Wall clock time and date at job start Sat Apr 11 2020 01:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46645 * 2 1 4 4 C 1.50700 * 109.47309 * 240.00532 * 2 1 3 5 5 H 1.07997 * 119.99918 * 239.99987 * 4 2 1 6 6 C 1.37877 * 120.00126 * 59.99521 * 4 2 1 7 7 N 1.31513 * 120.00274 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00103 * 0.27756 * 6 4 2 9 9 H 1.48494 * 109.47191 * 269.72622 * 8 6 4 10 10 H 1.48505 * 109.46852 * 29.72563 * 8 6 4 11 11 H 1.48500 * 109.47429 * 149.71985 * 8 6 4 12 12 N 1.46492 * 109.47089 * 119.99968 * 2 1 3 13 13 C 1.46502 * 119.99892 * 55.09971 * 12 2 1 14 14 S 1.65601 * 120.00307 * 235.09403 * 12 2 1 15 15 O 1.42104 * 106.40070 * 208.63014 * 14 12 2 16 16 O 1.42101 * 106.39764 * 341.54777 * 14 12 2 17 17 N 1.65595 * 107.22027 * 95.08768 * 14 12 2 18 18 C 1.46926 * 120.63110 * 270.63763 * 17 14 12 19 19 C 1.53196 * 108.77223 * 233.58249 * 18 17 14 20 20 C 1.53040 * 109.31390 * 305.36335 * 19 18 17 21 21 F 1.39895 * 109.45944 * 181.38882 * 20 19 18 22 22 F 1.39898 * 109.45803 * 301.36054 * 20 19 18 23 23 C 1.53039 * 109.53720 * 61.36617 * 20 19 18 24 24 C 1.46931 * 120.62962 * 90.34995 * 17 14 12 25 25 H 1.08999 * 109.58361 * 246.20550 * 24 17 14 26 26 C 1.52993 * 109.58562 * 6.62998 * 24 17 14 27 27 H 1.08994 * 109.47020 * 299.99571 * 1 2 3 28 28 H 1.08998 * 109.46990 * 59.99950 * 1 2 3 29 29 H 1.09000 * 109.47017 * 179.97438 * 1 2 3 30 30 H 0.96998 * 120.00613 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47809 * 95.53501 * 13 12 2 32 32 H 1.09006 * 109.46985 * 215.53721 * 13 12 2 33 33 H 1.09002 * 109.47111 * 335.52946 * 13 12 2 34 34 H 1.08994 * 109.58510 * 353.36761 * 18 17 14 35 35 H 1.08995 * 109.58686 * 113.79579 * 18 17 14 36 36 H 1.08997 * 109.49787 * 65.31825 * 19 18 17 37 37 H 1.08998 * 109.49686 * 185.37597 * 19 18 17 38 38 H 1.09001 * 109.49729 * 58.58577 * 23 20 19 39 39 H 1.09002 * 109.49697 * 178.68517 * 23 20 19 40 40 H 1.09011 * 109.47385 * 65.95050 * 26 24 17 41 41 H 1.09001 * 109.47219 * 185.94666 * 26 24 17 42 42 H 1.08994 * 109.47292 * 305.95186 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 2.1373 -0.8593 -3.5566 8 14 0.6316 1.2840 -2.6541 9 1 -0.7975 0.8838 -2.7034 10 1 0.8553 2.1787 -1.4901 11 1 0.9885 2.0006 -3.9049 12 7 2.0183 -0.6906 1.1961 13 6 1.5781 -2.0580 1.4835 14 16 3.0681 0.0744 2.2234 15 8 3.8501 -0.9452 2.8303 16 8 3.6316 1.1536 1.4906 17 7 2.1633 0.7525 3.4332 18 6 1.6321 2.1155 3.2967 19 6 2.0626 2.9369 4.5161 20 6 1.6231 2.2160 5.7926 21 9 1.9867 2.9790 6.9074 22 9 0.2346 2.0457 5.7772 23 6 2.3036 0.8473 5.8675 24 6 1.8712 0.0002 4.6611 25 1 0.8021 -0.2041 4.7188 26 6 2.6484 -1.3176 4.6522 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9027 -0.5282 -4.4376 31 1 2.3151 -2.7648 1.1022 32 1 1.4740 -2.1874 2.5608 33 1 0.6175 -2.2393 1.0013 34 1 2.0280 2.5728 2.3899 35 1 0.5440 2.0802 3.2455 36 1 3.1469 3.0477 4.5158 37 1 1.5963 3.9212 4.4747 38 1 3.3857 0.9778 5.8545 39 1 2.0084 0.3442 6.7883 40 1 3.7170 -1.1097 4.7075 41 1 2.3508 -1.9207 5.5101 42 1 2.4311 -1.8614 3.7329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528546971.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:41 Heat of formation + Delta-G solvation = -166.540623 kcal Electronic energy + Delta-G solvation = -28729.673409 eV Core-core repulsion = 24507.717273 eV Total energy + Delta-G solvation = -4221.956136 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.97021 -47.96593 -39.50834 -38.54832 -38.10759 -36.90286 -34.54998 -33.69277 -32.64082 -31.77603 -28.53229 -27.39709 -26.84071 -25.24852 -23.56314 -22.61482 -21.83157 -19.86011 -19.05964 -18.68628 -18.29942 -18.16180 -17.54465 -17.38027 -17.14845 -16.85121 -16.14937 -15.77690 -15.30580 -15.04533 -14.84799 -14.76939 -14.45949 -14.37915 -14.21625 -14.09270 -13.88307 -13.84260 -13.73348 -13.45105 -13.36501 -13.15387 -13.10956 -13.02202 -12.87792 -12.59291 -12.43770 -12.20614 -11.98084 -11.72544 -11.48861 -11.43120 -11.32434 -11.16323 -10.75167 -10.22637 -9.73243 -8.29699 -6.35086 -0.43980 1.30688 1.39397 1.47681 1.91765 2.32185 2.50116 2.75446 3.03728 3.05225 3.24293 3.31967 3.37705 3.71583 3.75299 3.98091 4.13891 4.24880 4.37471 4.44940 4.49037 4.55354 4.56052 4.60950 4.69517 4.74670 4.77176 4.83657 4.84897 4.96352 5.00654 5.08928 5.15039 5.23661 5.44169 5.56701 5.62665 5.63586 5.90462 6.33726 6.69420 7.29820 8.87234 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.004805 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.369958 B = 5826.097715 C = 6431.788001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.241 3.759 3 H 0.046 0.954 4 C -0.528 4.528 5 H 0.036 0.964 6 C 0.014 3.986 7 N -0.946 5.946 8 Si 0.940 3.060 9 H -0.253 1.253 10 H -0.243 1.243 11 H -0.300 1.300 12 N -0.992 5.992 13 C 0.096 3.904 14 S 2.785 3.215 15 O -0.988 6.988 16 O -1.013 7.013 17 N -1.001 6.001 18 C 0.114 3.886 19 C -0.169 4.169 20 C 0.290 3.710 21 F -0.208 7.208 22 F -0.203 7.203 23 C -0.164 4.164 24 C 0.153 3.847 25 H 0.103 0.897 26 C -0.182 4.182 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.267 0.733 31 H 0.034 0.966 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.647 4.979 21.624 22.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.136 3.864 3 H 0.064 0.936 4 C -0.567 4.567 5 H 0.054 0.946 6 C -0.184 4.184 7 N -0.586 5.586 8 Si 0.766 3.234 9 H -0.179 1.179 10 H -0.167 1.167 11 H -0.228 1.228 12 N -0.832 5.832 13 C -0.049 4.049 14 S 2.797 3.203 15 O -0.972 6.972 16 O -0.997 6.997 17 N -0.843 5.843 18 C -0.011 4.011 19 C -0.208 4.208 20 C 0.254 3.746 21 F -0.189 7.189 22 F -0.184 7.184 23 C -0.204 4.204 24 C 0.048 3.952 25 H 0.121 0.879 26 C -0.240 4.240 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.135 0.865 38 H 0.121 0.879 39 H 0.138 0.862 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.707 5.012 21.370 22.449 hybrid contribution -0.451 0.418 -0.832 1.034 sum -5.157 5.429 20.539 21.861 Atomic orbital electron populations 1.22360 0.96137 1.02525 1.00513 1.18844 0.92592 0.92469 0.82539 0.93643 1.21496 1.31505 1.13003 0.90715 0.94561 1.25814 0.97382 0.99965 0.95242 1.70037 1.47400 1.42510 0.98653 0.85996 0.79598 0.79971 0.77805 1.17870 1.16665 1.22808 1.57463 1.66016 1.24126 1.35602 1.21579 1.01076 0.81186 1.01076 1.01798 0.73914 0.72629 0.71911 1.93709 1.69225 1.58532 1.75730 1.93513 1.76645 1.56956 1.72567 1.58291 1.71329 1.23879 1.30771 1.21536 1.00897 0.79989 0.98720 1.22890 1.05062 1.00937 0.91953 1.21108 0.76445 0.92496 0.84546 1.93000 1.91546 1.78182 1.56185 1.92991 1.32325 1.96220 1.96846 1.23066 1.03098 0.92895 1.01304 1.21285 1.01626 0.90923 0.81403 0.87894 1.22879 1.01845 0.95181 1.04091 0.90820 0.94116 0.91441 0.92439 0.94763 0.88996 0.89931 0.88658 0.88581 0.87965 0.86484 0.87892 0.86174 0.90286 0.88759 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.69 8.57 71.98 0.62 -5.08 16 2 C 0.24 10.63 2.20 44.25 0.10 10.73 16 3 H 0.05 2.11 5.91 -2.39 -0.01 2.10 16 4 C -0.53 -29.41 9.03 25.60 0.23 -29.18 16 5 H 0.04 2.27 8.04 -2.91 -0.02 2.25 16 6 C 0.01 0.80 5.45 84.65 0.46 1.26 16 7 N -0.95 -58.54 13.96 21.45 0.30 -58.24 16 8 Si 0.94 42.90 24.38 68.60 1.67 44.57 16 9 H -0.25 -10.54 6.87 99.48 0.68 -9.86 16 10 H -0.24 -10.15 6.52 99.48 0.65 -9.50 16 11 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 12 N -0.99 -37.04 3.12 -520.44 -1.62 -38.66 16 13 C 0.10 3.01 9.57 127.77 1.22 4.23 16 14 S 2.79 96.96 5.80 -56.49 -0.33 96.63 16 15 O -0.99 -35.26 12.04 -128.00 -1.54 -36.80 16 16 O -1.01 -43.40 15.22 -128.00 -1.95 -45.34 16 17 N -1.00 -24.22 3.34 -490.02 -1.64 -25.85 16 18 C 0.11 2.40 6.27 86.36 0.54 2.94 16 19 C -0.17 -2.90 5.62 30.67 0.17 -2.73 16 20 C 0.29 5.12 2.10 30.62 0.06 5.19 16 21 F -0.21 -4.10 17.06 44.97 0.77 -3.33 16 22 F -0.20 -3.92 16.10 44.97 0.72 -3.20 16 23 C -0.16 -2.54 4.93 30.82 0.15 -2.39 16 24 C 0.15 2.82 3.33 45.12 0.15 2.97 16 25 H 0.10 1.58 7.92 -2.39 -0.02 1.56 16 26 C -0.18 -3.63 7.49 71.98 0.54 -3.09 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.04 1.55 3.29 -2.39 -0.01 1.55 16 29 H 0.07 2.34 6.49 -2.39 -0.02 2.32 16 30 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 2.15 5.25 -2.38 -0.01 2.13 16 33 H 0.08 2.48 6.18 -2.39 -0.01 2.46 16 34 H 0.10 2.30 6.93 -2.39 -0.02 2.28 16 35 H 0.10 1.71 7.92 -2.39 -0.02 1.69 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.88 6.50 -2.38 -0.02 1.87 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.07 1.62 3.12 -2.39 -0.01 1.62 16 Total: -1.00 -72.39 328.91 1.60 -70.78 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.97 Total: 14.59 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 4.25 Total: -15.15 kcal Atomic # 7 Polarization: -119.79 SS G_CDS: -2.96 Total: -122.75 kcal Atomic # 8 Polarization: -78.66 SS G_CDS: -3.49 Total: -82.15 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 1.49 Total: -6.53 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.67 Total: 44.57 kcal Atomic # 16 Polarization: 96.96 SS G_CDS: -0.33 Total: 96.63 kcal Total: -72.39 1.60 -70.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528546971.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.757 kcal (2) G-P(sol) polarization free energy of solvation -72.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds