Wall clock time and date at job start Sat Apr 11 2020 01:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47171 * 89.99544 * 8 6 4 10 10 H 1.48500 * 109.46632 * 209.99795 * 8 6 4 11 11 H 1.48494 * 109.47053 * 329.99231 * 8 6 4 12 12 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 13 13 C 1.46498 * 119.99673 * 300.00431 * 12 2 1 14 14 S 1.65593 * 119.99939 * 119.99951 * 12 2 1 15 15 O 1.42101 * 106.40455 * 203.53915 * 14 12 2 16 16 O 1.42093 * 106.40554 * 336.46252 * 14 12 2 17 17 N 1.65604 * 107.21648 * 90.00264 * 14 12 2 18 18 C 1.46498 * 120.00179 * 64.99772 * 17 14 12 19 19 C 1.52992 * 109.47311 * 164.99763 * 18 17 14 20 20 H 1.09000 * 110.02272 * 306.39658 * 19 18 17 21 21 C 1.54267 * 110.03265 * 67.83625 * 19 18 17 22 22 C 1.54883 * 104.20009 * 142.89505 * 21 19 18 23 23 C 1.54889 * 102.74693 * 322.05764 * 22 21 19 24 24 C 1.53880 * 110.03449 * 184.99913 * 19 18 17 25 25 F 1.39900 * 110.03134 * 0.02562 * 24 19 18 26 26 F 1.39902 * 110.02941 * 121.38710 * 24 19 18 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 32 32 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 33 33 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 34 34 H 0.96993 * 119.99707 * 244.99768 * 17 14 12 35 35 H 1.08997 * 109.47237 * 285.00207 * 18 17 14 36 36 H 1.09004 * 109.46812 * 45.00055 * 18 17 14 37 37 H 1.09006 * 110.48549 * 261.57267 * 21 19 18 38 38 H 1.09001 * 110.48654 * 24.21340 * 21 19 18 39 39 H 1.09002 * 110.75719 * 203.74405 * 22 21 19 40 40 H 1.09003 * 110.75769 * 80.36958 * 22 21 19 41 41 H 1.09005 * 110.48858 * 279.26312 * 23 22 21 42 42 H 1.09008 * 110.60007 * 156.67845 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3442 -0.9490 5.1122 11 1 2.4878 -2.5653 3.7123 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 16 2.9705 0.1142 -2.2862 15 8 2.8230 -0.5646 -3.5258 16 8 2.6905 1.4972 -2.1192 17 7 4.5438 -0.1043 -1.8179 18 6 5.1358 -1.4441 -1.8413 19 6 6.6578 -1.3312 -1.7333 20 1 7.0377 -0.6594 -2.5030 21 6 7.0512 -0.8108 -0.3354 22 6 8.3462 -1.5877 0.0087 23 6 8.0633 -2.9965 -0.5693 24 6 7.3014 -2.7210 -1.8820 25 9 6.3106 -3.6899 -2.0740 26 9 8.1898 -2.7245 -2.9627 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7086 1.1614 3.4844 31 1 0.7377 -2.1444 -1.9993 32 1 2.4630 -2.5819 -1.9863 33 1 1.5295 -2.5969 -0.4708 34 1 5.0734 0.6549 -1.5280 35 1 4.7541 -2.0248 -1.0016 36 1 4.8738 -1.9408 -2.7755 37 1 7.2467 0.2611 -0.3684 38 1 6.2682 -1.0345 0.3893 39 1 8.4931 -1.6351 1.0877 40 1 9.2092 -1.1357 -0.4803 41 1 7.4438 -3.5734 0.1175 42 1 8.9964 -3.5220 -0.7729 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451823846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:30 Heat of formation + Delta-G solvation = -189.664541 kcal Electronic energy + Delta-G solvation = -27900.007122 eV Core-core repulsion = 23677.048257 eV Total energy + Delta-G solvation = -4222.958865 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.05770 -47.10633 -38.14755 -36.68443 -36.15485 -35.26699 -34.62192 -32.62762 -29.73257 -29.09875 -28.03686 -25.52211 -25.20767 -24.41046 -21.50495 -20.83104 -20.45384 -18.94019 -17.82930 -17.40266 -16.93394 -16.51070 -16.39770 -16.16780 -15.68190 -15.04974 -14.78799 -14.46320 -14.38159 -13.95858 -13.73967 -13.45984 -13.36770 -13.21307 -12.88898 -12.72982 -12.18550 -12.06110 -11.96620 -11.79508 -11.69532 -11.55799 -11.44121 -11.38406 -11.23280 -11.11281 -10.98661 -10.92834 -10.88370 -10.72182 -10.44236 -10.23145 -10.10289 -9.41198 -9.16939 -8.51570 -7.98669 -6.12734 -4.21311 1.22803 3.19866 3.27641 3.28935 3.34225 3.62789 3.76476 3.98958 4.11350 4.15801 4.31473 4.68281 4.80223 4.93257 5.01090 5.06217 5.13694 5.16003 5.17862 5.43529 5.52291 5.63067 5.65856 5.68149 5.79293 5.88198 6.04174 6.09092 6.17342 6.34643 6.65467 6.86434 6.86714 7.09629 7.18839 7.50326 7.60127 7.75913 8.02556 8.23172 8.81583 9.44863 10.92282 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.005335 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.380206 B = 5247.105304 C = 6692.001934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.525 4.525 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.989 5.989 13 C 0.105 3.895 14 S 2.783 3.217 15 O -0.997 6.997 16 O -0.980 6.980 17 N -1.127 6.127 18 C 0.131 3.869 19 C -0.138 4.138 20 H 0.107 0.893 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.161 4.161 24 C 0.287 3.713 25 F -0.194 7.194 26 F -0.199 7.199 27 H 0.032 0.968 28 H 0.092 0.908 29 H 0.012 0.988 30 H 0.264 0.736 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.412 0.588 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.140 -5.958 -4.759 15.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.832 5.832 13 C -0.042 4.042 14 S 2.792 3.208 15 O -0.981 6.981 16 O -0.964 6.964 17 N -0.885 5.885 18 C 0.004 3.996 19 C -0.158 4.158 20 H 0.125 0.875 21 C -0.160 4.160 22 C -0.160 4.160 23 C -0.199 4.199 24 C 0.250 3.750 25 F -0.175 7.175 26 F -0.180 7.180 27 H 0.051 0.949 28 H 0.111 0.889 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.245 0.755 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.119 0.881 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.626 -5.537 -5.496 14.842 hybrid contribution 0.660 -0.524 1.216 1.480 sum 13.286 -6.062 -4.279 15.218 Atomic orbital electron populations 1.22051 0.97968 0.99672 1.00740 1.18732 0.91895 0.92734 0.80158 0.92347 1.21363 1.31852 1.13069 0.90128 0.91917 1.24925 0.94975 0.94982 0.98958 1.69881 1.36149 1.22605 1.23802 0.86550 0.78579 0.79924 0.82610 1.20712 1.21209 1.19931 1.57693 1.64326 1.21404 1.39784 1.21221 0.99086 0.81995 1.01872 1.01784 0.72532 0.73136 0.73351 1.93546 1.85953 1.76353 1.42235 1.93595 1.83540 1.32432 1.86880 1.56021 1.32524 1.14452 1.85548 1.21168 0.91108 0.84224 1.03056 1.22995 0.96759 0.94600 1.01493 0.87502 1.22525 0.98026 1.00824 0.94637 1.22479 0.98167 0.93410 1.01926 1.23373 1.01764 1.00201 0.94586 1.21792 0.80143 0.87801 0.85272 1.93014 1.62741 1.65774 1.95983 1.93013 1.69194 1.97032 1.58718 0.94864 0.88940 0.96890 0.92635 0.93817 0.93202 0.90144 0.75461 0.90451 0.90126 0.89893 0.89112 0.89760 0.90628 0.88064 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.97 37.16 0.33 -3.07 16 2 C 0.27 6.37 2.62 -69.08 -0.18 6.19 16 3 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 4 C -0.52 -12.96 7.99 -34.44 -0.28 -13.23 16 5 H 0.06 1.49 7.33 -52.49 -0.38 1.11 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -23.82 11.32 55.43 0.63 -23.20 16 8 Si 0.90 19.73 29.54 -169.99 -5.02 14.70 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 12 N -0.99 -20.03 3.12 -115.85 -0.36 -20.39 16 13 C 0.10 1.85 9.28 59.85 0.56 2.40 16 14 S 2.78 53.53 6.09 -107.50 -0.66 52.88 16 15 O -1.00 -20.43 16.68 -57.17 -0.95 -21.39 16 16 O -0.98 -21.92 16.70 -57.17 -0.95 -22.88 16 17 N -1.13 -17.00 5.97 -10.62 -0.06 -17.06 16 18 C 0.13 1.77 4.66 -4.05 -0.02 1.76 16 19 C -0.14 -1.51 2.88 -89.50 -0.26 -1.76 16 20 H 0.11 1.09 8.02 -51.93 -0.42 0.67 16 21 C -0.12 -1.17 5.90 -25.08 -0.15 -1.32 16 22 C -0.12 -0.95 6.91 -24.74 -0.17 -1.12 16 23 C -0.16 -1.38 6.40 -25.07 -0.16 -1.54 16 24 C 0.29 3.18 2.53 -25.61 -0.06 3.12 16 25 F -0.19 -2.50 15.45 2.25 0.03 -2.46 16 26 F -0.20 -2.40 17.04 2.25 0.04 -2.36 16 27 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 28 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.77 7.79 -51.92 -0.40 0.36 16 33 H 0.08 1.43 7.02 -51.93 -0.36 1.07 16 34 H 0.41 5.43 8.32 -34.47 -0.29 5.14 16 35 H 0.08 1.06 7.97 -51.93 -0.41 0.64 16 36 H 0.08 1.14 7.36 -51.93 -0.38 0.76 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.99 7.76 -51.93 -0.40 0.59 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.84 8.12 -51.93 -0.42 0.41 16 42 H 0.09 0.67 8.11 -51.92 -0.42 0.25 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -30.72 354.14 -8.67 -39.39 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.22 Total: 4.47 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -0.48 Total: -7.04 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.20 Total: -60.65 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -1.91 Total: -44.27 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.07 Total: -4.82 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 16 Polarization: 53.53 SS G_CDS: -0.66 Total: 52.88 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.72 -8.67 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451823846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.274 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds