Wall clock time and date at job start Sat Apr 11 2020 01:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47214 * 2 1 4 4 O 1.42890 * 109.47410 * 120.00675 * 2 1 3 5 5 C 1.35573 * 117.00267 * 154.90067 * 4 2 1 6 6 C 1.39156 * 119.88713 * 5.39239 * 5 4 2 7 7 C 1.36401 * 120.44769 * 179.74342 * 6 5 4 8 8 C 1.40933 * 120.20848 * 0.23644 * 7 6 5 9 9 C 1.41249 * 120.11034 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00200 * 331.63864 * 9 8 7 11 11 C 1.39869 * 119.99843 * 151.64656 * 9 8 7 12 12 N 1.30886 * 119.99862 * 346.83501 * 11 9 8 13 13 Si 1.86803 * 119.99784 * 166.83571 * 11 9 8 14 14 H 1.48502 * 109.47048 * 59.99938 * 13 11 9 15 15 H 1.48506 * 109.46719 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47509 * 299.99715 * 13 11 9 17 17 C 1.40578 * 119.77278 * 0.02562 * 8 7 6 18 18 C 1.38708 * 119.56135 * 0.02562 * 17 8 7 19 19 C 1.48188 * 120.10318 * 180.02562 * 18 17 8 20 20 C 1.39566 * 119.97006 * 129.72600 * 19 18 17 21 21 C 1.37614 * 120.02073 * 179.71629 * 20 19 18 22 22 C 1.39789 * 119.97607 * 0.53075 * 21 20 19 23 23 C 1.47550 * 120.02829 * 179.71904 * 22 21 20 24 24 O 1.21498 * 120.00057 * 180.02562 * 23 22 21 25 25 O 1.34743 * 120.00222 * 0.02562 * 23 22 21 26 26 C 1.39790 * 119.94400 * 359.74163 * 22 21 20 27 27 C 1.37615 * 119.97249 * 0.02562 * 26 22 21 28 28 H 1.09006 * 109.46841 * 299.99410 * 1 2 3 29 29 H 1.08999 * 109.47236 * 59.99081 * 1 2 3 30 30 H 1.08993 * 109.47385 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46841 * 240.00590 * 2 1 3 32 32 H 1.08998 * 109.46865 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47252 * 300.00579 * 3 2 1 34 34 H 1.09006 * 109.46734 * 60.00524 * 3 2 1 35 35 H 1.08000 * 119.77668 * 0.02562 * 6 5 4 36 36 H 1.08001 * 119.89679 * 180.25615 * 7 6 5 37 37 H 0.97002 * 120.00178 * 180.02562 * 12 11 9 38 38 H 1.07999 * 120.21652 * 180.02562 * 17 8 7 39 39 H 1.07990 * 119.98911 * 359.97438 * 20 19 18 40 40 H 1.08003 * 120.01164 * 180.26724 * 21 20 19 41 41 H 0.96701 * 116.99926 * 179.97438 * 25 23 22 42 42 H 1.08004 * 120.01151 * 179.97438 * 26 22 21 43 43 H 1.08002 * 119.98352 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 3.2429 -1.2253 1.0971 6 6 4.0295 -1.0238 -0.0330 7 6 5.2772 -1.5691 -0.1128 8 6 5.7803 -2.3473 0.9490 9 6 7.0729 -2.9105 0.8644 10 1 7.4930 -3.1558 -0.0999 11 6 7.8087 -3.1506 2.0294 12 7 7.4240 -2.6276 3.1658 13 14 9.3405 -4.2177 1.9632 14 1 10.3272 -3.6103 1.0344 15 1 9.9344 -4.3158 3.3208 16 1 8.9779 -5.5750 1.4818 17 6 4.9912 -2.5612 2.0926 18 6 3.7233 -2.0031 2.1633 19 6 2.8814 -2.2204 3.3633 20 6 2.2817 -1.1330 4.0004 21 6 1.4950 -1.3342 5.1114 22 6 1.3057 -2.6269 5.6085 23 6 0.4675 -2.8432 6.8033 24 8 0.3037 -3.9670 7.2352 25 8 -0.1164 -1.7945 7.4156 26 6 1.9117 -3.7145 4.9728 27 6 2.6940 -3.5114 3.8591 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 3.6512 -0.4280 -0.8505 36 1 5.8817 -1.4036 -0.9924 37 1 7.9345 -2.7938 3.9737 38 1 5.3697 -3.1560 2.9107 39 1 2.4316 -0.1340 3.6188 40 1 1.0274 -0.4931 5.6017 41 1 -0.6566 -1.9860 8.1945 42 1 1.7665 -4.7138 5.3562 43 1 3.1619 -4.3516 3.3676 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567978819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:53 Heat of formation + Delta-G solvation = -110.690599 kcal Electronic energy + Delta-G solvation = -26998.378778 eV Core-core repulsion = 23165.337308 eV Total energy + Delta-G solvation = -3833.041470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43883 -40.86473 -39.47287 -38.25715 -37.07147 -35.38219 -33.99853 -33.32371 -32.00758 -30.90827 -30.14632 -28.09307 -26.78980 -25.63152 -24.16433 -23.18947 -22.71245 -21.67846 -21.25160 -19.27483 -19.04293 -18.69872 -18.36255 -17.15592 -16.67803 -16.62464 -16.26800 -16.17053 -15.73701 -15.42239 -15.14455 -15.11517 -14.59410 -14.42309 -14.21000 -14.11536 -13.64283 -13.54776 -13.38585 -13.17072 -13.09155 -12.99183 -12.76514 -12.70188 -12.57922 -12.42559 -12.30956 -11.99866 -11.83265 -11.74756 -11.61574 -11.42416 -11.10575 -10.87776 -10.19042 -9.97665 -9.19725 -8.76251 -8.52488 -6.22718 -0.41339 0.44290 0.87318 1.02250 1.40348 1.49091 1.51377 1.62087 2.08492 2.23994 2.64621 2.70538 2.88610 3.64637 3.79501 3.90474 3.98935 4.01164 4.12897 4.18692 4.25637 4.37965 4.44090 4.53885 4.56331 4.76872 4.80661 4.90135 4.92224 4.96981 5.03822 5.08136 5.18996 5.23626 5.27833 5.32302 5.35996 5.37144 5.50065 5.56728 5.60761 5.70767 5.82414 5.93328 6.06721 6.26769 6.58471 6.83557 6.98211 6.98962 7.09848 8.41968 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.008418 B = 0.004665 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.593189 B = 6000.191760 C = 8856.555789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.067 3.933 3 C -0.172 4.172 4 O -0.320 6.320 5 C 0.039 3.961 6 C -0.173 4.173 7 C -0.189 4.189 8 C 0.052 3.948 9 C -0.501 4.501 10 H 0.074 0.926 11 C 0.036 3.964 12 N -0.838 5.838 13 Si 0.975 3.025 14 H -0.261 1.261 15 H -0.272 1.272 16 H -0.262 1.262 17 C -0.122 4.122 18 C -0.092 4.092 19 C 0.020 3.980 20 C -0.118 4.118 21 C -0.048 4.048 22 C -0.158 4.158 23 C 0.542 3.458 24 O -0.550 6.550 25 O -0.501 6.501 26 C -0.053 4.053 27 C -0.137 4.137 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.284 0.716 38 H 0.111 0.889 39 H 0.130 0.870 40 H 0.161 0.839 41 H 0.433 0.567 42 H 0.142 0.858 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.717 5.173 1.399 13.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.011 3.989 3 C -0.229 4.229 4 O -0.236 6.236 5 C -0.006 4.006 6 C -0.192 4.192 7 C -0.208 4.208 8 C 0.050 3.950 9 C -0.532 4.532 10 H 0.092 0.908 11 C -0.177 4.177 12 N -0.465 5.465 13 Si 0.797 3.203 14 H -0.185 1.185 15 H -0.197 1.197 16 H -0.186 1.186 17 C -0.142 4.142 18 C -0.093 4.093 19 C 0.020 3.980 20 C -0.136 4.136 21 C -0.066 4.066 22 C -0.159 4.159 23 C 0.388 3.612 24 O -0.443 6.443 25 O -0.314 6.314 26 C -0.071 4.071 27 C -0.155 4.155 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.149 0.851 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.148 0.852 40 H 0.179 0.821 41 H 0.295 0.705 42 H 0.160 0.840 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.608 5.010 1.582 13.659 hybrid contribution 0.953 -0.628 0.195 1.158 sum -11.655 4.382 1.777 12.578 Atomic orbital electron populations 1.21815 0.91299 1.02717 1.03776 1.22541 0.96133 0.92798 0.87432 1.22318 1.01183 0.95813 1.03604 1.85928 1.29421 1.69248 1.38972 1.18577 0.86235 1.00350 0.95415 1.20678 0.95643 1.04850 0.98010 1.20920 0.96922 1.02330 1.00648 1.17813 0.93556 0.91680 0.91983 1.19629 1.00342 1.39017 0.94176 0.90752 1.26583 1.01980 0.94913 0.94218 1.69855 1.39645 1.36152 1.00891 0.85345 0.77425 0.79155 0.78360 1.18545 1.19678 1.18611 1.21231 0.91391 1.01676 0.99868 1.18187 0.95038 1.02494 0.93583 1.19234 0.92566 0.93746 0.92440 1.21222 0.97791 0.98730 0.95817 1.21486 0.94781 0.96284 0.94017 1.19108 1.04358 0.95320 0.97130 1.20688 0.76459 0.81748 0.82299 1.90860 1.61398 1.26079 1.65963 1.84528 1.62396 1.38064 1.46459 1.21167 0.93611 0.98995 0.93346 1.21222 1.00214 0.96671 0.97395 0.91590 0.88468 0.92708 0.91873 0.93660 0.89118 0.91702 0.85141 0.87702 0.90540 0.87086 0.85237 0.82110 0.70465 0.84050 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.56 71.98 0.69 -2.17 16 2 C 0.07 1.81 2.84 30.60 0.09 1.90 16 3 C -0.17 -4.06 9.17 71.98 0.66 -3.40 16 4 O -0.32 -11.41 8.10 -88.81 -0.72 -12.13 16 5 C 0.04 1.63 6.54 23.03 0.15 1.78 16 6 C -0.17 -7.17 8.16 22.06 0.18 -6.99 16 7 C -0.19 -8.84 9.72 22.50 0.22 -8.62 16 8 C 0.05 2.71 5.54 -21.31 -0.12 2.59 16 9 C -0.50 -26.57 9.04 23.41 0.21 -26.36 16 10 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 11 C 0.04 1.81 5.20 85.23 0.44 2.25 16 12 N -0.84 -44.02 10.94 21.81 0.24 -43.78 16 13 Si 0.98 38.55 29.58 68.60 2.03 40.57 16 14 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 15 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 16 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 17 C -0.12 -6.25 8.10 22.95 0.19 -6.06 16 18 C -0.09 -4.19 5.48 -19.98 -0.11 -4.30 16 19 C 0.02 0.81 5.28 -19.99 -0.11 0.70 16 20 C -0.12 -4.03 8.75 22.44 0.20 -3.84 16 21 C -0.05 -1.37 9.60 22.50 0.22 -1.15 16 22 C -0.16 -4.72 5.88 -20.07 -0.12 -4.84 16 23 C 0.54 14.46 8.27 70.28 0.58 15.04 16 24 O -0.55 -17.48 17.12 19.84 0.34 -17.14 16 25 O -0.50 -9.14 12.67 -56.54 -0.72 -9.86 16 26 C -0.05 -1.72 9.58 22.50 0.22 -1.50 16 27 C -0.14 -5.04 9.48 22.44 0.21 -4.83 16 28 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.74 6.28 -2.38 -0.01 1.72 16 32 H 0.04 1.25 6.92 -2.39 -0.02 1.24 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.13 4.52 5.39 -2.91 -0.02 4.51 16 36 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 37 H 0.28 13.76 8.30 -92.71 -0.77 13.00 16 38 H 0.11 6.02 6.24 -2.91 -0.02 6.01 16 39 H 0.13 4.38 7.66 -2.92 -0.02 4.36 16 40 H 0.16 3.58 7.60 -2.91 -0.02 3.56 16 41 H 0.43 3.51 9.11 -74.06 -0.67 2.84 16 42 H 0.14 4.22 7.64 -2.91 -0.02 4.20 16 43 H 0.13 4.64 8.03 -2.91 -0.02 4.62 16 Total: -1.00 -64.47 365.71 5.35 -59.12 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: 0.38 Total: 33.01 kcal Atomic # 6 Polarization: -53.60 SS G_CDS: 3.80 Total: -49.81 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.24 Total: -43.78 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -1.10 Total: -39.12 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.57 kcal Total: -64.47 5.35 -59.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567978819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.567 kcal (2) G-P(sol) polarization free energy of solvation -64.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds