Wall clock time and date at job start Sat Apr 11 2020 01:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46645 * 2 1 4 4 C 1.50700 * 109.47309 * 240.00532 * 2 1 3 5 5 H 1.07997 * 119.99918 * 239.99987 * 4 2 1 6 6 C 1.37877 * 120.00126 * 59.99521 * 4 2 1 7 7 N 1.31513 * 120.00274 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00103 * 0.27756 * 6 4 2 9 9 H 1.48494 * 109.47191 * 269.72622 * 8 6 4 10 10 H 1.48505 * 109.46852 * 29.72563 * 8 6 4 11 11 H 1.48500 * 109.47429 * 149.71985 * 8 6 4 12 12 N 1.46492 * 109.47089 * 119.99968 * 2 1 3 13 13 C 1.46502 * 119.99892 * 55.09971 * 12 2 1 14 14 S 1.65601 * 120.00307 * 235.09403 * 12 2 1 15 15 O 1.42104 * 106.40070 * 208.63014 * 14 12 2 16 16 O 1.42101 * 106.39764 * 341.54777 * 14 12 2 17 17 N 1.65595 * 107.22027 * 95.08768 * 14 12 2 18 18 C 1.46926 * 120.63110 * 270.63763 * 17 14 12 19 19 C 1.53196 * 108.77223 * 233.58249 * 18 17 14 20 20 C 1.53040 * 109.31390 * 305.36335 * 19 18 17 21 21 F 1.39895 * 109.45944 * 181.38882 * 20 19 18 22 22 F 1.39898 * 109.45803 * 301.36054 * 20 19 18 23 23 C 1.53039 * 109.53720 * 61.36617 * 20 19 18 24 24 C 1.46931 * 120.62962 * 90.34995 * 17 14 12 25 25 H 1.08999 * 109.58361 * 246.20550 * 24 17 14 26 26 C 1.52993 * 109.58562 * 6.62998 * 24 17 14 27 27 H 1.08994 * 109.47020 * 299.99571 * 1 2 3 28 28 H 1.08998 * 109.46990 * 59.99950 * 1 2 3 29 29 H 1.09000 * 109.47017 * 179.97438 * 1 2 3 30 30 H 0.96998 * 120.00613 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47809 * 95.53501 * 13 12 2 32 32 H 1.09006 * 109.46985 * 215.53721 * 13 12 2 33 33 H 1.09002 * 109.47111 * 335.52946 * 13 12 2 34 34 H 1.08994 * 109.58510 * 353.36761 * 18 17 14 35 35 H 1.08995 * 109.58686 * 113.79579 * 18 17 14 36 36 H 1.08997 * 109.49787 * 65.31825 * 19 18 17 37 37 H 1.08998 * 109.49686 * 185.37597 * 19 18 17 38 38 H 1.09001 * 109.49729 * 58.58577 * 23 20 19 39 39 H 1.09002 * 109.49697 * 178.68517 * 23 20 19 40 40 H 1.09011 * 109.47385 * 65.95050 * 26 24 17 41 41 H 1.09001 * 109.47219 * 185.94666 * 26 24 17 42 42 H 1.08994 * 109.47292 * 305.95186 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 2.1373 -0.8593 -3.5566 8 14 0.6316 1.2840 -2.6541 9 1 -0.7975 0.8838 -2.7034 10 1 0.8553 2.1787 -1.4901 11 1 0.9885 2.0006 -3.9049 12 7 2.0183 -0.6906 1.1961 13 6 1.5781 -2.0580 1.4835 14 16 3.0681 0.0744 2.2234 15 8 3.8501 -0.9452 2.8303 16 8 3.6316 1.1536 1.4906 17 7 2.1633 0.7525 3.4332 18 6 1.6321 2.1155 3.2967 19 6 2.0626 2.9369 4.5161 20 6 1.6231 2.2160 5.7926 21 9 1.9867 2.9790 6.9074 22 9 0.2346 2.0457 5.7772 23 6 2.3036 0.8473 5.8675 24 6 1.8712 0.0002 4.6611 25 1 0.8021 -0.2041 4.7188 26 6 2.6484 -1.3176 4.6522 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9027 -0.5282 -4.4376 31 1 2.3151 -2.7648 1.1022 32 1 1.4740 -2.1874 2.5608 33 1 0.6175 -2.2393 1.0013 34 1 2.0280 2.5728 2.3899 35 1 0.5440 2.0802 3.2455 36 1 3.1469 3.0477 4.5158 37 1 1.5963 3.9212 4.4747 38 1 3.3857 0.9778 5.8545 39 1 2.0084 0.3442 6.7883 40 1 3.7170 -1.1097 4.7075 41 1 2.3508 -1.9207 5.5101 42 1 2.4311 -1.8614 3.7329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528546971.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:42 Heat of formation + Delta-G solvation = -143.309543 kcal Electronic energy + Delta-G solvation = -28728.666034 eV Core-core repulsion = 24507.717273 eV Total energy + Delta-G solvation = -4220.948761 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.14933 -47.13874 -38.54796 -37.15080 -36.51583 -35.42349 -32.82498 -32.54131 -31.72735 -30.08993 -27.63899 -25.93081 -24.98413 -24.34367 -22.66335 -21.07691 -20.79338 -18.55079 -17.60716 -17.46045 -17.21757 -16.72833 -16.45366 -16.23868 -16.19776 -15.32492 -14.90781 -14.57408 -14.00402 -13.82315 -13.69783 -13.49819 -13.28759 -13.25325 -12.98411 -12.93981 -12.79863 -12.52640 -12.39630 -12.30967 -12.22786 -11.96659 -11.72503 -11.59354 -11.44629 -11.26085 -11.19852 -10.88407 -10.67533 -10.36298 -10.17648 -10.08630 -9.66151 -9.46536 -9.21940 -8.66411 -8.16485 -6.15785 -4.16711 0.92164 3.13494 3.18983 3.30006 3.33310 3.55155 3.82716 3.84253 4.09080 4.16955 4.31099 4.46330 4.67927 4.74377 4.91675 5.07710 5.12032 5.22408 5.28214 5.32733 5.36474 5.42916 5.54430 5.61675 5.72386 5.78402 5.94859 6.05886 6.12071 6.18303 6.23980 6.42039 6.43262 6.52083 6.58699 6.76308 7.22946 7.33847 7.58097 8.43169 8.88406 9.43795 10.97243 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.004805 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.369958 B = 5826.097715 C = 6431.788001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.239 3.761 3 H 0.056 0.944 4 C -0.524 4.524 5 H 0.081 0.919 6 C 0.074 3.926 7 N -0.893 5.893 8 Si 0.882 3.118 9 H -0.277 1.277 10 H -0.264 1.264 11 H -0.293 1.293 12 N -0.982 5.982 13 C 0.101 3.899 14 S 2.775 3.225 15 O -0.979 6.979 16 O -0.972 6.972 17 N -1.012 6.012 18 C 0.121 3.879 19 C -0.170 4.170 20 C 0.291 3.709 21 F -0.204 7.204 22 F -0.198 7.198 23 C -0.166 4.166 24 C 0.155 3.845 25 H 0.083 0.917 26 C -0.181 4.181 27 H 0.033 0.967 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.266 0.734 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.478 3.766 18.854 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.135 3.865 3 H 0.074 0.926 4 C -0.563 4.563 5 H 0.099 0.901 6 C -0.129 4.129 7 N -0.531 5.531 8 Si 0.711 3.289 9 H -0.204 1.204 10 H -0.189 1.189 11 H -0.220 1.220 12 N -0.824 5.824 13 C -0.045 4.045 14 S 2.787 3.213 15 O -0.963 6.963 16 O -0.955 6.955 17 N -0.850 5.850 18 C -0.005 4.005 19 C -0.210 4.210 20 C 0.254 3.746 21 F -0.184 7.184 22 F -0.179 7.179 23 C -0.206 4.206 24 C 0.049 3.951 25 H 0.101 0.899 26 C -0.238 4.238 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.534 3.819 18.573 19.131 hybrid contribution -1.227 0.882 -0.091 1.514 sum -3.761 4.701 18.482 19.438 Atomic orbital electron populations 1.22488 0.99005 1.01509 0.99091 1.19096 0.90506 0.93575 0.83358 0.92608 1.21172 1.32612 1.14303 0.88234 0.90077 1.24908 0.95720 0.96544 0.95698 1.69869 1.45065 1.40173 0.97975 0.86958 0.80437 0.83889 0.77582 1.20385 1.18922 1.22032 1.57488 1.65878 1.23001 1.36006 1.21407 1.01647 0.82865 0.98558 1.02276 0.73945 0.73319 0.71797 1.93698 1.68486 1.58183 1.75888 1.93573 1.75415 1.55565 1.70986 1.58662 1.71728 1.23264 1.31335 1.21349 1.00006 0.80867 0.98291 1.22885 1.04677 1.00425 0.92998 1.21033 0.76689 0.92115 0.84721 1.93006 1.91512 1.77989 1.55940 1.92998 1.31904 1.96191 1.96839 1.23050 1.02922 0.93452 1.01139 1.21041 1.00588 0.91229 0.82260 0.89860 1.22936 1.02779 0.94591 1.03531 0.94809 0.93215 0.92086 0.92411 0.92679 0.92849 0.90469 0.87376 0.90319 0.88173 0.88289 0.88176 0.88472 0.88552 0.91948 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 8.57 37.16 0.32 -2.85 16 2 C 0.24 5.34 2.20 -69.08 -0.15 5.19 16 3 H 0.06 1.31 5.91 -51.93 -0.31 1.01 16 4 C -0.52 -14.17 9.03 -34.44 -0.31 -14.48 16 5 H 0.08 2.40 8.04 -52.49 -0.42 1.97 16 6 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 7 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 8 Si 0.88 20.99 24.38 -169.99 -4.14 16.84 16 9 H -0.28 -6.29 6.87 56.52 0.39 -5.90 16 10 H -0.26 -5.96 6.52 56.52 0.37 -5.59 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 N -0.98 -18.61 3.12 -115.85 -0.36 -18.97 16 13 C 0.10 1.62 9.57 59.85 0.57 2.20 16 14 S 2.78 49.09 5.80 -107.50 -0.62 48.46 16 15 O -0.98 -17.59 12.04 -57.17 -0.69 -18.28 16 16 O -0.97 -20.61 15.22 -57.17 -0.87 -21.48 16 17 N -1.01 -13.43 3.34 -106.24 -0.35 -13.79 16 18 C 0.12 1.44 6.27 -3.71 -0.02 1.41 16 19 C -0.17 -1.71 5.62 -26.61 -0.15 -1.86 16 20 C 0.29 3.06 2.10 -26.69 -0.06 3.00 16 21 F -0.20 -2.31 17.06 2.25 0.04 -2.27 16 22 F -0.20 -2.30 16.10 2.25 0.04 -2.26 16 23 C -0.17 -1.58 4.93 -26.39 -0.13 -1.71 16 24 C 0.16 1.70 3.33 -67.37 -0.22 1.47 16 25 H 0.08 0.83 7.92 -51.93 -0.41 0.42 16 26 C -0.18 -2.05 7.49 37.15 0.28 -1.78 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 1.03 3.29 -51.93 -0.17 0.86 16 29 H 0.06 1.13 6.49 -51.93 -0.34 0.80 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.68 5.25 -51.93 -0.27 0.41 16 33 H 0.08 1.20 6.18 -51.93 -0.32 0.88 16 34 H 0.11 1.39 6.93 -51.93 -0.36 1.03 16 35 H 0.08 0.85 7.92 -51.93 -0.41 0.44 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 1.23 6.50 -51.92 -0.34 0.90 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.09 1.09 3.12 -51.93 -0.16 0.93 16 LS Contribution 328.91 15.07 4.96 4.96 Total: -1.00 -32.07 328.91 -6.86 -38.93 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.65 Total: 1.11 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 0.03 Total: -7.41 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.06 Total: -58.59 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -1.56 Total: -39.77 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.07 Total: -4.53 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.14 Total: 16.84 kcal Atomic # 16 Polarization: 49.09 SS G_CDS: -0.62 Total: 48.46 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.07 -6.86 -38.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528546971.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.378 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds