Wall clock time and date at job start Sat Apr 11 2020 01:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 110.38521 * 2 1 4 4 N 1.46500 * 109.47312 * 299.21941 * 3 2 1 5 5 C 1.36937 * 119.99664 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00317 * 0.02562 * 5 4 3 7 7 C 1.38819 * 119.99497 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99825 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00165 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47246 * 89.99463 * 9 7 5 11 11 H 1.48494 * 109.47168 * 209.99932 * 9 7 5 12 12 H 1.48506 * 109.47002 * 329.99256 * 9 7 5 13 13 C 1.54283 * 110.34271 * 237.77050 * 2 1 3 14 14 C 1.54391 * 105.05272 * 241.07368 * 13 2 1 15 15 N 1.48317 * 104.53792 * 336.26252 * 14 13 2 16 16 C 1.34769 * 127.77054 * 219.51516 * 15 14 13 17 17 O 1.21277 * 120.00077 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.99931 * 359.93266 * 16 15 14 19 19 N 1.46505 * 109.47231 * 180.02562 * 18 16 15 20 20 C 1.35042 * 126.03813 * 124.71662 * 19 18 16 21 21 C 1.35373 * 107.72419 * 179.83875 * 20 19 18 22 22 Cl 1.73608 * 126.04202 * 180.17697 * 21 20 19 23 23 C 1.39928 * 107.91156 * 0.42105 * 21 20 19 24 24 N 1.30855 * 108.21171 * 359.73765 * 23 21 20 25 25 C 1.48146 * 104.39133 * 39.45765 * 15 14 13 26 26 H 1.09004 * 109.46749 * 180.77405 * 1 2 3 27 27 H 1.09000 * 109.46913 * 300.77477 * 1 2 3 28 28 H 1.08993 * 109.46943 * 60.77923 * 1 2 3 29 29 H 1.08999 * 109.47461 * 59.22741 * 3 2 1 30 30 H 1.09004 * 109.47274 * 179.21933 * 3 2 1 31 31 H 0.96997 * 119.99823 * 0.02562 * 4 3 2 32 32 H 0.97002 * 120.00143 * 180.02562 * 8 7 5 33 33 H 1.09002 * 110.34406 * 359.97438 * 13 2 1 34 34 H 1.09000 * 110.34365 * 122.15120 * 13 2 1 35 35 H 1.09000 * 110.40460 * 94.96891 * 14 13 2 36 36 H 1.08992 * 110.40933 * 217.40455 * 14 13 2 37 37 H 1.09004 * 109.47034 * 300.00001 * 18 16 15 38 38 H 1.08998 * 109.47124 * 60.00094 * 18 16 15 39 39 H 1.07999 * 126.13325 * 359.96852 * 20 19 18 40 40 H 1.07995 * 125.89128 * 179.75750 * 23 21 20 41 41 H 1.09000 * 110.40949 * 201.69443 * 25 15 14 42 42 H 1.08998 * 110.40973 * 79.26010 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 7 1.6011 2.1268 -1.2055 5 6 1.9552 3.4315 -1.4235 6 1 2.5753 3.9498 -0.7070 7 6 1.5179 4.0877 -2.5660 8 7 1.8587 5.3416 -2.7759 9 14 0.4460 3.1911 -3.8055 10 1 -0.9837 3.3790 -3.4510 11 1 0.6955 3.7384 -5.1632 12 1 0.7743 1.7429 -3.7878 13 6 2.0664 -0.7715 -1.2237 14 6 2.8820 -1.9422 -0.6337 15 7 3.2665 -1.4817 0.7227 16 6 4.4424 -1.6664 1.3546 17 8 4.6061 -1.2251 2.4723 18 6 5.5537 -2.4223 0.6727 19 7 6.7172 -2.4864 1.5607 20 6 7.3517 -3.6100 1.9590 21 6 8.3732 -3.2419 2.7674 22 17 9.5005 -4.3121 3.5407 23 6 8.3564 -1.8468 2.8741 24 7 7.3643 -1.3933 2.1513 25 6 2.0668 -0.7721 1.2245 26 1 -0.3633 -1.0276 0.0139 27 1 -0.3633 0.5258 0.8830 28 1 -0.3633 0.5017 -0.8968 29 1 1.6967 1.9579 0.8829 30 1 3.1528 1.4168 0.0140 31 1 1.0439 1.6615 -1.8487 32 1 1.5528 5.8002 -3.5740 33 1 1.2399 -1.1509 -1.8246 34 1 2.7081 -0.1282 -1.8258 35 1 2.2668 -2.8397 -0.5697 36 1 3.7688 -2.1305 -1.2387 37 1 5.2172 -3.4330 0.4418 38 1 5.8281 -1.9109 -0.2499 39 1 7.0921 -4.6207 1.6805 40 1 9.0437 -1.2478 3.4529 41 1 2.3401 -0.0794 2.0206 42 1 1.3235 -1.4860 1.5793 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754706683.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:46 Heat of formation + Delta-G solvation = 40.800652 kcal Electronic energy + Delta-G solvation = -25292.053829 eV Core-core repulsion = 21527.734165 eV Total energy + Delta-G solvation = -3764.319664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.36163 -41.17696 -39.31079 -37.35987 -36.60392 -34.65119 -34.16458 -32.65389 -31.10293 -30.59606 -29.15031 -27.83517 -26.73224 -24.40912 -23.91296 -22.54722 -22.20824 -20.61311 -20.25908 -19.52331 -18.52470 -18.10314 -17.20390 -16.71624 -16.53171 -16.28090 -15.67393 -15.56134 -15.21570 -15.17283 -15.09386 -14.87116 -14.39503 -14.28587 -14.23635 -13.64680 -13.49676 -13.38627 -13.19034 -13.01879 -12.87237 -12.67094 -12.48080 -12.35219 -12.17581 -11.94865 -11.75957 -11.56811 -11.49676 -11.37868 -11.21712 -11.01223 -10.52518 -9.79300 -9.44165 -9.34006 -8.05191 -5.40116 0.66565 0.94216 1.34633 1.41827 1.45425 1.49102 1.60104 1.71415 1.96227 2.47028 3.19901 3.25726 3.47060 3.60293 3.66463 3.77414 3.82768 3.98867 4.01910 4.08315 4.27159 4.32570 4.41929 4.47473 4.60175 4.63322 4.72786 4.76471 4.85211 4.88917 4.98758 5.04619 5.15614 5.28463 5.31876 5.37979 5.50915 5.71177 5.78131 6.17868 6.46652 6.51466 7.01523 7.05106 7.78213 8.03147 9.16906 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.021006 B = 0.002496 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.620439 B =11214.131923 C =11824.281114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C 0.173 3.827 4 N -0.745 5.745 5 C -0.241 4.241 6 H 0.041 0.959 7 C -0.067 4.067 8 N -0.987 5.987 9 Si 0.962 3.038 10 H -0.275 1.275 11 H -0.296 1.296 12 H -0.239 1.239 13 C -0.132 4.132 14 C 0.103 3.897 15 N -0.620 5.620 16 C 0.512 3.488 17 O -0.572 6.572 18 C 0.122 3.878 19 N -0.362 5.362 20 C 0.088 3.912 21 C -0.202 4.202 22 Cl -0.038 7.038 23 C 0.050 3.950 24 N -0.307 5.307 25 C 0.123 3.877 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.008 0.992 30 H 0.001 0.999 31 H 0.371 0.629 32 H 0.259 0.741 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.184 0.816 38 H 0.134 0.866 39 H 0.228 0.772 40 H 0.201 0.799 41 H 0.050 0.950 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.568 -30.134 4.990 31.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.079 4.079 3 C 0.046 3.954 4 N -0.392 5.392 5 C -0.372 4.372 6 H 0.060 0.940 7 C -0.258 4.258 8 N -0.637 5.637 9 Si 0.787 3.213 10 H -0.201 1.201 11 H -0.222 1.222 12 H -0.163 1.163 13 C -0.170 4.170 14 C -0.018 4.018 15 N -0.354 5.354 16 C 0.300 3.700 17 O -0.451 6.451 18 C -0.002 4.002 19 N -0.144 5.144 20 C -0.059 4.059 21 C -0.241 4.241 22 Cl -0.010 7.010 23 C -0.137 4.137 24 N -0.128 5.128 25 C -0.001 4.001 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.026 0.974 30 H 0.019 0.981 31 H 0.206 0.794 32 H 0.068 0.932 33 H 0.123 0.877 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.124 0.876 37 H 0.201 0.799 38 H 0.151 0.849 39 H 0.245 0.755 40 H 0.218 0.782 41 H 0.069 0.931 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.209 -28.776 5.261 29.713 hybrid contribution 0.221 0.340 -0.091 0.416 sum 5.429 -28.436 5.170 29.408 Atomic orbital electron populations 1.21799 0.91819 1.03253 1.01939 1.21626 0.97255 0.92970 0.96013 1.20690 0.95042 0.91623 0.88034 1.42536 1.62370 1.10202 1.24080 1.18972 1.25479 0.88431 1.04339 0.94049 1.25647 1.02659 0.96809 1.00685 1.69921 1.51857 1.12434 1.29501 0.85323 0.78684 0.79640 0.77649 1.20103 1.22240 1.16270 1.22721 1.01000 0.96791 0.96503 1.22830 1.00901 0.97434 0.80621 1.49064 1.12220 1.55127 1.19013 1.20747 0.82630 0.80712 0.85871 1.90788 1.80919 1.51795 1.21561 1.21882 0.80428 1.06467 0.91388 1.48079 1.24330 1.04031 1.37946 1.22881 0.92710 0.94062 0.96266 1.20890 1.01605 0.91217 1.10386 1.98321 1.59421 1.63358 1.79851 1.24271 0.96812 0.93724 0.98881 1.77663 1.09378 1.11486 1.14234 1.22354 0.86650 0.95512 0.95549 0.88843 0.92983 0.93221 0.97372 0.98142 0.79366 0.93237 0.87686 0.92526 0.86573 0.87609 0.79887 0.84874 0.75535 0.78219 0.93093 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.07 71.98 0.58 -2.31 16 2 C -0.08 -1.98 0.73 -51.27 -0.04 -2.01 16 3 C 0.17 6.80 4.90 86.38 0.42 7.23 16 4 N -0.75 -34.43 4.73 -343.44 -1.62 -36.05 16 5 C -0.24 -14.16 10.47 84.04 0.88 -13.28 16 6 H 0.04 2.75 8.06 -2.91 -0.02 2.73 16 7 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 8 N -0.99 -64.34 13.97 21.65 0.30 -64.04 16 9 Si 0.96 44.05 27.74 68.60 1.90 45.95 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 12 H -0.24 -9.32 6.52 99.48 0.65 -8.67 16 13 C -0.13 -2.61 5.78 31.50 0.18 -2.43 16 14 C 0.10 1.21 6.92 86.50 0.60 1.80 16 15 N -0.62 -12.58 3.32 -807.53 -2.68 -15.26 16 16 C 0.51 12.41 7.94 87.66 0.70 13.10 16 17 O -0.57 -20.61 15.97 -3.02 -0.05 -20.66 16 18 C 0.12 1.72 5.97 85.63 0.51 2.23 16 19 N -0.36 -7.45 3.40 -351.65 -1.20 -8.65 16 20 C 0.09 1.32 11.43 83.54 0.95 2.28 16 21 C -0.20 -3.85 6.65 22.02 0.15 -3.71 16 22 Cl -0.04 -0.61 29.30 -2.72 -0.08 -0.69 16 23 C 0.05 1.18 12.02 85.25 1.02 2.21 16 24 N -0.31 -8.87 11.64 -56.98 -0.66 -9.54 16 25 C 0.12 2.85 6.14 86.53 0.53 3.38 16 26 H 0.09 1.33 8.12 -2.38 -0.02 1.31 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.05 1.26 7.01 -2.39 -0.02 1.25 16 29 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 31 H 0.37 15.54 4.14 -92.71 -0.38 15.16 16 32 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 33 H 0.10 1.58 7.71 -2.39 -0.02 1.56 16 34 H 0.06 1.50 7.48 -2.39 -0.02 1.48 16 35 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.11 0.70 7.31 -2.39 -0.02 0.69 16 37 H 0.18 0.39 8.07 -2.38 -0.02 0.37 16 38 H 0.13 1.55 7.95 -2.39 -0.02 1.53 16 39 H 0.23 1.09 8.06 -2.91 -0.02 1.07 16 40 H 0.20 3.80 8.06 -2.91 -0.02 3.77 16 41 H 0.05 1.55 7.60 -2.39 -0.02 1.53 16 42 H 0.11 1.82 7.85 -2.39 -0.02 1.80 16 Total: -1.00 -89.14 361.64 3.47 -85.68 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.59 Total: 18.26 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 6.96 Total: 4.99 kcal Atomic # 7 Polarization: -127.67 SS G_CDS: -5.86 Total: -133.53 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.05 Total: -20.66 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.90 Total: 45.95 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -89.14 3.47 -85.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754706683.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.478 kcal (2) G-P(sol) polarization free energy of solvation -89.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds