Wall clock time and date at job start Sat Apr 11 2020 01:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47144 * 2 1 4 4 O 1.42897 * 109.47493 * 239.99551 * 2 1 3 5 5 C 1.53006 * 109.46854 * 119.99357 * 2 1 3 6 6 H 1.09000 * 109.47165 * 300.00108 * 5 2 1 7 7 C 1.53003 * 109.46854 * 180.02562 * 5 2 1 8 8 S 1.81397 * 109.46702 * 60.00147 * 5 2 1 9 9 C 1.81403 * 102.99556 * 184.99981 * 8 5 2 10 10 C 1.52998 * 109.47087 * 180.02562 * 9 8 5 11 11 H 1.08999 * 109.47157 * 305.00138 * 10 9 8 12 12 O 1.42899 * 109.47333 * 65.00120 * 10 9 8 13 13 C 1.53008 * 109.47301 * 184.99706 * 10 9 8 14 14 O 1.42895 * 109.47201 * 174.99772 * 13 10 9 15 15 C 1.35672 * 117.00132 * 180.02562 * 14 13 10 16 16 C 1.39314 * 119.81566 * 359.72633 * 15 14 13 17 17 C 1.36445 * 120.18386 * 179.75685 * 16 15 14 18 18 C 1.40834 * 119.80728 * 0.51806 * 17 16 15 19 19 C 1.41212 * 120.17277 * 179.71810 * 18 17 16 20 20 H 1.07999 * 120.00517 * 24.56634 * 19 18 17 21 21 C 1.39897 * 119.99694 * 204.56221 * 19 18 17 22 22 N 1.30877 * 120.00025 * 17.95064 * 21 19 18 23 23 Si 1.86799 * 119.99973 * 197.94386 * 21 19 18 24 24 H 1.48501 * 109.47222 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47377 * 120.00069 * 23 21 19 26 26 H 1.48500 * 109.47156 * 240.00517 * 23 21 19 27 27 C 1.40827 * 119.64713 * 359.73800 * 18 17 16 28 28 C 1.36441 * 119.80745 * 0.02562 * 27 18 17 29 29 H 1.09000 * 109.47322 * 300.00632 * 1 2 3 30 30 H 1.09004 * 109.46489 * 60.00409 * 1 2 3 31 31 H 1.09000 * 109.47322 * 180.02562 * 1 2 3 32 32 H 0.96701 * 114.00099 * 300.00147 * 4 2 1 33 33 H 1.09000 * 109.47322 * 300.00011 * 7 5 2 34 34 H 1.09000 * 109.46660 * 60.00528 * 7 5 2 35 35 H 1.08996 * 109.46688 * 179.97438 * 7 5 2 36 36 H 1.09008 * 109.47292 * 300.00014 * 9 8 5 37 37 H 1.08998 * 109.47415 * 59.99921 * 9 8 5 38 38 H 0.96700 * 114.00505 * 60.00032 * 12 10 9 39 39 H 1.08998 * 109.47125 * 295.00373 * 13 10 9 40 40 H 1.08998 * 109.46580 * 54.99736 * 13 10 9 41 41 H 1.07999 * 119.90672 * 0.02773 * 16 15 14 42 42 H 1.07993 * 120.09185 * 180.25458 * 17 16 15 43 43 H 0.96999 * 119.99712 * 180.02562 * 22 21 19 44 44 H 1.07994 * 120.09855 * 179.97438 * 27 18 17 45 45 H 1.08001 * 119.90252 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2494 6 1 1.6766 -0.2072 2.1393 7 6 3.5700 -0.7206 1.2497 8 16 1.4353 -2.4314 1.2494 9 6 2.0034 -3.0649 2.8515 10 6 1.5659 -4.5227 3.0076 11 1 0.4871 -4.5950 2.8694 12 8 2.2266 -5.3259 2.0276 13 6 1.9354 -5.0190 4.4070 14 8 1.4243 -6.3402 4.5941 15 6 1.6660 -6.9303 5.7917 16 6 2.3892 -6.2473 6.7670 17 6 2.6323 -6.8316 7.9758 18 6 2.1593 -8.1332 8.2320 19 6 2.4116 -8.7476 9.4782 20 1 2.5958 -8.1405 10.3522 21 6 2.4230 -10.1427 9.5805 22 7 2.5529 -10.8768 8.5048 23 14 2.2528 -10.9579 11.2526 24 1 2.1203 -9.9144 12.3009 25 1 1.0460 -11.8232 11.2610 26 1 3.4562 -11.7841 11.5253 27 6 1.4336 -8.8187 7.2387 28 6 1.1950 -8.2182 6.0370 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.7211 -1.5953 -1.2328 33 1 3.9338 -1.2342 0.3598 34 1 3.9329 0.3072 1.2499 35 1 3.9333 -1.2339 2.1400 36 1 3.0907 -3.0050 2.9010 37 1 1.5697 -2.4672 3.6531 38 1 3.1914 -5.3093 2.0908 39 1 3.0200 -5.0304 4.5138 40 1 1.5037 -4.3532 5.1543 41 1 2.7547 -5.2508 6.5673 42 1 3.1896 -6.2992 8.7322 43 1 2.5604 -11.8442 8.5759 44 1 1.0678 -9.8172 7.4272 45 1 0.6390 -8.7427 5.2740 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594890828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:12 Heat of formation + Delta-G solvation = -152.787206 kcal Electronic energy + Delta-G solvation = -24444.146077 eV Core-core repulsion = 20744.723113 eV Total energy + Delta-G solvation = -3699.422965 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.138 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66514 -38.99526 -38.85104 -37.60473 -35.19308 -34.01781 -32.70924 -31.62644 -30.97006 -30.82032 -28.02758 -26.44578 -24.82196 -23.69637 -22.66546 -22.45496 -22.15483 -19.27225 -18.90248 -18.04414 -17.53805 -17.49498 -17.25638 -17.02851 -16.19705 -16.09622 -15.75193 -15.71273 -15.57361 -15.18527 -14.72560 -14.55652 -14.12214 -14.08937 -13.96399 -13.60852 -13.54219 -13.21662 -13.00978 -12.83154 -12.79166 -12.76038 -12.66805 -12.59815 -12.39288 -12.04197 -11.82091 -11.73496 -11.59165 -11.32738 -11.12742 -10.98954 -10.88653 -10.70238 -9.57217 -8.93886 -8.63145 -8.60466 -6.23584 0.51032 0.93619 1.01617 1.39711 1.50476 1.51748 1.54912 2.22311 2.49671 2.71848 3.34606 3.38265 3.64685 3.69131 3.77304 3.85411 3.88614 3.89862 4.16490 4.17440 4.27196 4.33976 4.36199 4.40326 4.42405 4.50096 4.71172 4.82922 4.85514 4.88997 4.91602 5.04192 5.05996 5.20826 5.25739 5.27572 5.29757 5.57660 5.63394 5.87035 6.05164 6.25332 6.55404 6.65087 6.72994 6.80518 6.94354 7.08917 8.36206 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.041838 B = 0.001847 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.093641 B =15156.176259 C =15370.035770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.123 3.877 3 H 0.120 0.880 4 O -0.572 6.572 5 C -0.093 4.093 6 H 0.105 0.895 7 C -0.142 4.142 8 S -0.252 6.252 9 C -0.109 4.109 10 C 0.138 3.862 11 H 0.100 0.900 12 O -0.560 6.560 13 C 0.035 3.965 14 O -0.331 6.331 15 C 0.001 3.999 16 C -0.164 4.164 17 C -0.208 4.208 18 C 0.054 3.946 19 C -0.498 4.498 20 H 0.077 0.923 21 C 0.032 3.968 22 N -0.831 5.831 23 Si 0.982 3.018 24 H -0.257 1.257 25 H -0.266 1.266 26 H -0.267 1.267 27 C -0.153 4.153 28 C -0.135 4.135 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.382 0.618 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.386 0.614 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.131 0.869 42 H 0.107 0.893 43 H 0.287 0.713 44 H 0.109 0.891 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.294 20.050 -12.392 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.063 3.937 3 H 0.138 0.862 4 O -0.379 6.379 5 C -0.222 4.222 6 H 0.124 0.876 7 C -0.201 4.201 8 S -0.025 6.025 9 C -0.258 4.258 10 C 0.077 3.923 11 H 0.118 0.882 12 O -0.367 6.367 13 C -0.043 4.043 14 O -0.247 6.247 15 C -0.043 4.043 16 C -0.182 4.182 17 C -0.227 4.227 18 C 0.052 3.948 19 C -0.528 4.528 20 H 0.095 0.905 21 C -0.182 4.182 22 N -0.458 5.458 23 Si 0.803 3.197 24 H -0.181 1.181 25 H -0.191 1.191 26 H -0.192 1.192 27 C -0.173 4.173 28 C -0.153 4.153 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.231 0.769 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.236 0.764 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.149 0.851 42 H 0.125 0.875 43 H 0.098 0.902 44 H 0.127 0.873 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.283 19.680 -13.725 24.028 hybrid contribution 1.037 -0.402 2.156 2.426 sum -0.247 19.279 -11.569 22.485 Atomic orbital electron populations 1.22546 0.95336 1.03197 1.03360 1.21817 0.93698 0.96214 0.81985 0.86232 1.86517 1.77427 1.29986 1.43964 1.24121 1.00066 0.94315 1.03693 0.87650 1.21982 0.92332 1.03199 1.02609 1.86969 1.75087 1.13427 1.26990 1.24002 1.05456 0.98339 0.97960 1.21429 0.98431 0.87054 0.85382 0.88248 1.86645 1.24832 1.70347 1.54875 1.23464 0.99465 0.83242 0.98122 1.85871 1.75608 1.30560 1.32677 1.18661 1.05574 0.94015 0.86081 1.20701 1.02945 1.00178 0.94395 1.20812 1.06650 0.97670 0.97585 1.17968 0.90620 0.92338 0.93895 1.19736 1.45150 0.92314 0.95552 0.90513 1.26757 0.91266 0.97929 1.02237 1.69896 1.35896 1.07664 1.32363 0.85159 0.78838 0.78307 0.77386 1.18091 1.19064 1.19179 1.20899 1.01906 1.00493 0.93989 1.20012 1.03898 0.93633 0.97796 0.90359 0.91517 0.91974 0.76901 0.91859 0.90714 0.92291 0.87911 0.87378 0.76443 0.91357 0.90773 0.85110 0.87504 0.90219 0.87313 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.14 9.30 71.98 0.67 -1.47 16 2 C 0.12 1.49 3.38 30.60 0.10 1.59 16 3 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 4 O -0.57 -9.38 12.65 -148.98 -1.88 -11.27 16 5 C -0.09 -1.10 2.70 30.60 0.08 -1.01 16 6 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 7 C -0.14 -1.64 8.96 71.98 0.64 -0.99 16 8 S -0.25 -4.11 18.29 -56.49 -1.03 -5.15 16 9 C -0.11 -1.66 5.30 71.98 0.38 -1.28 16 10 C 0.14 3.05 3.24 30.60 0.10 3.15 16 11 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 12 O -0.56 -13.99 13.06 -144.34 -1.88 -15.87 16 13 C 0.03 0.91 4.37 71.98 0.31 1.23 16 14 O -0.33 -12.84 10.09 -85.25 -0.86 -13.70 16 15 C 0.00 0.02 6.71 22.79 0.15 0.18 16 16 C -0.16 -6.96 8.96 22.11 0.20 -6.76 16 17 C -0.21 -9.99 9.74 22.49 0.22 -9.77 16 18 C 0.05 2.93 5.57 -21.28 -0.12 2.81 16 19 C -0.50 -26.84 9.04 23.40 0.21 -26.63 16 20 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 21 C 0.03 1.62 5.13 85.24 0.44 2.06 16 22 N -0.83 -44.02 10.96 21.82 0.24 -43.79 16 23 Si 0.98 38.33 29.60 68.60 2.03 40.36 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 25 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 26 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 27 C -0.15 -8.26 8.64 22.48 0.19 -8.07 16 28 C -0.13 -6.63 9.92 22.11 0.22 -6.41 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.87 6.91 -2.39 -0.02 0.85 16 32 H 0.38 5.75 7.85 -74.06 -0.58 5.16 16 33 H 0.06 0.91 7.68 -2.39 -0.02 0.89 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.63 6.92 -2.39 -0.02 0.62 16 36 H 0.10 1.28 7.15 -2.39 -0.02 1.26 16 37 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.39 6.98 9.05 -74.06 -0.67 6.31 16 39 H 0.07 1.65 7.64 -2.39 -0.02 1.63 16 40 H 0.07 1.77 7.66 -2.39 -0.02 1.75 16 41 H 0.13 4.44 6.27 -2.91 -0.02 4.42 16 42 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 43 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 44 H 0.11 6.10 6.16 -2.91 -0.02 6.09 16 45 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -65.10 379.52 0.17 -64.93 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -0.25 Total: 35.87 kcal Atomic # 6 Polarization: -55.20 SS G_CDS: 3.81 Total: -51.39 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.24 Total: -43.79 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -4.63 Total: -40.84 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -1.03 Total: -5.15 kcal Total: -65.10 0.17 -64.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594890828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.859 kcal (2) G-P(sol) polarization free energy of solvation -65.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds