Wall clock time and date at job start Sat Apr 11 2020 01:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46798 * 2 1 4 4 C 1.52999 * 109.47347 * 120.00529 * 2 1 3 5 5 O 1.42897 * 109.46905 * 294.99781 * 4 2 1 6 6 C 1.53004 * 109.46697 * 240.00610 * 2 1 3 7 7 S 1.81400 * 109.47306 * 64.99644 * 6 2 1 8 8 C 1.81402 * 102.99858 * 179.97438 * 7 6 2 9 9 C 1.52996 * 109.46819 * 180.02562 * 8 7 6 10 10 H 1.08994 * 109.47475 * 59.99833 * 9 8 7 11 11 O 1.42903 * 109.47263 * 299.99845 * 9 8 7 12 12 C 1.53005 * 109.47005 * 180.02562 * 9 8 7 13 13 O 1.42900 * 109.47305 * 184.99842 * 12 9 8 14 14 C 1.35670 * 117.00043 * 179.97438 * 13 12 9 15 15 C 1.39311 * 119.81933 * 359.73179 * 14 13 12 16 16 C 1.36436 * 120.18332 * 179.75932 * 15 14 13 17 17 C 1.40827 * 119.81574 * 0.50703 * 16 15 14 18 18 C 1.41217 * 120.18168 * 179.72011 * 17 16 15 19 19 H 1.07995 * 120.00192 * 24.57030 * 18 17 16 20 20 C 1.39892 * 120.00112 * 204.57112 * 18 17 16 21 21 N 1.30881 * 119.99857 * 17.93427 * 20 18 17 22 22 Si 1.86790 * 120.00190 * 197.93592 * 20 18 17 23 23 H 1.48499 * 109.47252 * 89.99878 * 22 20 18 24 24 H 1.48509 * 109.47257 * 210.00068 * 22 20 18 25 25 H 1.48508 * 109.47178 * 329.99874 * 22 20 18 26 26 C 1.40833 * 119.63815 * 359.74430 * 17 16 15 27 27 C 1.36435 * 119.81388 * 359.97438 * 26 17 16 28 28 H 1.09008 * 109.46782 * 299.99478 * 1 2 3 29 29 H 1.08996 * 109.47577 * 59.99284 * 1 2 3 30 30 H 1.09002 * 109.47408 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47198 * 54.99585 * 4 2 1 32 32 H 1.08994 * 109.46904 * 174.99818 * 4 2 1 33 33 H 0.96701 * 113.99958 * 179.97438 * 5 4 2 34 34 H 1.08997 * 109.46808 * 185.00273 * 6 2 1 35 35 H 1.09000 * 109.47058 * 304.99857 * 6 2 1 36 36 H 1.09003 * 109.47213 * 300.00078 * 8 7 6 37 37 H 1.08994 * 109.47233 * 60.00010 * 8 7 6 38 38 H 0.96697 * 113.99777 * 300.00429 * 11 9 8 39 39 H 1.08996 * 109.46840 * 305.00194 * 12 9 8 40 40 H 1.08997 * 109.47206 * 64.99944 * 12 9 8 41 41 H 1.07999 * 119.90887 * 0.02562 * 15 14 13 42 42 H 1.08003 * 120.08975 * 180.24941 * 16 15 14 43 43 H 0.96997 * 120.00369 * 180.02562 * 21 20 18 44 44 H 1.08006 * 120.09478 * 179.97438 * 26 17 16 45 45 H 1.08007 * 119.90989 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 8 1.6621 0.0166 2.4130 6 6 2.0400 -0.7212 -1.2494 7 16 1.5599 0.2158 -2.7267 8 6 2.2428 -0.7795 -4.0808 9 6 1.9182 -0.1116 -5.4185 10 1 2.3578 0.8854 -5.4429 11 8 0.5007 -0.0110 -5.5691 12 6 2.4936 -0.9514 -6.5607 13 8 2.2927 -0.2703 -7.8008 14 6 2.7488 -0.8840 -8.9215 15 6 3.3846 -2.1198 -8.8247 16 6 3.8418 -2.7458 -9.9474 17 6 3.6791 -2.1343 -11.2055 18 6 4.1547 -2.7726 -12.3720 19 1 4.2738 -3.8458 -12.3899 20 6 4.4716 -2.0147 -13.5044 21 7 4.6693 -0.7256 -13.3947 22 14 4.6125 -2.8426 -15.1728 23 1 3.2876 -2.8336 -15.8434 24 1 5.5954 -2.1074 -16.0088 25 1 5.0668 -4.2450 -14.9929 26 6 3.0400 -0.8824 -11.2940 27 6 2.5834 -0.2725 -10.1623 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6054 -1.7199 1.2950 32 1 3.1264 -0.7995 1.2054 33 1 1.9527 -0.3835 3.2440 34 1 3.1262 -0.7994 -1.2057 35 1 1.6053 -1.7197 -1.2953 36 1 3.3241 -0.8559 -3.9662 37 1 1.8035 -1.7767 -4.0561 38 1 0.0425 -0.8624 -5.5567 39 1 3.5607 -1.1031 -6.3982 40 1 1.9898 -1.9175 -6.5910 41 1 3.5120 -2.5856 -7.8587 42 1 4.3309 -3.7057 -9.8711 43 1 4.8886 -0.2000 -14.1798 44 1 2.9117 -0.4066 -12.2551 45 1 2.0934 0.6878 -10.2283 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571008870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:37:56 Heat of formation + Delta-G solvation = -156.875731 kcal Electronic energy + Delta-G solvation = -23905.826808 eV Core-core repulsion = 20206.226551 eV Total energy + Delta-G solvation = -3699.600256 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.138 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.65611 -38.88538 -38.54340 -37.59417 -35.42048 -35.18650 -32.71271 -31.60798 -30.91361 -28.57372 -27.83601 -26.97954 -26.41654 -23.60388 -22.52838 -22.26418 -21.28222 -19.26451 -18.87620 -18.39891 -17.77989 -17.47904 -17.07238 -16.92115 -16.39570 -16.10019 -15.81904 -15.73234 -15.58109 -15.18863 -14.87917 -14.62634 -14.20198 -14.08096 -13.93893 -13.74469 -13.51617 -13.28821 -13.13480 -13.05484 -12.80880 -12.61124 -12.38594 -12.30565 -12.18292 -12.10275 -11.74692 -11.67993 -11.59384 -11.28562 -11.04525 -10.89220 -10.88464 -10.79490 -9.56634 -8.93392 -8.61591 -8.59785 -6.23222 0.53708 0.94453 1.02340 1.39958 1.52808 1.53041 1.62349 2.22700 2.51111 2.72460 3.29899 3.40793 3.69730 3.76742 3.77473 3.86057 3.92587 3.96833 4.17528 4.19489 4.27818 4.34954 4.37382 4.43496 4.50409 4.54060 4.56690 4.68881 4.84342 4.85324 4.91871 5.02496 5.06522 5.21327 5.23129 5.27999 5.36132 5.58316 5.63916 5.87617 6.05572 6.25869 6.56004 6.75601 6.81528 6.90581 6.94830 7.09620 8.36753 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.046677 B = 0.001654 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.723296 B =16928.117316 C =17233.760101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 H 0.068 0.932 4 C 0.086 3.914 5 O -0.594 6.594 6 C -0.078 4.078 7 S -0.264 6.264 8 C -0.111 4.111 9 C 0.137 3.863 10 H 0.096 0.904 11 O -0.560 6.560 12 C 0.035 3.965 13 O -0.332 6.332 14 C 0.000 4.000 15 C -0.164 4.164 16 C -0.207 4.207 17 C 0.054 3.946 18 C -0.499 4.499 19 H 0.077 0.923 20 C 0.033 3.967 21 N -0.832 5.832 22 Si 0.982 3.018 23 H -0.264 1.264 24 H -0.270 1.270 25 H -0.257 1.257 26 C -0.153 4.153 27 C -0.135 4.135 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.399 0.601 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.387 0.613 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.132 0.868 42 H 0.107 0.893 43 H 0.287 0.713 44 H 0.109 0.891 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.600 -3.463 25.510 25.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.096 4.096 3 H 0.086 0.914 4 C 0.007 3.993 5 O -0.402 6.402 6 C -0.226 4.226 7 S -0.036 6.036 8 C -0.259 4.259 9 C 0.076 3.924 10 H 0.114 0.886 11 O -0.367 6.367 12 C -0.042 4.042 13 O -0.248 6.248 14 C -0.044 4.044 15 C -0.182 4.182 16 C -0.226 4.226 17 C 0.052 3.948 18 C -0.529 4.529 19 H 0.095 0.905 20 C -0.181 4.181 21 N -0.459 5.459 22 Si 0.803 3.197 23 H -0.188 1.188 24 H -0.194 1.194 25 H -0.181 1.181 26 C -0.172 4.172 27 C -0.154 4.154 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.249 0.751 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.236 0.764 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.150 0.850 42 H 0.125 0.875 43 H 0.098 0.902 44 H 0.127 0.873 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.311 -1.113 24.870 25.266 hybrid contribution 1.174 -2.231 -0.453 2.561 sum -3.138 -3.344 24.417 24.844 Atomic orbital electron populations 1.21777 0.94190 1.02344 1.01592 1.20815 0.97112 0.99840 0.91841 0.91382 1.22172 0.98722 0.94103 0.84306 1.86424 1.82012 1.54240 1.17555 1.23387 1.04502 1.01476 0.93237 1.87477 1.75925 1.38928 1.01266 1.23985 1.05502 1.02061 0.94396 1.21425 0.82050 0.99664 0.89268 0.88571 1.86652 1.17966 1.36299 1.95777 1.23462 1.01592 0.96298 0.82887 1.85875 1.78076 1.47339 1.13464 1.18675 1.05249 0.94518 0.85936 1.20705 1.03228 0.95365 0.98941 1.20806 1.07771 1.01883 0.92179 1.17968 0.90960 0.92643 0.93266 1.19725 1.40730 0.95234 0.97200 0.90485 1.26742 0.91641 0.95179 1.04513 1.69891 1.34416 1.08535 1.33014 0.85199 0.79011 0.79312 0.76145 1.18838 1.19434 1.18098 1.20894 1.01485 0.98043 0.96805 1.20011 1.04359 1.00084 0.90908 0.92691 0.92811 0.91824 0.91970 0.92236 0.75138 0.88689 0.88428 0.87380 0.87459 0.76405 0.90960 0.90964 0.85032 0.87480 0.90227 0.87345 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.92 71.98 0.64 -1.50 16 2 C -0.08 -1.03 2.62 -10.79 -0.03 -1.06 16 3 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 4 C 0.09 0.82 6.43 71.98 0.46 1.28 16 5 O -0.59 -7.04 13.19 -148.98 -1.97 -9.01 16 6 C -0.08 -0.93 5.38 71.98 0.39 -0.54 16 7 S -0.26 -4.92 20.19 -56.49 -1.14 -6.06 16 8 C -0.11 -1.76 5.64 71.98 0.41 -1.35 16 9 C 0.14 3.15 3.30 30.59 0.10 3.25 16 10 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 11 O -0.56 -14.37 12.90 -144.32 -1.86 -16.23 16 12 C 0.04 0.94 4.36 71.98 0.31 1.26 16 13 O -0.33 -13.00 10.09 -85.21 -0.86 -13.86 16 14 C 0.00 0.00 6.71 22.79 0.15 0.16 16 15 C -0.16 -6.99 8.96 22.11 0.20 -6.79 16 16 C -0.21 -9.97 9.74 22.48 0.22 -9.75 16 17 C 0.05 2.92 5.57 -21.28 -0.12 2.81 16 18 C -0.50 -26.97 9.04 23.40 0.21 -26.76 16 19 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 20 C 0.03 1.68 5.13 85.24 0.44 2.12 16 21 N -0.83 -44.16 10.96 21.82 0.24 -43.92 16 22 Si 0.98 38.40 29.59 68.60 2.03 40.43 16 23 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 24 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 25 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 26 C -0.15 -8.26 8.64 22.48 0.19 -8.07 16 27 C -0.13 -6.69 9.92 22.11 0.22 -6.47 16 28 H 0.05 0.91 7.82 -2.38 -0.02 0.89 16 29 H 0.05 0.96 7.13 -2.39 -0.02 0.95 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.40 1.03 9.12 -74.06 -0.68 0.35 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.39 7.03 9.04 -74.06 -0.67 6.36 16 39 H 0.07 1.78 7.63 -2.39 -0.02 1.77 16 40 H 0.07 1.71 7.66 -2.39 -0.02 1.69 16 41 H 0.13 4.47 6.27 -2.91 -0.02 4.45 16 42 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 43 H 0.29 13.80 8.30 -92.71 -0.77 13.04 16 44 H 0.11 6.11 6.16 -2.91 -0.02 6.09 16 45 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -68.80 385.06 -0.11 -68.90 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: -0.35 Total: 31.16 kcal Atomic # 6 Polarization: -55.21 SS G_CDS: 3.80 Total: -51.41 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.24 Total: -43.92 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -4.69 Total: -39.09 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -1.14 Total: -6.06 kcal Total: -68.80 -0.11 -68.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571008870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.972 kcal (2) G-P(sol) polarization free energy of solvation -68.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds