Wall clock time and date at job start Sat Apr 11 2020 01:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00173 * 2 1 4 4 H 1.48501 * 109.46876 * 239.99682 * 3 2 1 5 5 H 1.48499 * 109.47034 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47021 * 119.99746 * 3 2 1 7 7 C 1.38816 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99823 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99790 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99673 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46931 * 180.02562 * 10 9 7 12 12 C 1.53782 * 113.61251 * 185.00493 * 11 10 9 13 13 C 1.53781 * 87.07711 * 220.02091 * 12 11 10 14 14 N 1.46503 * 113.61522 * 139.98168 * 13 12 11 15 15 C 1.34780 * 120.00215 * 156.52915 * 14 13 12 16 16 O 1.21474 * 119.99916 * 359.97438 * 15 14 13 17 17 C 1.48453 * 120.00160 * 179.97438 * 15 14 13 18 18 C 1.39529 * 120.55153 * 179.97438 * 17 15 14 19 19 C 1.38765 * 118.26574 * 179.97438 * 18 17 15 20 20 C 1.50706 * 120.42595 * 180.02562 * 19 18 17 21 21 F 1.39903 * 109.46954 * 299.99516 * 20 19 18 22 22 F 1.39897 * 109.46974 * 59.99970 * 20 19 18 23 23 N 1.32203 * 119.14580 * 359.97438 * 19 18 17 24 24 C 1.31885 * 121.03551 * 0.02562 * 23 19 18 25 25 N 1.31577 * 121.91914 * 359.97285 * 24 23 19 26 26 C 1.53780 * 87.17586 * 25.38837 * 13 12 11 27 27 H 0.97000 * 120.00131 * 0.02562 * 1 2 3 28 28 H 0.96996 * 120.00784 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.46701 * 60.00341 * 10 9 7 30 30 H 1.08996 * 109.47769 * 300.00189 * 10 9 7 31 31 H 1.09002 * 112.85147 * 316.19903 * 11 10 9 32 32 H 1.08993 * 113.61577 * 105.47489 * 12 11 10 33 33 H 1.09007 * 113.68808 * 334.57426 * 12 11 10 34 34 H 1.09004 * 113.61459 * 270.79773 * 13 12 11 35 35 H 0.96996 * 120.00013 * 336.52561 * 14 13 12 36 36 H 1.08003 * 120.87050 * 0.24495 * 18 17 15 37 37 H 1.09001 * 109.46638 * 180.02562 * 20 19 18 38 38 H 1.08000 * 119.03948 * 179.97438 * 24 23 19 39 39 H 1.08998 * 113.61291 * 89.15996 * 26 13 12 40 40 H 1.08995 * 113.61558 * 220.06194 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 6 1.7303 -6.2001 0.1228 13 6 0.7051 -6.6996 -0.9090 14 7 1.2680 -7.6260 -1.8945 15 6 0.4638 -8.4940 -2.5398 16 8 -0.7277 -8.5085 -2.3038 17 6 1.0341 -9.4323 -3.5389 18 6 0.2122 -10.3360 -4.2132 19 6 0.7952 -11.1910 -5.1376 20 6 -0.0469 -12.1859 -5.8941 21 9 -0.6721 -13.0508 -4.9894 22 9 -1.0181 -11.5058 -6.6365 23 7 2.0987 -11.1208 -5.3470 24 6 2.8469 -10.2543 -4.6922 25 7 2.3376 -9.4247 -3.8070 26 6 0.6149 -5.2482 -1.4090 27 1 -0.4850 0.8400 -0.0004 28 1 0.3555 -2.3881 0.0005 29 1 2.6846 -3.7145 0.8906 30 1 2.6847 -3.7146 -0.8894 31 1 0.2373 -4.6705 0.6949 32 1 1.6159 -6.6542 1.1070 33 1 2.7589 -6.2234 -0.2373 34 1 -0.2197 -7.0662 -0.4634 35 1 2.2195 -7.6146 -2.0827 36 1 -0.8506 -10.3662 -4.0238 37 1 0.5882 -12.7620 -6.5671 38 1 3.9085 -10.2250 -4.8882 39 1 1.3378 -5.0094 -2.1890 40 1 -0.3986 -4.9349 -1.6595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755213706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:39:04 Heat of formation + Delta-G solvation = -73.958537 kcal Electronic energy + Delta-G solvation = -26041.746209 eV Core-core repulsion = 21720.653533 eV Total energy + Delta-G solvation = -4321.092676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.21988 -48.21865 -42.57258 -41.09831 -39.54729 -36.38533 -35.74254 -34.53206 -33.72320 -32.77912 -28.99083 -28.58242 -26.71451 -26.66165 -25.15370 -24.71450 -23.02884 -21.84864 -20.89767 -19.72652 -19.46953 -19.01900 -18.47534 -18.16062 -17.51681 -16.98529 -16.85934 -16.70776 -16.67615 -16.17873 -16.17395 -15.62271 -15.43034 -15.13878 -15.05901 -14.83236 -14.59517 -14.57284 -14.07577 -13.39143 -13.29947 -13.05258 -12.95125 -12.72212 -12.66225 -12.38955 -12.27554 -12.21564 -12.17505 -11.90100 -11.60317 -11.41472 -11.30719 -11.15440 -10.87919 -10.72469 -10.17287 -8.97716 -7.94234 -5.22899 -0.94924 -0.59306 1.39859 1.47094 1.50538 1.56681 1.67496 1.92392 2.41198 2.56626 2.63738 2.92669 3.04802 3.29643 3.38321 3.52276 3.55481 3.57620 3.77728 3.79037 3.86368 3.88987 4.02064 4.26828 4.30581 4.52386 4.65184 4.79397 4.87815 4.88516 4.95041 4.97618 5.04817 5.21023 5.32604 5.37221 5.49033 5.59409 6.24872 6.28265 6.56126 6.88744 7.33920 8.12325 8.34121 9.29262 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.025321 B = 0.001893 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.535819 B =14784.968642 C =14813.168600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.975 3.025 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.246 4.246 8 H 0.077 0.923 9 N -0.747 5.747 10 C 0.163 3.837 11 C -0.112 4.112 12 C -0.112 4.112 13 C 0.125 3.875 14 N -0.678 5.678 15 C 0.565 3.435 16 O -0.556 6.556 17 C 0.132 3.868 18 C -0.146 4.146 19 C 0.102 3.898 20 C 0.329 3.671 21 F -0.195 7.195 22 F -0.196 7.196 23 N -0.478 5.478 24 C 0.305 3.695 25 N -0.483 5.483 26 C -0.141 4.141 27 H 0.251 0.749 28 H 0.373 0.627 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.422 0.578 36 H 0.162 0.838 37 H 0.179 0.821 38 H 0.254 0.746 39 H 0.084 0.916 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.576 -29.833 -11.373 32.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.095 0.905 9 N -0.390 5.390 10 C 0.037 3.963 11 C -0.132 4.132 12 C -0.151 4.151 13 C 0.021 3.979 14 N -0.328 5.328 15 C 0.349 3.651 16 O -0.433 6.433 17 C -0.017 4.017 18 C -0.169 4.169 19 C -0.049 4.049 20 C 0.274 3.726 21 F -0.176 7.176 22 F -0.177 7.177 23 N -0.192 5.192 24 C 0.018 3.982 25 N -0.199 5.199 26 C -0.180 4.180 27 H 0.059 0.941 28 H 0.204 0.796 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.261 0.739 36 H 0.179 0.821 37 H 0.196 0.804 38 H 0.270 0.730 39 H 0.103 0.897 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.832 -29.684 -11.330 32.499 hybrid contribution -0.974 1.357 0.178 1.680 sum 5.858 -28.327 -11.151 31.001 Atomic orbital electron populations 1.69820 1.06685 1.26109 1.59593 1.25619 0.96435 1.01287 1.03864 0.85182 0.77155 0.79004 0.78253 1.20339 1.22294 1.20230 1.19638 0.91561 0.85460 1.41090 0.90510 1.42608 1.05639 1.01360 1.89347 1.20790 0.93533 0.84225 0.97723 1.22466 0.98911 0.94387 0.97404 1.23238 0.99083 0.93239 0.99524 1.22605 0.98837 0.87030 0.89435 1.45801 1.12483 1.34748 1.39802 1.18009 0.85837 0.80501 0.80721 1.90815 1.15979 1.70993 1.65483 1.21526 0.90466 0.94536 0.95144 1.22816 1.03993 0.94683 0.95444 1.22365 0.92405 0.95696 0.94394 1.20479 0.83396 0.83902 0.84776 1.93056 1.84477 1.70093 1.70005 1.93058 1.66180 1.81657 1.76850 1.68085 1.04655 1.21818 1.24650 1.25967 1.02442 0.84264 0.85535 1.68408 1.11786 1.23359 1.16369 1.23482 1.01595 0.95361 0.97513 0.94069 0.79596 0.95822 0.95823 0.89689 0.88834 0.87548 0.87266 0.73910 0.82081 0.80433 0.73030 0.89743 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 2 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 3 Si 0.98 46.42 29.55 68.60 2.03 48.45 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.25 -13.83 9.99 84.04 0.84 -12.99 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 9 N -0.75 -38.25 5.60 -343.44 -1.92 -40.17 16 10 C 0.16 6.28 6.10 86.38 0.53 6.81 16 11 C -0.11 -3.37 3.75 -10.21 -0.04 -3.41 16 12 C -0.11 -2.34 7.39 31.12 0.23 -2.11 16 13 C 0.13 2.91 4.21 45.52 0.19 3.10 16 14 N -0.68 -13.95 5.36 -442.32 -2.37 -16.32 16 15 C 0.57 13.53 7.83 86.97 0.68 14.21 16 16 O -0.56 -17.05 16.04 -3.64 -0.06 -17.11 16 17 C 0.13 2.56 6.79 41.99 0.29 2.85 16 18 C -0.15 -2.65 9.32 22.71 0.21 -2.44 16 19 C 0.10 1.44 6.31 42.63 0.27 1.71 16 20 C 0.33 3.49 5.58 71.24 0.40 3.89 16 21 F -0.20 -2.73 17.27 44.97 0.78 -1.96 16 22 F -0.20 -2.88 17.27 44.97 0.78 -2.10 16 23 N -0.48 -5.84 10.35 -188.11 -1.95 -7.79 16 24 C 0.30 3.18 12.27 180.92 2.22 5.40 16 25 N -0.48 -7.32 9.70 -189.16 -1.84 -9.15 16 26 C -0.14 -4.06 7.45 31.18 0.23 -3.83 16 27 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 28 H 0.37 20.47 7.67 -92.71 -0.71 19.76 16 29 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.02 0.90 7.85 -2.39 -0.02 0.88 16 31 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.11 1.86 8.07 -2.38 -0.02 1.84 16 34 H 0.11 2.77 7.50 -2.39 -0.02 2.75 16 35 H 0.42 6.89 8.10 -92.71 -0.75 6.14 16 36 H 0.16 3.05 7.74 -2.91 -0.02 3.03 16 37 H 0.18 0.56 8.12 -2.39 -0.02 0.54 16 38 H 0.25 0.36 8.06 -2.91 -0.02 0.33 16 39 H 0.08 2.45 7.90 -2.39 -0.02 2.43 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -73.44 357.72 1.89 -71.55 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.35 Total: 25.75 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 6.51 Total: 9.00 kcal Atomic # 7 Polarization: -125.78 SS G_CDS: -7.79 Total: -133.57 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.06 Total: -17.11 kcal Atomic # 9 Polarization: -5.61 SS G_CDS: 1.55 Total: -4.06 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -73.44 1.89 -71.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755213706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.410 kcal (2) G-P(sol) polarization free energy of solvation -73.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds