Wall clock time and date at job start Sat Apr 11 2020 01:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 S 1.81401 * 109.46759 * 2 1 4 4 C 1.76200 * 102.99713 * 180.02562 * 3 2 1 5 5 C 1.38840 * 120.09111 * 359.97406 * 4 3 2 6 6 C 1.38183 * 120.02934 * 180.02562 * 5 4 3 7 7 C 1.38302 * 120.20887 * 0.02562 * 6 5 4 8 8 C 1.38441 * 120.17951 * 359.74818 * 7 6 5 9 9 F 1.35105 * 120.01363 * 180.25376 * 8 7 6 10 10 C 1.38821 * 119.96653 * 0.48544 * 8 7 6 11 11 N 1.40339 * 120.09851 * 179.79159 * 10 8 7 12 12 C 1.34780 * 120.00406 * 273.68562 * 11 10 8 13 13 O 1.21594 * 119.99260 * 355.11378 * 12 11 10 14 14 N 1.34771 * 119.99987 * 175.10795 * 12 11 10 15 15 C 1.46496 * 120.00503 * 359.72583 * 14 12 11 16 16 C 1.53001 * 109.47026 * 89.99902 * 15 14 12 17 17 C 1.46500 * 119.99624 * 180.02562 * 14 12 11 18 18 C 1.50698 * 109.47585 * 90.00062 * 17 14 12 19 19 H 1.08001 * 119.99493 * 359.97438 * 18 17 14 20 20 C 1.37874 * 120.00512 * 179.97438 * 18 17 14 21 21 N 1.31509 * 119.99893 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00099 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46992 * 90.00146 * 22 20 18 24 24 H 1.48499 * 109.46827 * 210.00310 * 22 20 18 25 25 H 1.48494 * 109.46942 * 330.00162 * 22 20 18 26 26 H 1.08992 * 109.47087 * 60.00288 * 1 2 3 27 27 H 1.08994 * 109.46689 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46826 * 300.00252 * 1 2 3 29 29 H 1.08991 * 109.47366 * 239.99589 * 2 1 3 30 30 H 1.09000 * 109.46820 * 119.99448 * 2 1 3 31 31 H 1.07997 * 119.98601 * 0.02562 * 5 4 3 32 32 H 1.07998 * 119.89680 * 180.02562 * 6 5 4 33 33 H 1.07995 * 119.90827 * 179.97438 * 7 6 5 34 34 H 0.97006 * 120.00083 * 93.69249 * 11 10 8 35 35 H 1.08997 * 109.47776 * 209.99956 * 15 14 12 36 36 H 1.09003 * 109.46863 * 330.00221 * 15 14 12 37 37 H 1.08998 * 109.47007 * 59.99948 * 16 15 14 38 38 H 1.08998 * 109.47056 * 180.02562 * 16 15 14 39 39 H 1.09003 * 109.47338 * 300.00064 * 16 15 14 40 40 H 1.08996 * 109.47290 * 210.00083 * 17 14 12 41 41 H 1.09000 * 109.47443 * 329.99851 * 17 14 12 42 42 H 0.97000 * 120.00313 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.8854 1.5117 -0.0008 5 6 4.4417 0.2397 -0.0006 6 6 5.8149 0.0854 -0.0007 7 6 6.6398 1.1955 -0.0004 8 6 6.0944 2.4679 -0.0052 9 9 6.9034 3.5500 -0.0100 10 6 4.7159 2.6314 -0.0002 11 7 4.1600 3.9201 -0.0007 12 6 3.9664 4.5710 1.1635 13 8 4.1898 4.0092 2.2185 14 7 3.5254 5.8445 1.1582 15 6 3.2621 6.5233 -0.1130 16 6 1.8076 6.2878 -0.5252 17 6 3.3155 6.5521 2.4237 18 6 4.5856 7.2595 2.8204 19 1 5.4618 7.1886 2.1929 20 6 4.6293 7.9971 3.9845 21 7 3.5627 8.0830 4.7489 22 14 6.2040 8.8733 4.4765 23 1 6.2089 10.2426 3.9018 24 1 6.2817 8.9575 5.9571 25 1 7.3732 8.1163 3.9617 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8009 -0.6297 -0.0005 32 1 6.2453 -0.9051 -0.0010 33 1 7.7124 1.0693 0.0000 34 1 3.9150 4.3423 -0.8390 35 1 3.4382 7.5927 0.0028 36 1 3.9262 6.1267 -0.8810 37 1 1.1435 6.6843 0.2428 38 1 1.6118 6.7925 -1.4712 39 1 1.6314 5.2183 -0.6411 40 1 2.5154 7.2824 2.3033 41 1 3.0408 5.8368 3.1989 42 1 3.5934 8.6016 5.5680 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353963799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:07 Heat of formation + Delta-G solvation = -64.184250 kcal Electronic energy + Delta-G solvation = -25899.208547 eV Core-core repulsion = 22112.460141 eV Total energy + Delta-G solvation = -3786.748406 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.00191 -41.46521 -39.72143 -37.04169 -35.93067 -34.77532 -33.80144 -31.86295 -31.65203 -30.73282 -28.73394 -25.41568 -24.75930 -24.35101 -24.07292 -22.98983 -21.07090 -19.56266 -19.02902 -18.56676 -18.20408 -17.80558 -17.00216 -16.83577 -16.65835 -16.26018 -16.01738 -15.78626 -15.75209 -15.24187 -15.15064 -14.69173 -14.59183 -14.31519 -13.70375 -13.59602 -13.42678 -13.30566 -13.23207 -13.10309 -12.94313 -12.72659 -12.52518 -12.37974 -12.27327 -12.21292 -12.00084 -11.74578 -11.17603 -11.11052 -10.77774 -10.63999 -10.52729 -9.81939 -9.43378 -8.47342 -8.22047 -6.36669 -0.05493 -0.00179 0.41513 1.34035 1.37591 1.45682 1.48031 1.73734 2.21043 2.38211 2.42878 2.97709 3.07149 3.22826 3.82961 3.98886 3.99854 4.00169 4.02774 4.22042 4.26704 4.35087 4.49444 4.50005 4.68787 4.82931 4.84335 4.88586 4.93434 4.96503 4.99581 5.05358 5.18380 5.20302 5.22849 5.34143 5.46666 5.56564 5.75312 5.86049 6.01117 6.07370 6.71580 7.05207 7.30145 7.67946 8.84737 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.004165 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.521054 B = 6721.744881 C = 7788.736805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 S -0.136 6.136 4 C -0.065 4.065 5 C -0.139 4.139 6 C -0.054 4.054 7 C -0.156 4.156 8 C 0.091 3.909 9 F -0.149 7.149 10 C 0.108 3.892 11 N -0.688 5.688 12 C 0.708 3.292 13 O -0.629 6.629 14 N -0.614 5.614 15 C 0.101 3.899 16 C -0.158 4.158 17 C 0.282 3.718 18 C -0.544 4.544 19 H 0.046 0.954 20 C 0.011 3.989 21 N -0.926 5.926 22 Si 0.966 3.034 23 H -0.260 1.260 24 H -0.277 1.277 25 H -0.278 1.278 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.165 0.835 32 H 0.185 0.815 33 H 0.164 0.836 34 H 0.413 0.587 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.028 0.972 41 H -0.004 1.004 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.234 -19.123 -17.553 26.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.255 4.255 3 S 0.109 5.891 4 C -0.180 4.180 5 C -0.163 4.163 6 C -0.073 4.073 7 C -0.178 4.178 8 C 0.068 3.932 9 F -0.127 7.127 10 C 0.009 3.991 11 N -0.345 5.345 12 C 0.410 3.590 13 O -0.509 6.509 14 N -0.348 5.348 15 C -0.021 4.021 16 C -0.217 4.217 17 C 0.161 3.839 18 C -0.582 4.582 19 H 0.065 0.935 20 C -0.188 4.188 21 N -0.566 5.566 22 Si 0.791 3.209 23 H -0.185 1.185 24 H -0.203 1.203 25 H -0.204 1.204 26 H 0.085 0.915 27 H 0.120 0.880 28 H 0.071 0.929 29 H 0.131 0.869 30 H 0.114 0.886 31 H 0.183 0.817 32 H 0.202 0.798 33 H 0.181 0.819 34 H 0.253 0.747 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.117 0.883 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.014 0.986 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.960 -18.341 -16.625 24.931 hybrid contribution 1.558 0.374 0.460 1.667 sum -1.402 -17.967 -16.165 24.209 Atomic orbital electron populations 1.21535 0.90804 1.04315 1.02798 1.23828 1.01191 0.93472 1.06982 1.86127 0.96514 1.15280 1.91208 1.22123 0.97769 0.95686 1.02445 1.21561 0.97030 0.94741 1.02989 1.21437 0.91875 0.99770 0.94242 1.21469 1.02952 0.89353 1.04016 1.18404 0.87060 0.84691 1.03007 1.91470 1.72562 1.54826 1.93861 1.17013 0.89668 0.84489 1.07961 1.42299 1.68832 1.15447 1.07944 1.15985 0.77943 0.81706 0.83367 1.90843 1.59681 1.68479 1.31889 1.47406 1.68017 1.10420 1.09004 1.21665 0.97646 0.98797 0.84021 1.22145 0.95086 1.02063 1.02370 1.18608 0.95592 0.89908 0.79837 1.21698 0.98297 1.30588 1.07655 0.93544 1.25808 1.00053 0.97210 0.95761 1.70044 1.30460 1.41761 1.14316 0.85441 0.78912 0.79017 0.77577 1.18509 1.20261 1.20362 0.91498 0.87962 0.92921 0.86910 0.88640 0.81746 0.79799 0.81857 0.74694 0.90178 0.89892 0.93699 0.88301 0.92786 0.95399 0.98591 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.92 71.98 0.71 -1.04 16 2 C -0.11 -1.61 5.05 71.98 0.36 -1.24 16 3 S -0.14 -3.60 21.33 -56.49 -1.21 -4.80 16 4 C -0.07 -1.84 6.12 22.70 0.14 -1.70 16 5 C -0.14 -2.72 9.36 22.40 0.21 -2.51 16 6 C -0.05 -0.90 10.04 22.27 0.22 -0.68 16 7 C -0.16 -3.57 10.02 22.33 0.22 -3.34 16 8 C 0.09 2.98 7.31 22.46 0.16 3.14 16 9 F -0.15 -5.64 17.07 44.97 0.77 -4.87 16 10 C 0.11 3.72 5.31 38.20 0.20 3.92 16 11 N -0.69 -25.70 4.23 -316.48 -1.34 -27.04 16 12 C 0.71 34.23 8.24 179.06 1.48 35.71 16 13 O -0.63 -37.17 15.90 -4.01 -0.06 -37.23 16 14 N -0.61 -29.04 2.46 -844.21 -2.07 -31.12 16 15 C 0.10 3.50 5.85 86.38 0.51 4.00 16 16 C -0.16 -4.43 10.24 71.98 0.74 -3.69 16 17 C 0.28 16.29 5.16 85.63 0.44 16.73 16 18 C -0.54 -33.37 9.39 25.60 0.24 -33.13 16 19 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 20 C 0.01 0.65 5.46 84.65 0.46 1.11 16 21 N -0.93 -57.90 13.29 21.45 0.28 -57.61 16 22 Si 0.97 47.14 29.54 68.60 2.03 49.17 16 23 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 25 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.11 1.14 7.75 -2.39 -0.02 1.12 16 30 H 0.10 1.34 7.75 -2.39 -0.02 1.32 16 31 H 0.17 2.02 5.88 -2.91 -0.02 2.00 16 32 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.41 12.80 6.64 -92.70 -0.62 12.18 16 35 H 0.08 2.84 8.07 -2.39 -0.02 2.83 16 36 H 0.08 2.40 6.45 -2.39 -0.02 2.39 16 37 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 41 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 42 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -85.36 371.70 4.92 -80.43 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.42 Total: 15.78 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 6.10 Total: 17.29 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -3.13 Total: -115.77 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -0.06 Total: -37.23 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.77 Total: -4.87 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.21 Total: -4.80 kcal Total: -85.36 4.92 -80.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353963799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.250 kcal (2) G-P(sol) polarization free energy of solvation -85.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds