Wall clock time and date at job start Sat Apr 11 2020 01:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47171 * 89.99544 * 8 6 4 10 10 H 1.48500 * 109.46632 * 209.99795 * 8 6 4 11 11 H 1.48494 * 109.47053 * 329.99231 * 8 6 4 12 12 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 13 13 C 1.46498 * 119.99673 * 300.00431 * 12 2 1 14 14 S 1.65593 * 119.99939 * 119.99951 * 12 2 1 15 15 O 1.42101 * 106.40455 * 203.53915 * 14 12 2 16 16 O 1.42093 * 106.40554 * 336.46252 * 14 12 2 17 17 N 1.65604 * 107.21648 * 90.00264 * 14 12 2 18 18 C 1.46498 * 120.00179 * 64.99772 * 17 14 12 19 19 C 1.52992 * 109.47311 * 164.99763 * 18 17 14 20 20 H 1.09000 * 110.02272 * 306.39658 * 19 18 17 21 21 C 1.54267 * 110.03265 * 67.83625 * 19 18 17 22 22 C 1.54883 * 104.20009 * 142.89505 * 21 19 18 23 23 C 1.54889 * 102.74693 * 322.05764 * 22 21 19 24 24 C 1.53880 * 110.03449 * 184.99913 * 19 18 17 25 25 F 1.39900 * 110.03134 * 0.02562 * 24 19 18 26 26 F 1.39902 * 110.02941 * 121.38710 * 24 19 18 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 32 32 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 33 33 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 34 34 H 0.96993 * 119.99707 * 244.99768 * 17 14 12 35 35 H 1.08997 * 109.47237 * 285.00207 * 18 17 14 36 36 H 1.09004 * 109.46812 * 45.00055 * 18 17 14 37 37 H 1.09006 * 110.48549 * 261.57267 * 21 19 18 38 38 H 1.09001 * 110.48654 * 24.21340 * 21 19 18 39 39 H 1.09002 * 110.75719 * 203.74405 * 22 21 19 40 40 H 1.09003 * 110.75769 * 80.36958 * 22 21 19 41 41 H 1.09005 * 110.48858 * 279.26312 * 23 22 21 42 42 H 1.09008 * 110.60007 * 156.67845 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3442 -0.9490 5.1122 11 1 2.4878 -2.5653 3.7123 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 16 2.9705 0.1142 -2.2862 15 8 2.8230 -0.5646 -3.5258 16 8 2.6905 1.4972 -2.1192 17 7 4.5438 -0.1043 -1.8179 18 6 5.1358 -1.4441 -1.8413 19 6 6.6578 -1.3312 -1.7333 20 1 7.0377 -0.6594 -2.5030 21 6 7.0512 -0.8108 -0.3354 22 6 8.3462 -1.5877 0.0087 23 6 8.0633 -2.9965 -0.5693 24 6 7.3014 -2.7210 -1.8820 25 9 6.3106 -3.6899 -2.0740 26 9 8.1898 -2.7245 -2.9627 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7086 1.1614 3.4844 31 1 0.7377 -2.1444 -1.9993 32 1 2.4630 -2.5819 -1.9863 33 1 1.5295 -2.5969 -0.4708 34 1 5.0734 0.6549 -1.5280 35 1 4.7541 -2.0248 -1.0016 36 1 4.8738 -1.9408 -2.7755 37 1 7.2467 0.2611 -0.3684 38 1 6.2682 -1.0345 0.3893 39 1 8.4931 -1.6351 1.0877 40 1 9.2092 -1.1357 -0.4803 41 1 7.4438 -3.5734 0.1175 42 1 8.9964 -3.5220 -0.7729 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451823846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:30 Heat of formation + Delta-G solvation = -210.219006 kcal Electronic energy + Delta-G solvation = -27900.898431 eV Core-core repulsion = 23677.048257 eV Total energy + Delta-G solvation = -4223.850173 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.96138 -48.02496 -39.02229 -38.32525 -37.87433 -36.92554 -35.70820 -34.48595 -30.91527 -30.66972 -28.79016 -27.23595 -27.00034 -25.43007 -22.62354 -22.20838 -21.37200 -20.39889 -18.85989 -18.77508 -18.44757 -18.21180 -17.55069 -17.35161 -16.90217 -16.61913 -15.93611 -15.68084 -15.27179 -15.16112 -14.95796 -14.76186 -14.62799 -14.46231 -14.31865 -13.83734 -13.67265 -13.45585 -13.35509 -13.23519 -13.15094 -12.96273 -12.89344 -12.73831 -12.69333 -12.60241 -12.19025 -12.14460 -12.11173 -12.00799 -11.82534 -11.62701 -11.57822 -11.17819 -10.52057 -10.46082 -9.66748 -8.06050 -6.20773 -0.31622 1.47406 1.50117 1.58640 1.94838 2.47828 2.56541 2.78254 2.96759 3.16803 3.22723 3.25508 3.48089 3.89109 3.98521 4.06739 4.19690 4.25689 4.28206 4.44929 4.54612 4.67631 4.72282 4.79373 4.81251 4.87149 4.98860 5.03407 5.06212 5.10684 5.15521 5.16666 5.26764 5.35368 5.62654 5.68740 5.85693 6.05605 6.16420 6.31441 6.88456 7.48877 8.98638 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.005335 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.380206 B = 5247.105304 C = 6692.001934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.273 3.727 3 H 0.027 0.973 4 C -0.525 4.525 5 H 0.072 0.928 6 C 0.016 3.984 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.275 1.275 10 H -0.292 1.292 11 H -0.264 1.264 12 N -0.995 5.995 13 C 0.099 3.901 14 S 2.799 3.201 15 O -1.009 7.009 16 O -1.015 7.015 17 N -1.114 6.114 18 C 0.127 3.873 19 C -0.135 4.135 20 H 0.115 0.885 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.157 4.157 24 C 0.278 3.722 25 F -0.207 7.207 26 F -0.205 7.205 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.017 0.983 30 H 0.262 0.738 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.423 0.577 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.969 -7.266 -4.237 17.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.168 3.832 3 H 0.045 0.955 4 C -0.565 4.565 5 H 0.090 0.910 6 C -0.183 4.183 7 N -0.559 5.559 8 Si 0.783 3.217 9 H -0.201 1.201 10 H -0.218 1.218 11 H -0.188 1.188 12 N -0.837 5.837 13 C -0.047 4.047 14 S 2.808 3.192 15 O -0.992 6.992 16 O -0.999 6.999 17 N -0.877 5.877 18 C 0.000 4.000 19 C -0.155 4.155 20 H 0.133 0.867 21 C -0.162 4.162 22 C -0.152 4.152 23 C -0.195 4.195 24 C 0.242 3.758 25 F -0.188 7.188 26 F -0.186 7.186 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.258 0.742 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.123 0.877 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 14.462 -6.860 -4.991 16.767 hybrid contribution 0.106 -0.128 0.969 0.983 sum 14.567 -6.988 -4.022 16.650 Atomic orbital electron populations 1.21950 0.98080 1.00015 0.99870 1.18422 0.91837 0.91517 0.81387 0.95516 1.21604 1.31428 1.13040 0.90406 0.91022 1.25682 0.95216 0.95594 1.01824 1.70023 1.37486 1.24091 1.24250 0.85565 0.77896 0.79280 0.78910 1.20098 1.21797 1.18847 1.57577 1.65118 1.22368 1.38621 1.21400 1.00375 0.80607 1.02292 1.01128 0.73094 0.72018 0.72977 1.93528 1.86530 1.76378 1.42808 1.93545 1.84508 1.34603 1.87249 1.55629 1.31040 1.15786 1.85218 1.21301 0.93057 0.82908 1.02718 1.22988 0.94632 0.95083 1.02816 0.86721 1.22545 0.98647 1.01769 0.93209 1.22488 0.97452 0.92434 1.02837 1.23410 1.02072 1.00981 0.93024 1.22136 0.80150 0.87406 0.86148 1.92987 1.63426 1.66298 1.96125 1.92999 1.69322 1.97029 1.59297 0.93802 0.91177 0.96394 0.92832 0.93076 0.91020 0.90236 0.74201 0.90482 0.90780 0.88845 0.90500 0.88474 0.89386 0.87737 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.62 8.97 71.98 0.65 -5.98 16 2 C 0.27 13.05 2.62 44.25 0.12 13.16 16 3 H 0.03 1.46 6.91 -2.39 -0.02 1.44 16 4 C -0.53 -25.64 7.99 25.60 0.20 -25.44 16 5 H 0.07 3.30 7.33 -2.91 -0.02 3.28 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -49.94 11.32 21.45 0.24 -49.69 16 8 Si 0.96 39.77 29.54 68.60 2.03 41.80 16 9 H -0.28 -11.11 7.11 99.48 0.71 -10.41 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 12 N -0.99 -39.82 3.12 -520.43 -1.62 -41.44 16 13 C 0.10 3.35 9.28 127.77 1.19 4.54 16 14 S 2.80 106.84 6.09 -56.49 -0.34 106.49 16 15 O -1.01 -40.59 16.68 -128.00 -2.14 -42.72 16 16 O -1.01 -45.94 16.70 -128.00 -2.14 -48.08 16 17 N -1.11 -32.65 5.97 -187.50 -1.12 -33.77 16 18 C 0.13 3.26 4.66 86.38 0.40 3.66 16 19 C -0.13 -2.70 2.88 -10.07 -0.03 -2.73 16 20 H 0.11 2.12 8.02 -2.39 -0.02 2.10 16 21 C -0.12 -2.10 5.90 31.67 0.19 -1.91 16 22 C -0.11 -1.44 6.91 31.88 0.22 -1.22 16 23 C -0.16 -2.27 6.40 31.67 0.20 -2.07 16 24 C 0.28 5.65 2.53 31.32 0.08 5.73 16 25 F -0.21 -5.05 15.45 44.97 0.69 -4.36 16 26 F -0.21 -4.60 17.04 44.97 0.77 -3.84 16 27 H 0.04 1.92 7.67 -2.39 -0.02 1.90 16 28 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 2.09 7.79 -2.38 -0.02 2.07 16 33 H 0.08 2.71 7.02 -2.39 -0.02 2.69 16 34 H 0.42 10.72 8.32 -96.75 -0.80 9.92 16 35 H 0.08 2.00 7.97 -2.39 -0.02 1.98 16 36 H 0.07 2.01 7.36 -2.39 -0.02 2.00 16 37 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 38 H 0.08 1.54 7.76 -2.39 -0.02 1.52 16 39 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.10 1.46 8.12 -2.38 -0.02 1.44 16 42 H 0.11 1.24 8.11 -2.38 -0.02 1.22 16 Total: -1.00 -64.87 354.14 0.26 -64.61 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.23 Total: 21.96 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 3.66 Total: -10.96 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -2.50 Total: -124.90 kcal Atomic # 8 Polarization: -86.53 SS G_CDS: -4.27 Total: -90.80 kcal Atomic # 9 Polarization: -9.66 SS G_CDS: 1.46 Total: -8.20 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Atomic # 16 Polarization: 106.84 SS G_CDS: -0.34 Total: 106.49 kcal Total: -64.87 0.26 -64.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451823846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.612 kcal (2) G-P(sol) polarization free energy of solvation -64.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds