Wall clock time and date at job start Sat Apr 11 2020 01:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 S 1.81401 * 109.46759 * 2 1 4 4 C 1.76200 * 102.99713 * 180.02562 * 3 2 1 5 5 C 1.38840 * 120.09111 * 359.97406 * 4 3 2 6 6 C 1.38183 * 120.02934 * 180.02562 * 5 4 3 7 7 C 1.38302 * 120.20887 * 0.02562 * 6 5 4 8 8 C 1.38441 * 120.17951 * 359.74818 * 7 6 5 9 9 F 1.35105 * 120.01363 * 180.25376 * 8 7 6 10 10 C 1.38821 * 119.96653 * 0.48544 * 8 7 6 11 11 N 1.40339 * 120.09851 * 179.79159 * 10 8 7 12 12 C 1.34780 * 120.00406 * 273.68562 * 11 10 8 13 13 O 1.21594 * 119.99260 * 355.11378 * 12 11 10 14 14 N 1.34771 * 119.99987 * 175.10795 * 12 11 10 15 15 C 1.46496 * 120.00503 * 359.72583 * 14 12 11 16 16 C 1.53001 * 109.47026 * 89.99902 * 15 14 12 17 17 C 1.46500 * 119.99624 * 180.02562 * 14 12 11 18 18 C 1.50698 * 109.47585 * 90.00062 * 17 14 12 19 19 H 1.08001 * 119.99493 * 359.97438 * 18 17 14 20 20 C 1.37874 * 120.00512 * 179.97438 * 18 17 14 21 21 N 1.31509 * 119.99893 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00099 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46992 * 90.00146 * 22 20 18 24 24 H 1.48499 * 109.46827 * 210.00310 * 22 20 18 25 25 H 1.48494 * 109.46942 * 330.00162 * 22 20 18 26 26 H 1.08992 * 109.47087 * 60.00288 * 1 2 3 27 27 H 1.08994 * 109.46689 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46826 * 300.00252 * 1 2 3 29 29 H 1.08991 * 109.47366 * 239.99589 * 2 1 3 30 30 H 1.09000 * 109.46820 * 119.99448 * 2 1 3 31 31 H 1.07997 * 119.98601 * 0.02562 * 5 4 3 32 32 H 1.07998 * 119.89680 * 180.02562 * 6 5 4 33 33 H 1.07995 * 119.90827 * 179.97438 * 7 6 5 34 34 H 0.97006 * 120.00083 * 93.69249 * 11 10 8 35 35 H 1.08997 * 109.47776 * 209.99956 * 15 14 12 36 36 H 1.09003 * 109.46863 * 330.00221 * 15 14 12 37 37 H 1.08998 * 109.47007 * 59.99948 * 16 15 14 38 38 H 1.08998 * 109.47056 * 180.02562 * 16 15 14 39 39 H 1.09003 * 109.47338 * 300.00064 * 16 15 14 40 40 H 1.08996 * 109.47290 * 210.00083 * 17 14 12 41 41 H 1.09000 * 109.47443 * 329.99851 * 17 14 12 42 42 H 0.97000 * 120.00313 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.8854 1.5117 -0.0008 5 6 4.4417 0.2397 -0.0006 6 6 5.8149 0.0854 -0.0007 7 6 6.6398 1.1955 -0.0004 8 6 6.0944 2.4679 -0.0052 9 9 6.9034 3.5500 -0.0100 10 6 4.7159 2.6314 -0.0002 11 7 4.1600 3.9201 -0.0007 12 6 3.9664 4.5710 1.1635 13 8 4.1898 4.0092 2.2185 14 7 3.5254 5.8445 1.1582 15 6 3.2621 6.5233 -0.1130 16 6 1.8076 6.2878 -0.5252 17 6 3.3155 6.5521 2.4237 18 6 4.5856 7.2595 2.8204 19 1 5.4618 7.1886 2.1929 20 6 4.6293 7.9971 3.9845 21 7 3.5627 8.0830 4.7489 22 14 6.2040 8.8733 4.4765 23 1 6.2089 10.2426 3.9018 24 1 6.2817 8.9575 5.9571 25 1 7.3732 8.1163 3.9617 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8009 -0.6297 -0.0005 32 1 6.2453 -0.9051 -0.0010 33 1 7.7124 1.0693 0.0000 34 1 3.9150 4.3423 -0.8390 35 1 3.4382 7.5927 0.0028 36 1 3.9262 6.1267 -0.8810 37 1 1.1435 6.6843 0.2428 38 1 1.6118 6.7925 -1.4712 39 1 1.6314 5.2183 -0.6411 40 1 2.5154 7.2824 2.3033 41 1 3.0408 5.8368 3.1989 42 1 3.5934 8.6016 5.5680 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353963799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:08 Heat of formation + Delta-G solvation = -42.215743 kcal Electronic energy + Delta-G solvation = -25898.255921 eV Core-core repulsion = 22112.460141 eV Total energy + Delta-G solvation = -3785.795780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.73328 -39.93161 -38.48232 -35.31391 -34.39129 -33.14059 -32.62326 -30.86723 -30.03322 -29.45917 -26.77642 -24.24722 -23.26215 -23.02866 -22.91316 -21.73429 -19.44241 -18.27264 -17.63583 -16.82809 -16.68514 -16.27915 -15.94404 -15.39316 -15.29579 -15.08585 -14.85565 -14.43331 -14.31718 -13.95961 -13.53307 -13.43201 -13.11388 -12.73795 -12.57727 -12.47361 -12.31183 -12.07463 -11.95832 -11.73081 -11.64230 -11.37025 -11.11937 -10.85876 -10.72631 -10.45976 -10.22236 -10.05339 -9.82215 -9.57537 -9.25711 -9.01034 -8.70219 -8.35395 -7.56418 -7.45957 -5.96116 -3.99912 0.96058 1.04639 1.34053 2.32064 3.19019 3.35741 3.42124 3.45562 3.49429 3.97114 4.24833 4.47166 4.59921 4.60620 4.63491 4.69322 4.92804 5.07635 5.13021 5.28304 5.37613 5.38875 5.40623 5.49408 5.67052 5.70383 5.77667 5.79580 5.91859 6.00171 6.05762 6.14080 6.28302 6.53250 6.55798 6.84135 7.10799 7.43626 7.62823 7.76189 8.03157 8.33236 8.72277 9.01664 9.40830 9.65694 11.11776 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.004165 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.521054 B = 6721.744881 C = 7788.736805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 S -0.072 6.072 4 C -0.057 4.057 5 C -0.146 4.146 6 C -0.072 4.072 7 C -0.159 4.159 8 C 0.127 3.873 9 F -0.126 7.126 10 C 0.151 3.849 11 N -0.709 5.709 12 C 0.708 3.292 13 O -0.571 6.571 14 N -0.607 5.607 15 C 0.108 3.892 16 C -0.171 4.171 17 C 0.263 3.737 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.401 0.599 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.033 0.967 41 H 0.044 0.956 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.894 -16.897 -15.847 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.273 4.273 3 S 0.173 5.827 4 C -0.173 4.173 5 C -0.171 4.171 6 C -0.092 4.092 7 C -0.181 4.181 8 C 0.104 3.896 9 F -0.104 7.104 10 C 0.050 3.950 11 N -0.367 5.367 12 C 0.411 3.589 13 O -0.446 6.446 14 N -0.342 5.342 15 C -0.017 4.017 16 C -0.229 4.229 17 C 0.143 3.857 18 C -0.563 4.563 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.724 3.276 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.148 0.852 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.240 0.760 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.604 -16.118 -14.830 22.197 hybrid contribution 1.825 -0.155 -0.025 1.831 sum -1.779 -16.273 -14.855 22.105 Atomic orbital electron populations 1.21492 0.91705 1.02818 1.03507 1.23707 1.00730 0.97378 1.05477 1.85937 0.95933 1.09706 1.91125 1.21999 0.97855 0.95161 1.02244 1.21048 0.95907 0.95056 1.05095 1.20855 0.92542 0.98398 0.97375 1.21072 1.01249 0.90467 1.05338 1.17921 0.87214 0.83762 1.00677 1.91540 1.72053 1.53452 1.93343 1.16626 0.88823 0.84673 1.04834 1.42725 1.69853 1.14880 1.09284 1.15837 0.78529 0.81788 0.82791 1.90911 1.57192 1.67097 1.29399 1.47512 1.67914 1.10161 1.08605 1.21347 0.95011 0.99429 0.85889 1.22254 0.97864 1.01609 1.01200 1.19189 0.96490 0.91336 0.78664 1.21491 0.97981 1.29766 1.07018 0.92514 1.24909 0.96472 0.96636 0.96037 1.69932 1.28414 1.41272 1.13920 0.86522 0.83772 0.79644 0.77655 1.20699 1.21136 1.19916 0.91572 0.90822 0.91318 0.89511 0.89313 0.85190 0.84667 0.84301 0.76006 0.89672 0.92534 0.91874 0.92242 0.92885 0.94887 0.93825 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.92 37.16 0.37 -0.65 16 2 C -0.12 -1.09 5.05 37.16 0.19 -0.91 16 3 S -0.07 -0.96 21.33 -107.50 -2.29 -3.25 16 4 C -0.06 -0.83 6.12 -38.92 -0.24 -1.07 16 5 C -0.15 -1.66 9.36 -39.38 -0.37 -2.03 16 6 C -0.07 -0.74 10.04 -39.58 -0.40 -1.14 16 7 C -0.16 -1.97 10.02 -39.48 -0.40 -2.37 16 8 C 0.13 2.06 7.31 -39.29 -0.29 1.77 16 9 F -0.13 -2.29 17.07 2.25 0.04 -2.25 16 10 C 0.15 2.54 5.31 -83.31 -0.44 2.10 16 11 N -0.71 -12.72 4.23 -14.00 -0.06 -12.78 16 12 C 0.71 16.21 8.24 -86.92 -0.72 15.50 16 13 O -0.57 -15.80 15.90 5.28 0.08 -15.72 16 14 N -0.61 -13.62 2.46 -180.81 -0.44 -14.06 16 15 C 0.11 1.83 5.85 -4.04 -0.02 1.80 16 16 C -0.17 -2.41 10.24 37.16 0.38 -2.03 16 17 C 0.26 7.13 5.16 -5.19 -0.03 7.10 16 18 C -0.52 -15.42 9.39 -34.44 -0.32 -15.74 16 19 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 20 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 21 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 22 Si 0.90 22.62 29.54 -169.99 -5.02 17.60 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.61 7.75 -51.93 -0.40 0.21 16 30 H 0.09 0.76 7.75 -51.92 -0.40 0.35 16 31 H 0.13 1.11 5.88 -52.49 -0.31 0.80 16 32 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.40 6.04 6.64 -40.82 -0.27 5.77 16 35 H 0.08 1.49 8.07 -51.93 -0.42 1.07 16 36 H 0.06 0.82 6.45 -51.93 -0.34 0.49 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.03 0.89 8.07 -51.93 -0.42 0.48 16 41 H 0.04 1.34 7.42 -51.93 -0.39 0.96 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -36.10 371.70 -9.61 -45.71 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.87 Total: 1.63 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -2.38 Total: 4.04 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.23 Total: -53.37 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.08 Total: -15.72 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -2.29 Total: -3.25 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.10 -9.61 -45.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353963799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.491 kcal (2) G-P(sol) polarization free energy of solvation -36.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds