1.5937 38 1 1.6674 -8.4573 2.3827 39 1 1.9829 -8.9116 -0.6207 40 1 0.5627 -9.3204 0.3735 41 1 -3.0710 -11.2757 -0.1507 42 1 -4.2235 -9.4509 1.1661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753777872.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:31 Heat of formation + Delta-G solvation = -41.727285 kcal Electronic energy + Delta-G solvation = -25883.780573 eV Core-core repulsion = 22098.005974 eV Total energy + Delta-G solvation = -3785.774599 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.05430 -41.69219 -38.83905 -38.09132 -37.01552 -34.72250 -33.92585 -32.53557 -30.75004 -29.35031 -26.87560 -25.75371 -25.38449 -24.22351 -22.59907 -22.20057 -21.17629 -20.46228 -19.36729 -18.89536 -17.96959 -17.42433 -17.01352 -16.91452 -16.46451 -16.28579 -15.73423 -15.65487 -15.53327 -15.23273 -15.05573 -14.91876 -14.75051 -14.52690 -14.09279 -13.96416 -13.66203 -13.36683 -13.00204 -12.87840 -12.80835 -12.75842 -12.43351 -12.25892 -12.12655 -11.96745 -11.86705 -11.77848 -11.56792 -11.42840 -10.95667 -10.34257 -10.00542 -9.62813 -9.36547 -9.03831 -7.96233 -5.27906 -0.65356 0.16609 0.73142 1.15742 1.43238 1.47943 1.56442 1.63984 1.97986 2.54176 3.26663 3.31583 3.35928 3.70947 3.77606 3.89220 3.94783 4.04899 4.09276 4.20527 4.34543 4.37294 4.43410 4.52039 4.63671 4.67505 4.70481 4.75364 4.85513 4.88259 4.94001 5.07866 5.13854 5.18046 5.22682 5.34102 5.36232 5.45941 5.47458 5.63227 6.23614 6.26853 7.02594 7.28257 8.04821 8.29680 9.28203 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.016191 B = 0.003287 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.971453 B = 8515.735146 C = 9806.643126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.084 4.084 3 Si 0.985 3.015 4 H -0.284 1.284 5 H -0.264 1.264 6 H -0.294 1.294 7 C -0.249 4.249 8 H 0.082 0.918 9 N -0.751 5.751 10 C 0.149 3.851 11 C -0.096 4.096 12 C 0.159 3.841 13 H 0.094 0.906 14 C -0.131 4.131 15 C -0.114 4.114 16 C -0.129 4.129 17 C 0.085 3.915 18 N -0.598 5.598 19 C 0.574 3.426 20 O -0.560 6.560 21 C -0.354 4.354 22 S 0.343 5.657 23 C -0.200 4.200 24 C -0.189 4.189 25 C 0.123 3.877 26 F -0.139 7.139 27 H 0.251 0.749 28 H 0.368 0.632 29 H 0.023 0.977 30 H 0.029 0.971 31 H 0.034 0.966 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.052 0.948 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.224 0.776 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.034 -34.382 0.563 34.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.276 4.276 3 Si 0.812 3.188 4 H -0.211 1.211 5 H -0.188 1.188 6 H -0.221 1.221 7 C -0.380 4.380 8 H 0.099 0.901 9 N -0.393 5.393 10 C 0.022 3.978 11 C -0.134 4.134 12 C 0.056 3.944 13 H 0.112 0.888 14 C -0.170 4.170 15 C -0.151 4.151 16 C -0.167 4.167 17 C -0.036 4.036 18 N -0.330 5.330 19 C 0.362 3.638 20 O -0.440 6.440 21 C -0.475 4.475 22 S 0.610 5.390 23 C -0.337 4.337 24 C -0.219 4.219 25 C 0.088 3.912 26 F -0.118 7.118 27 H 0.060 0.940 28 H 0.198 0.802 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.071 0.929 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.241 0.759 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.102 -34.374 -0.416 34.516 hybrid contribution -1.910 2.638 1.251 3.489 sum 1.191 -31.736 0.835 31.770 Atomic orbital electron populations 1.69900 1.07091 1.26150 1.59505 1.25778 0.96481 1.01748 1.03558 0.84982 0.77655 0.78558 0.77592 1.21101 1.18817 1.22083 1.19738 0.91658 0.85215 1.41409 0.90059 1.42673 1.05532 1.01662 1.89412 1.20986 0.93945 0.85070 0.97758 1.21926 0.96335 0.93155 1.01983 1.21229 0.89428 0.83939 0.99816 0.88835 1.22042 0.98827 1.00066 0.96035 1.21540 0.97675 0.92127 1.03794 1.21923 0.97038 1.01252 0.96503 1.22535 0.99542 0.80857 1.00701 1.48126 1.04375 1.09594 1.70938 1.17384 0.82605 0.86986 0.76872 1.91008 1.78925 1.24338 1.49744 1.24728 1.02273 1.04113 1.16343 1.82744 1.14324 0.95072 1.46876 1.25825 1.00743 1.05722 1.01403 1.19948 1.04458 0.90557 1.06916 1.17581 0.92658 0.85359 0.95578 1.91501 1.88671 1.53260 1.78322 0.94018 0.80154 0.95911 0.95360 0.94736 0.92074 0.90140 0.93657 0.89765 0.90191 0.86793 0.92932 0.87805 0.88588 0.75945 0.80843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.90 13.06 21.65 0.28 -65.62 16 2 C -0.08 -5.27 5.50 84.86 0.47 -4.80 16 3 Si 0.98 49.29 29.55 68.60 2.03 51.32 16 4 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 5 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 7 C -0.25 -15.32 9.99 84.03 0.84 -14.48 16 8 H 0.08 4.69 7.83 -2.91 -0.02 4.67 16 9 N -0.75 -44.54 5.60 -343.44 -1.92 -46.47 16 10 C 0.15 6.92 5.92 86.38 0.51 7.43 16 11 C -0.10 -4.06 3.28 30.59 0.10 -3.96 16 12 C 0.16 4.69 3.03 44.97 0.14 4.83 16 13 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 14 C -0.13 -3.27 4.82 30.67 0.15 -3.12 16 15 C -0.11 -1.73 5.88 30.62 0.18 -1.55 16 16 C -0.13 -1.64 6.08 30.68 0.19 -1.45 16 17 C 0.09 1.26 5.86 86.37 0.51 1.76 16 18 N -0.60 -15.77 2.97 -800.12 -2.38 -18.15 16 19 C 0.57 19.27 7.34 86.33 0.63 19.91 16 20 O -0.56 -25.52 12.47 -4.46 -0.06 -25.57 16 21 C -0.35 -9.03 5.57 24.06 0.13 -8.89 16 22 S 0.34 3.92 19.69 -56.49 -1.11 2.81 16 23 C -0.20 -1.75 10.91 66.80 0.73 -1.02 16 24 C -0.19 -3.01 10.15 21.13 0.21 -2.79 16 25 C 0.12 3.28 7.47 21.84 0.16 3.45 16 26 F -0.14 -4.89 17.14 44.97 0.77 -4.12 16 27 H 0.25 16.26 8.31 -92.70 -0.77 15.49 16 28 H 0.37 24.01 7.67 -92.71 -0.71 23.30 16 29 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.03 1.26 6.48 -2.39 -0.02 1.24 16 31 H 0.03 1.67 7.19 -2.39 -0.02 1.66 16 32 H 0.06 2.96 6.28 -2.38 -0.01 2.94 16 33 H 0.08 2.06 6.72 -2.39 -0.02 2.04 16 34 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 39 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 1.15 3.85 -17.91 -0.07 1.08 16 41 H 0.22 -0.05 8.06 -2.91 -0.02 -0.07 16 42 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -88.49 349.19 2.84 -85.65 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.28 Total: 24.85 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 4.95 Total: -4.70 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -4.02 Total: -130.23 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.06 Total: -25.57 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.77 Total: -4.12 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.03 Total: 51.32 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.11 Total: 2.81 kcal Total: -88.49 2.84 -85.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753777872.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.924 kcal (2) G-P(sol) polarization free energy of solvation -88.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds