Wall clock time and date at job start Sat Apr 11 2020 01:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47310 * 2 1 4 4 C 1.50702 * 109.47396 * 119.99922 * 2 1 3 5 5 H 1.08005 * 119.99977 * 119.99686 * 4 2 1 6 6 C 1.37872 * 119.99867 * 299.99982 * 4 2 1 7 7 N 1.31517 * 120.00275 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99909 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.46993 * 90.00270 * 8 6 4 10 10 H 1.48507 * 109.47056 * 210.00081 * 8 6 4 11 11 H 1.48495 * 109.47094 * 329.99606 * 8 6 4 12 12 N 1.46502 * 109.47047 * 239.99580 * 2 1 3 13 13 C 1.46493 * 120.00146 * 300.00094 * 12 2 1 14 14 S 1.65605 * 119.99848 * 119.99893 * 12 2 1 15 15 O 1.42094 * 106.40080 * 156.46278 * 14 12 2 16 16 O 1.42097 * 106.40373 * 23.53969 * 14 12 2 17 17 N 1.65604 * 107.21780 * 270.00288 * 14 12 2 18 18 C 1.46503 * 120.00024 * 64.99921 * 17 14 12 19 19 C 1.52996 * 109.47018 * 164.99921 * 18 17 14 20 20 H 1.09004 * 110.01819 * 53.60851 * 19 18 17 21 21 C 1.54268 * 110.03561 * 292.16856 * 19 18 17 22 22 C 1.54882 * 104.19625 * 217.10413 * 21 19 18 23 23 C 1.54897 * 102.74839 * 37.94120 * 22 21 19 24 24 C 1.53876 * 110.03269 * 174.99649 * 19 18 17 25 25 F 1.39895 * 110.03223 * 0.02562 * 24 19 18 26 26 F 1.39900 * 110.03557 * 238.56926 * 24 19 18 27 27 H 1.08998 * 109.47356 * 60.00197 * 1 2 3 28 28 H 1.09003 * 109.47017 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47083 * 299.99848 * 1 2 3 30 30 H 0.96998 * 120.00058 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.47222 * 269.99465 * 13 12 2 32 32 H 1.08998 * 109.47435 * 30.00099 * 13 12 2 33 33 H 1.09003 * 109.47144 * 150.00154 * 13 12 2 34 34 H 0.97001 * 119.99763 * 244.99581 * 17 14 12 35 35 H 1.08996 * 109.46939 * 45.00327 * 18 17 14 36 36 H 1.09004 * 109.46839 * 285.00031 * 18 17 14 37 37 H 1.08997 * 110.48664 * 98.42161 * 21 19 18 38 38 H 1.09002 * 110.48180 * 335.78436 * 21 19 18 39 39 H 1.08994 * 110.76048 * 279.62794 * 22 21 19 40 40 H 1.09004 * 110.75771 * 156.25188 * 22 21 19 41 41 H 1.08996 * 110.48686 * 80.73681 * 23 22 21 42 42 H 1.08997 * 110.48405 * 203.24641 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5566 8 14 0.6259 1.2799 2.6540 9 1 -0.8020 0.8745 2.6993 10 1 0.9773 1.9955 3.9070 11 1 0.8492 2.1774 1.4922 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9703 0.1141 -2.2863 15 8 3.7117 -0.8790 -2.9815 16 8 3.5793 1.1829 -1.5750 17 7 1.9606 0.8089 -3.3999 18 6 1.0290 1.8617 -2.9875 19 6 0.4945 2.5835 -4.2261 20 1 0.0740 1.8615 -4.9263 21 6 1.6284 3.3800 -4.9042 22 6 0.9381 4.6737 -5.4029 23 6 -0.0594 4.9909 -4.2611 24 6 -0.5787 3.6077 -3.8173 25 9 -0.7579 3.5861 -2.4301 26 9 -1.7864 3.3198 -4.4621 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9033 -0.5278 4.4375 31 1 2.4157 -2.7378 -0.9716 32 1 0.6904 -2.3003 -0.9846 33 1 1.6238 -2.2853 -2.5001 34 1 1.9860 0.5188 -4.3251 35 1 1.5474 2.5751 -2.3469 36 1 0.1983 1.4175 -2.4391 37 1 2.0395 2.8191 -5.7434 38 1 2.4107 3.6184 -4.1836 39 1 0.4093 4.4934 -6.3387 40 1 1.6635 5.4793 -5.5169 41 1 0.4504 5.4895 -3.4368 42 1 -0.8786 5.6076 -4.6307 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451823845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:27 Heat of formation + Delta-G solvation = -202.787163 kcal Electronic energy + Delta-G solvation = -28053.100620 eV Core-core repulsion = 23829.572716 eV Total energy + Delta-G solvation = -4223.527904 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.96081 -48.03149 -39.05767 -38.38833 -38.07854 -36.93974 -35.77177 -34.54314 -31.81375 -30.70623 -28.79212 -27.37048 -26.98708 -25.46915 -22.72412 -22.16924 -21.45633 -20.41518 -19.03329 -18.99874 -18.69058 -18.18950 -17.51558 -17.35592 -16.99061 -16.76918 -16.01423 -15.84447 -15.38030 -15.24357 -15.08979 -14.94950 -14.65513 -14.51807 -14.33489 -14.12936 -13.88607 -13.66377 -13.48455 -13.38717 -13.21880 -13.15273 -12.96540 -12.91922 -12.79124 -12.52302 -12.19800 -12.16715 -12.09300 -12.02266 -11.63356 -11.57632 -11.46608 -11.32290 -10.77188 -10.55644 -9.79535 -8.30717 -6.35522 -0.42778 1.29606 1.38082 1.45909 1.91689 2.30657 2.51044 2.78642 2.95749 3.04010 3.15041 3.24603 3.40464 3.87404 3.90774 4.00831 4.18696 4.24622 4.26268 4.40762 4.43074 4.44847 4.57593 4.66102 4.68268 4.75387 4.81296 4.85354 4.94730 5.04644 5.09046 5.11328 5.14302 5.20544 5.33674 5.49200 5.58443 5.78574 6.12988 6.33150 6.69060 7.29103 8.85992 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.013588 B = 0.005224 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.161961 B = 5358.142339 C = 6583.011008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.242 3.758 3 H 0.046 0.954 4 C -0.525 4.525 5 H 0.041 0.959 6 C 0.018 3.982 7 N -0.944 5.944 8 Si 0.935 3.065 9 H -0.255 1.255 10 H -0.298 1.298 11 H -0.247 1.247 12 N -0.993 5.993 13 C 0.104 3.896 14 S 2.799 3.201 15 O -1.004 7.004 16 O -1.010 7.010 17 N -1.106 6.106 18 C 0.118 3.882 19 C -0.131 4.131 20 H 0.126 0.874 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.162 4.162 24 C 0.274 3.726 25 F -0.211 7.211 26 F -0.204 7.204 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.267 0.733 31 H 0.033 0.967 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.428 0.572 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.676 10.893 -22.195 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.136 3.864 3 H 0.063 0.937 4 C -0.565 4.565 5 H 0.060 0.940 6 C -0.180 4.180 7 N -0.583 5.583 8 Si 0.761 3.239 9 H -0.181 1.181 10 H -0.225 1.225 11 H -0.171 1.171 12 N -0.834 5.834 13 C -0.042 4.042 14 S 2.807 3.193 15 O -0.988 6.988 16 O -0.994 6.994 17 N -0.870 5.870 18 C -0.008 4.008 19 C -0.152 4.152 20 H 0.144 0.856 21 C -0.160 4.160 22 C -0.151 4.151 23 C -0.200 4.200 24 C 0.237 3.763 25 F -0.192 7.192 26 F -0.185 7.185 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.265 0.735 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.749 10.970 -21.798 25.319 hybrid contribution -0.775 -0.055 0.848 1.150 sum -7.524 10.915 -20.950 24.792 Atomic orbital electron populations 1.22432 0.96557 1.02545 1.00325 1.18840 0.92210 0.92513 0.82837 0.93659 1.21441 1.31483 1.13100 0.90447 0.94048 1.25740 0.97279 0.99709 0.95319 1.70026 1.47375 1.42324 0.98616 0.86073 0.79722 0.80268 0.77795 1.18053 1.22534 1.17052 1.57389 1.70181 1.21262 1.34585 1.21357 1.01652 0.79962 1.01210 1.01197 0.73276 0.72455 0.72358 1.93542 1.70028 1.60509 1.74710 1.93550 1.74946 1.57162 1.73700 1.55563 1.56591 1.50804 1.24076 1.21396 0.92941 0.89624 0.96872 1.22997 0.96221 0.97697 0.98247 0.85573 1.22559 0.96027 0.96303 1.01154 1.22505 0.97703 0.97752 0.97191 1.23444 1.01991 0.92703 1.01841 1.22220 0.81465 0.99351 0.73282 1.93008 1.95998 1.97622 1.32607 1.93004 1.49231 1.95039 1.81200 0.91282 0.91255 0.94124 0.92398 0.94789 0.90067 0.89395 0.73460 0.90915 0.90973 0.88017 0.90929 0.89111 0.88301 0.88117 0.87715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.15 8.65 71.98 0.62 -5.53 16 2 C 0.24 10.98 2.21 44.24 0.10 11.07 16 3 H 0.05 2.18 5.97 -2.39 -0.01 2.16 16 4 C -0.53 -29.65 8.95 25.60 0.23 -29.42 16 5 H 0.04 2.60 7.89 -2.91 -0.02 2.58 16 6 C 0.02 1.03 5.45 84.65 0.46 1.49 16 7 N -0.94 -58.80 13.96 21.45 0.30 -58.50 16 8 Si 0.94 44.14 24.37 68.60 1.67 45.82 16 9 H -0.26 -11.09 6.87 99.48 0.68 -10.41 16 10 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 11 H -0.25 -10.90 6.53 99.48 0.65 -10.25 16 12 N -0.99 -38.46 3.12 -520.46 -1.62 -40.08 16 13 C 0.10 3.46 9.53 127.77 1.22 4.68 16 14 S 2.80 99.32 6.09 -56.49 -0.34 98.97 16 15 O -1.00 -38.19 17.21 -128.00 -2.20 -40.40 16 16 O -1.01 -43.98 16.17 -128.00 -2.07 -46.05 16 17 N -1.11 -25.84 5.87 -187.49 -1.10 -26.94 16 18 C 0.12 2.75 4.66 86.38 0.40 3.15 16 19 C -0.13 -2.13 2.82 -10.07 -0.03 -2.16 16 20 H 0.13 1.59 8.02 -2.38 -0.02 1.57 16 21 C -0.12 -1.52 6.19 31.67 0.20 -1.32 16 22 C -0.11 -1.02 6.91 31.89 0.22 -0.80 16 23 C -0.16 -2.07 6.40 31.67 0.20 -1.87 16 24 C 0.27 5.11 2.53 31.32 0.08 5.19 16 25 F -0.21 -5.29 15.45 44.97 0.69 -4.60 16 26 F -0.20 -4.15 17.04 44.97 0.77 -3.39 16 27 H 0.07 2.15 6.18 -2.39 -0.01 2.14 16 28 H 0.07 2.52 6.66 -2.39 -0.02 2.51 16 29 H 0.04 1.65 3.27 -2.38 -0.01 1.64 16 30 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 31 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.08 2.55 6.43 -2.39 -0.02 2.54 16 33 H 0.09 2.27 7.79 -2.39 -0.02 2.25 16 34 H 0.43 6.99 8.65 -96.74 -0.84 6.15 16 35 H 0.07 1.96 7.57 -2.39 -0.02 1.94 16 36 H 0.07 1.77 5.79 -2.39 -0.01 1.75 16 37 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 1.11 7.76 -2.39 -0.02 1.09 16 39 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.10 1.31 8.12 -2.39 -0.02 1.29 16 42 H 0.10 1.09 8.11 -2.39 -0.02 1.07 16 Total: -1.00 -75.91 343.19 -0.07 -75.99 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.14 Total: 14.68 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 3.70 Total: -15.51 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -2.43 Total: -125.52 kcal Atomic # 8 Polarization: -82.17 SS G_CDS: -4.27 Total: -86.45 kcal Atomic # 9 Polarization: -9.44 SS G_CDS: 1.46 Total: -7.98 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.67 Total: 45.82 kcal Atomic # 16 Polarization: 99.32 SS G_CDS: -0.34 Total: 98.97 kcal Total: -75.91 -0.07 -75.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451823845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.800 kcal (2) G-P(sol) polarization free energy of solvation -75.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds