Wall clock time and date at job start Sat Apr 11 2020 01:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 110.38521 * 2 1 4 4 N 1.46500 * 109.47312 * 299.21941 * 3 2 1 5 5 C 1.36937 * 119.99664 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00317 * 0.02562 * 5 4 3 7 7 C 1.38819 * 119.99497 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99825 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00165 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47246 * 89.99463 * 9 7 5 11 11 H 1.48494 * 109.47168 * 209.99932 * 9 7 5 12 12 H 1.48506 * 109.47002 * 329.99256 * 9 7 5 13 13 C 1.54283 * 110.34271 * 237.77050 * 2 1 3 14 14 C 1.54391 * 105.05272 * 241.07368 * 13 2 1 15 15 N 1.48317 * 104.53792 * 336.26252 * 14 13 2 16 16 C 1.34769 * 127.77054 * 219.51516 * 15 14 13 17 17 O 1.21277 * 120.00077 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.99931 * 359.93266 * 16 15 14 19 19 N 1.46505 * 109.47231 * 180.02562 * 18 16 15 20 20 C 1.35042 * 126.03813 * 124.71662 * 19 18 16 21 21 C 1.35373 * 107.72419 * 179.83875 * 20 19 18 22 22 Cl 1.73608 * 126.04202 * 180.17697 * 21 20 19 23 23 C 1.39928 * 107.91156 * 0.42105 * 21 20 19 24 24 N 1.30855 * 108.21171 * 359.73765 * 23 21 20 25 25 C 1.48146 * 104.39133 * 39.45765 * 15 14 13 26 26 H 1.09004 * 109.46749 * 180.77405 * 1 2 3 27 27 H 1.09000 * 109.46913 * 300.77477 * 1 2 3 28 28 H 1.08993 * 109.46943 * 60.77923 * 1 2 3 29 29 H 1.08999 * 109.47461 * 59.22741 * 3 2 1 30 30 H 1.09004 * 109.47274 * 179.21933 * 3 2 1 31 31 H 0.96997 * 119.99823 * 0.02562 * 4 3 2 32 32 H 0.97002 * 120.00143 * 180.02562 * 8 7 5 33 33 H 1.09002 * 110.34406 * 359.97438 * 13 2 1 34 34 H 1.09000 * 110.34365 * 122.15120 * 13 2 1 35 35 H 1.09000 * 110.40460 * 94.96891 * 14 13 2 36 36 H 1.08992 * 110.40933 * 217.40455 * 14 13 2 37 37 H 1.09004 * 109.47034 * 300.00001 * 18 16 15 38 38 H 1.08998 * 109.47124 * 60.00094 * 18 16 15 39 39 H 1.07999 * 126.13325 * 359.96852 * 20 19 18 40 40 H 1.07995 * 125.89128 * 179.75750 * 23 21 20 41 41 H 1.09000 * 110.40949 * 201.69443 * 25 15 14 42 42 H 1.08998 * 110.40973 * 79.26010 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 7 1.6011 2.1268 -1.2055 5 6 1.9552 3.4315 -1.4235 6 1 2.5753 3.9498 -0.7070 7 6 1.5179 4.0877 -2.5660 8 7 1.8587 5.3416 -2.7759 9 14 0.4460 3.1911 -3.8055 10 1 -0.9837 3.3790 -3.4510 11 1 0.6955 3.7384 -5.1632 12 1 0.7743 1.7429 -3.7878 13 6 2.0664 -0.7715 -1.2237 14 6 2.8820 -1.9422 -0.6337 15 7 3.2665 -1.4817 0.7227 16 6 4.4424 -1.6664 1.3546 17 8 4.6061 -1.2251 2.4723 18 6 5.5537 -2.4223 0.6727 19 7 6.7172 -2.4864 1.5607 20 6 7.3517 -3.6100 1.9590 21 6 8.3732 -3.2419 2.7674 22 17 9.5005 -4.3121 3.5407 23 6 8.3564 -1.8468 2.8741 24 7 7.3643 -1.3933 2.1513 25 6 2.0668 -0.7721 1.2245 26 1 -0.3633 -1.0276 0.0139 27 1 -0.3633 0.5258 0.8830 28 1 -0.3633 0.5017 -0.8968 29 1 1.6967 1.9579 0.8829 30 1 3.1528 1.4168 0.0140 31 1 1.0439 1.6615 -1.8487 32 1 1.5528 5.8002 -3.5740 33 1 1.2399 -1.1509 -1.8246 34 1 2.7081 -0.1282 -1.8258 35 1 2.2668 -2.8397 -0.5697 36 1 3.7688 -2.1305 -1.2387 37 1 5.2172 -3.4330 0.4418 38 1 5.8281 -1.9109 -0.2499 39 1 7.0921 -4.6207 1.6805 40 1 9.0437 -1.2478 3.4529 41 1 2.3401 -0.0794 2.0206 42 1 1.3235 -1.4860 1.5793 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754706683.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:47 Heat of formation + Delta-G solvation = 67.230692 kcal Electronic energy + Delta-G solvation = -25290.907736 eV Core-core repulsion = 21527.734165 eV Total energy + Delta-G solvation = -3763.173571 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -41.59731 -40.22206 -38.21781 -36.66388 -35.02500 -33.66762 -32.75214 -30.80229 -30.33403 -29.71125 -28.30506 -26.40047 -25.54121 -23.38040 -22.17041 -21.66680 -21.49043 -19.63486 -19.01281 -17.78861 -17.74222 -17.11723 -16.31850 -15.79496 -15.30790 -14.77592 -14.60421 -14.47117 -14.43917 -14.00103 -13.66330 -13.61316 -13.50836 -13.29599 -12.74636 -12.59635 -12.45210 -12.26590 -12.18800 -11.94577 -11.62877 -11.46833 -11.37737 -10.94980 -10.77980 -10.72403 -10.56633 -10.38961 -10.28458 -10.06980 -9.67974 -9.59562 -8.93675 -8.87790 -8.70384 -7.25604 -5.78586 -3.14297 1.38539 1.61470 2.34522 2.38349 2.44049 2.76519 3.30576 3.33838 3.40765 3.99131 4.19035 4.34395 4.51069 4.55221 4.59413 4.65425 4.70343 4.88039 5.06705 5.14977 5.19722 5.27644 5.31733 5.49334 5.54681 5.61725 5.65254 5.72964 5.73925 5.97935 6.03445 6.09815 6.21118 6.33764 6.39199 6.43081 6.64677 6.70781 7.29261 7.31629 7.91109 7.98301 8.40198 9.19162 9.90768 10.10866 11.40020 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.021006 B = 0.002496 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.620439 B =11214.131923 C =11824.281114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 C 0.172 3.828 4 N -0.752 5.752 5 C -0.242 4.242 6 H 0.089 0.911 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.278 1.278 13 C -0.130 4.130 14 C 0.098 3.902 15 N -0.620 5.620 16 C 0.521 3.479 17 O -0.511 6.511 18 C 0.121 3.879 19 N -0.354 5.354 20 C 0.071 3.929 21 C -0.184 4.184 22 Cl -0.046 7.046 23 C 0.059 3.941 24 N -0.245 5.245 25 C 0.120 3.880 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.029 0.971 30 H 0.027 0.973 31 H 0.361 0.639 32 H 0.259 0.741 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.183 0.817 40 H 0.192 0.808 41 H 0.086 0.914 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.065 -25.052 6.857 26.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.086 4.086 3 C 0.045 3.955 4 N -0.398 5.398 5 C -0.372 4.372 6 H 0.107 0.893 7 C -0.192 4.192 8 N -0.582 5.582 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.204 1.204 13 C -0.168 4.168 14 C -0.024 4.024 15 N -0.355 5.355 16 C 0.307 3.693 17 O -0.385 6.385 18 C -0.004 4.004 19 N -0.137 5.137 20 C -0.076 4.076 21 C -0.223 4.223 22 Cl -0.018 7.018 23 C -0.129 4.129 24 N -0.065 5.065 25 C -0.002 4.002 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.194 0.806 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.200 0.800 40 H 0.209 0.791 41 H 0.104 0.896 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.712 -23.641 7.132 25.590 hybrid contribution -0.305 -1.328 -0.774 1.567 sum 6.407 -24.970 6.358 26.551 Atomic orbital electron populations 1.21797 0.93266 1.00909 1.03102 1.21751 0.96248 0.96756 0.93829 1.20639 0.96542 0.87937 0.90366 1.42695 1.62441 1.11985 1.22720 1.19064 1.26571 0.86306 1.05301 0.89293 1.24678 1.00558 0.95873 0.98102 1.69703 1.49848 1.10073 1.28559 0.86567 0.81110 0.79091 0.81848 1.21071 1.21750 1.20389 1.22702 1.00210 0.96230 0.97650 1.22562 0.99469 0.97836 0.82579 1.48935 1.12857 1.55871 1.17836 1.19927 0.81810 0.81181 0.86354 1.90812 1.79837 1.49155 1.18661 1.21531 0.82672 1.03826 0.92348 1.47864 1.23864 1.04160 1.37769 1.22176 0.94208 0.93023 0.98194 1.20739 1.00542 0.91638 1.09387 1.98323 1.59619 1.63935 1.79903 1.23966 0.97194 0.92452 0.99313 1.77746 1.07679 1.08972 1.12070 1.22429 0.85317 0.95332 0.97166 0.93005 0.92122 0.91704 0.95342 0.95508 0.80600 0.93058 0.90299 0.89406 0.90732 0.90426 0.85540 0.86147 0.79990 0.79137 0.89550 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 8.07 37.16 0.30 -1.37 16 2 C -0.08 -1.15 0.73 -153.11 -0.11 -1.26 16 3 C 0.17 3.26 4.90 -4.04 -0.02 3.24 16 4 N -0.75 -17.16 4.73 -59.91 -0.28 -17.44 16 5 C -0.24 -6.82 10.47 -15.06 -0.16 -6.97 16 6 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 7 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 8 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16 9 Si 0.88 21.51 27.74 -169.99 -4.71 16.79 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 13 C -0.13 -1.52 5.78 -25.33 -0.15 -1.67 16 14 C 0.10 0.83 6.92 -2.31 -0.02 0.81 16 15 N -0.62 -7.06 3.32 -169.17 -0.56 -7.62 16 16 C 0.52 6.66 7.94 -10.99 -0.09 6.57 16 17 O -0.51 -8.94 15.97 5.56 0.09 -8.85 16 18 C 0.12 1.05 5.97 -5.19 -0.03 1.02 16 19 N -0.35 -3.95 3.40 -62.50 -0.21 -4.16 16 20 C 0.07 0.63 11.43 -17.16 -0.20 0.44 16 21 C -0.18 -1.86 6.65 -39.97 -0.27 -2.13 16 22 Cl -0.05 -0.40 29.30 -51.86 -1.52 -1.92 16 23 C 0.06 0.68 12.02 -17.34 -0.21 0.47 16 24 N -0.24 -3.46 11.64 30.64 0.36 -3.10 16 25 C 0.12 1.48 6.14 -2.41 -0.01 1.47 16 26 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.93 7.01 -51.93 -0.36 0.56 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.36 7.84 4.14 -40.82 -0.17 7.68 16 32 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 33 H 0.08 0.82 7.71 -51.93 -0.40 0.42 16 34 H 0.09 1.27 7.48 -51.93 -0.39 0.88 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.49 7.31 -51.93 -0.38 0.11 16 37 H 0.13 0.52 8.07 -51.93 -0.42 0.11 16 38 H 0.12 0.90 7.95 -51.93 -0.41 0.48 16 39 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.19 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.09 1.25 7.60 -51.93 -0.39 0.86 16 42 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 LS Contribution 361.64 15.07 5.45 5.45 Total: -1.00 -36.69 361.64 -7.56 -44.25 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.89 Total: 4.53 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.05 Total: 0.62 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.07 Total: -60.87 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.79 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.52 Total: -1.92 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.69 -7.56 -44.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754706683.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.482 kcal (2) G-P(sol) polarization free energy of solvation -36.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds