Wall clock time and date at job start Sat Apr 11 2020 01:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47310 * 2 1 4 4 C 1.50702 * 109.47396 * 119.99922 * 2 1 3 5 5 H 1.08005 * 119.99977 * 119.99686 * 4 2 1 6 6 C 1.37872 * 119.99867 * 299.99982 * 4 2 1 7 7 N 1.31517 * 120.00275 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99909 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.46993 * 90.00270 * 8 6 4 10 10 H 1.48507 * 109.47056 * 210.00081 * 8 6 4 11 11 H 1.48495 * 109.47094 * 329.99606 * 8 6 4 12 12 N 1.46502 * 109.47047 * 239.99580 * 2 1 3 13 13 C 1.46493 * 120.00146 * 300.00094 * 12 2 1 14 14 S 1.65605 * 119.99848 * 119.99893 * 12 2 1 15 15 O 1.42094 * 106.40080 * 156.46278 * 14 12 2 16 16 O 1.42097 * 106.40373 * 23.53969 * 14 12 2 17 17 N 1.65604 * 107.21780 * 270.00288 * 14 12 2 18 18 C 1.46503 * 120.00024 * 64.99921 * 17 14 12 19 19 C 1.52996 * 109.47018 * 164.99921 * 18 17 14 20 20 H 1.09004 * 110.01819 * 53.60851 * 19 18 17 21 21 C 1.54268 * 110.03561 * 292.16856 * 19 18 17 22 22 C 1.54882 * 104.19625 * 217.10413 * 21 19 18 23 23 C 1.54897 * 102.74839 * 37.94120 * 22 21 19 24 24 C 1.53876 * 110.03269 * 174.99649 * 19 18 17 25 25 F 1.39895 * 110.03223 * 0.02562 * 24 19 18 26 26 F 1.39900 * 110.03557 * 238.56926 * 24 19 18 27 27 H 1.08998 * 109.47356 * 60.00197 * 1 2 3 28 28 H 1.09003 * 109.47017 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47083 * 299.99848 * 1 2 3 30 30 H 0.96998 * 120.00058 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.47222 * 269.99465 * 13 12 2 32 32 H 1.08998 * 109.47435 * 30.00099 * 13 12 2 33 33 H 1.09003 * 109.47144 * 150.00154 * 13 12 2 34 34 H 0.97001 * 119.99763 * 244.99581 * 17 14 12 35 35 H 1.08996 * 109.46939 * 45.00327 * 18 17 14 36 36 H 1.09004 * 109.46839 * 285.00031 * 18 17 14 37 37 H 1.08997 * 110.48664 * 98.42161 * 21 19 18 38 38 H 1.09002 * 110.48180 * 335.78436 * 21 19 18 39 39 H 1.08994 * 110.76048 * 279.62794 * 22 21 19 40 40 H 1.09004 * 110.75771 * 156.25188 * 22 21 19 41 41 H 1.08996 * 110.48686 * 80.73681 * 23 22 21 42 42 H 1.08997 * 110.48405 * 203.24641 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5566 8 14 0.6259 1.2799 2.6540 9 1 -0.8020 0.8745 2.6993 10 1 0.9773 1.9955 3.9070 11 1 0.8492 2.1774 1.4922 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9703 0.1141 -2.2863 15 8 3.7117 -0.8790 -2.9815 16 8 3.5793 1.1829 -1.5750 17 7 1.9606 0.8089 -3.3999 18 6 1.0290 1.8617 -2.9875 19 6 0.4945 2.5835 -4.2261 20 1 0.0740 1.8615 -4.9263 21 6 1.6284 3.3800 -4.9042 22 6 0.9381 4.6737 -5.4029 23 6 -0.0594 4.9909 -4.2611 24 6 -0.5787 3.6077 -3.8173 25 9 -0.7579 3.5861 -2.4301 26 9 -1.7864 3.3198 -4.4621 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9033 -0.5278 4.4375 31 1 2.4157 -2.7378 -0.9716 32 1 0.6904 -2.3003 -0.9846 33 1 1.6238 -2.2853 -2.5001 34 1 1.9860 0.5188 -4.3251 35 1 1.5474 2.5751 -2.3469 36 1 0.1983 1.4175 -2.4391 37 1 2.0395 2.8191 -5.7434 38 1 2.4107 3.6184 -4.1836 39 1 0.4093 4.4934 -6.3387 40 1 1.6635 5.4793 -5.5169 41 1 0.4504 5.4895 -3.4368 42 1 -0.8786 5.6076 -4.6307 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451823845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:28 Heat of formation + Delta-G solvation = -176.632838 kcal Electronic energy + Delta-G solvation = -28051.966484 eV Core-core repulsion = 23829.572716 eV Total energy + Delta-G solvation = -4222.393768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.11545 -47.16658 -38.28815 -36.82814 -36.41954 -35.35591 -34.80279 -32.49649 -30.05760 -29.88065 -28.15624 -25.82147 -25.06642 -24.52517 -21.61309 -20.93033 -20.64507 -19.06499 -17.90646 -17.58519 -17.19135 -16.70697 -16.33351 -16.23345 -15.81530 -15.27139 -15.01952 -14.67766 -14.41674 -14.13189 -13.82382 -13.66067 -13.44851 -13.38364 -12.87197 -12.79647 -12.32718 -12.31596 -12.21546 -12.04002 -11.91415 -11.80511 -11.60705 -11.58973 -11.50767 -11.34118 -11.20954 -11.09107 -11.04271 -10.82349 -10.45590 -10.15835 -9.58406 -9.46434 -9.38455 -8.63132 -8.14001 -6.12054 -4.12734 1.03504 3.21286 3.23751 3.36280 3.37302 3.53983 3.63951 3.86117 3.97540 4.04884 4.35467 4.56754 4.66673 4.79823 4.87720 4.94492 4.99010 5.02161 5.17176 5.32945 5.38719 5.45462 5.50947 5.56739 5.63993 5.70589 5.83738 5.92718 6.02295 6.18336 6.25923 6.34993 6.46900 6.55570 6.79228 6.99879 7.27802 7.39297 7.63081 8.47287 8.92150 9.47768 11.00859 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.013588 B = 0.005224 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.161961 B = 5358.142339 C = 6583.011008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.238 3.762 3 H 0.057 0.943 4 C -0.522 4.522 5 H 0.082 0.918 6 C 0.075 3.925 7 N -0.894 5.894 8 Si 0.879 3.121 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.984 5.984 13 C 0.110 3.890 14 S 2.782 3.218 15 O -0.989 6.989 16 O -0.972 6.972 17 N -1.133 6.133 18 C 0.124 3.876 19 C -0.137 4.137 20 H 0.107 0.893 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.163 4.163 24 C 0.286 3.714 25 F -0.191 7.191 26 F -0.198 7.198 27 H 0.033 0.967 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.266 0.734 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.410 0.590 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.004 9.397 -19.333 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.134 3.866 3 H 0.075 0.925 4 C -0.561 4.561 5 H 0.100 0.900 6 C -0.128 4.128 7 N -0.532 5.532 8 Si 0.709 3.291 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.826 5.826 13 C -0.036 4.036 14 S 2.790 3.210 15 O -0.973 6.973 16 O -0.955 6.955 17 N -0.891 5.891 18 C -0.002 4.002 19 C -0.158 4.158 20 H 0.126 0.874 21 C -0.158 4.158 22 C -0.160 4.160 23 C -0.201 4.201 24 C 0.249 3.751 25 F -0.172 7.172 26 F -0.179 7.179 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.243 0.757 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.120 0.880 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.076 9.498 -18.894 21.747 hybrid contribution -1.362 0.482 0.031 1.445 sum -6.438 9.980 -18.863 22.291 Atomic orbital electron populations 1.22557 0.99163 1.01516 0.99138 1.19105 0.90328 0.93627 0.83583 0.92524 1.21139 1.32518 1.14282 0.88154 0.89987 1.24900 0.95708 0.96525 0.95705 1.69873 1.45201 1.40130 0.97953 0.86988 0.80522 0.83934 0.77640 1.20371 1.22062 1.18748 1.57424 1.70095 1.20146 1.34931 1.21184 1.01982 0.81536 0.98921 1.01920 0.73393 0.73186 0.72471 1.93568 1.69181 1.59919 1.74636 1.93597 1.73638 1.55927 1.72348 1.56198 1.57391 1.51372 1.24140 1.21310 0.93639 0.90022 0.95274 1.22994 0.95842 0.97497 0.99462 0.87443 1.22497 0.96906 0.95439 1.00947 1.22490 0.97919 0.98195 0.97420 1.23388 1.01259 0.94194 1.01241 1.21764 0.81569 0.97483 0.74301 1.93051 1.95879 1.97439 1.30829 1.93019 1.48736 1.94856 1.81241 0.94791 0.92082 0.93132 0.92449 0.92724 0.90898 0.93043 0.75733 0.89372 0.90458 0.89949 0.89645 0.90510 0.89780 0.88026 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.35 8.65 37.16 0.32 -3.03 16 2 C 0.24 5.46 2.21 -69.08 -0.15 5.31 16 3 H 0.06 1.37 5.97 -51.93 -0.31 1.06 16 4 C -0.52 -14.35 8.95 -34.44 -0.31 -14.66 16 5 H 0.08 2.45 7.89 -52.48 -0.41 2.03 16 6 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 7 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 8 Si 0.88 21.49 24.37 -169.99 -4.14 17.35 16 9 H -0.28 -6.48 6.87 56.52 0.39 -6.09 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 11 H -0.26 -6.14 6.53 56.52 0.37 -5.77 16 12 N -0.98 -19.37 3.12 -115.86 -0.36 -19.73 16 13 C 0.11 1.89 9.53 59.84 0.57 2.46 16 14 S 2.78 50.67 6.09 -107.50 -0.66 50.02 16 15 O -0.99 -19.39 17.21 -57.17 -0.98 -20.37 16 16 O -0.97 -21.13 16.17 -57.17 -0.92 -22.05 16 17 N -1.13 -14.58 5.87 -10.61 -0.06 -14.64 16 18 C 0.12 1.58 4.66 -4.04 -0.02 1.56 16 19 C -0.14 -1.32 2.82 -89.50 -0.25 -1.57 16 20 H 0.11 0.89 8.02 -51.93 -0.42 0.47 16 21 C -0.12 -0.93 6.19 -25.07 -0.16 -1.09 16 22 C -0.12 -0.77 6.91 -24.74 -0.17 -0.94 16 23 C -0.16 -1.26 6.40 -25.07 -0.16 -1.42 16 24 C 0.29 3.01 2.53 -25.61 -0.06 2.95 16 25 F -0.19 -2.55 15.45 2.25 0.03 -2.51 16 26 F -0.20 -2.26 17.04 2.25 0.04 -2.23 16 27 H 0.03 0.58 6.18 -51.93 -0.32 0.26 16 28 H 0.06 1.18 6.66 -51.93 -0.35 0.83 16 29 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 30 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.19 6.43 -51.93 -0.33 0.86 16 33 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 34 H 0.41 4.03 8.65 -34.47 -0.30 3.73 16 35 H 0.09 1.24 7.57 -51.93 -0.39 0.84 16 36 H 0.08 1.05 5.79 -51.93 -0.30 0.74 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.75 7.76 -51.93 -0.40 0.35 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.10 0.76 8.12 -51.93 -0.42 0.34 16 42 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 LS Contribution 343.19 15.07 5.17 5.17 Total: -1.00 -34.04 343.19 -7.43 -41.47 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.83 Total: 2.13 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -0.49 Total: -8.41 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.35 Total: -60.56 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -1.91 Total: -42.42 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.07 Total: -4.74 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.14 Total: 17.35 kcal Atomic # 16 Polarization: 50.67 SS G_CDS: -0.66 Total: 50.02 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.04 -7.43 -41.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451823845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.165 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds