Wall clock time and date at job start Sat Apr 11 2020 01:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47416 * 2 1 4 4 S 1.81400 * 109.46857 * 120.00340 * 2 1 3 5 5 C 1.81397 * 102.99996 * 294.99771 * 4 2 1 6 6 C 1.53002 * 109.47174 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.46803 * 60.00076 * 6 5 4 8 8 O 1.42899 * 109.47109 * 300.00091 * 6 5 4 9 9 C 1.52994 * 109.47283 * 179.97438 * 6 5 4 10 10 O 1.42899 * 109.47365 * 184.99916 * 9 6 5 11 11 C 1.35674 * 117.00204 * 179.97438 * 10 9 6 12 12 C 1.39320 * 119.81769 * 359.72804 * 11 10 9 13 13 C 1.36436 * 120.18515 * 179.75373 * 12 11 10 14 14 C 1.40833 * 119.80869 * 0.51698 * 13 12 11 15 15 C 1.41220 * 120.17585 * 179.71543 * 14 13 12 16 16 H 1.08003 * 119.99504 * 155.17203 * 15 14 13 17 17 C 1.39887 * 120.00296 * 335.16384 * 15 14 13 18 18 N 1.30884 * 120.00003 * 342.16234 * 17 15 14 19 19 Si 1.86798 * 119.99934 * 162.15521 * 17 15 14 20 20 H 1.48504 * 109.46951 * 94.66227 * 19 17 15 21 21 H 1.48500 * 109.47289 * 214.65929 * 19 17 15 22 22 H 1.48496 * 109.47449 * 334.66125 * 19 17 15 23 23 C 1.40836 * 119.64439 * 359.73898 * 14 13 12 24 24 C 1.36433 * 119.81001 * 0.02562 * 23 14 13 25 25 C 1.52998 * 109.47117 * 239.99907 * 2 1 3 26 26 H 1.09000 * 109.47499 * 300.00346 * 25 2 1 27 27 C 1.52994 * 109.47535 * 180.02562 * 25 2 1 28 28 O 1.42909 * 109.46961 * 59.99949 * 25 2 1 29 29 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47176 * 299.99894 * 1 2 3 31 31 H 1.09001 * 109.47258 * 59.99953 * 1 2 3 32 32 H 1.09006 * 109.47015 * 300.00163 * 5 4 2 33 33 H 1.08995 * 109.47293 * 60.00434 * 5 4 2 34 34 H 0.96698 * 113.99966 * 299.99576 * 8 6 5 35 35 H 1.09006 * 109.47519 * 305.00290 * 9 6 5 36 36 H 1.08998 * 109.47482 * 64.99635 * 9 6 5 37 37 H 1.08004 * 119.90293 * 0.02562 * 12 11 10 38 38 H 1.07996 * 120.09251 * 180.24932 * 13 12 11 39 39 H 0.96997 * 119.99957 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.09247 * 179.97438 * 23 14 13 41 41 H 1.08004 * 119.90552 * 179.97438 * 24 23 14 42 42 H 1.09001 * 109.47167 * 59.99940 * 27 25 2 43 43 H 1.08996 * 109.47676 * 180.02562 * 27 25 2 44 44 H 1.09006 * 109.46673 * 300.00213 * 27 25 2 45 45 H 0.96698 * 113.99959 * 179.97438 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1346 -0.8552 1.4811 5 6 1.5664 0.2152 2.8309 6 6 2.0049 -0.3780 4.1713 7 1 3.0922 -0.4505 4.1982 8 8 1.4368 -1.6802 4.3246 9 6 1.5263 0.5251 5.3097 10 8 2.0340 0.0349 6.5523 11 6 1.7003 0.7274 7.6702 12 6 0.9010 1.8640 7.5684 13 6 0.5567 2.5631 8.6882 14 6 1.0207 2.1391 9.9485 15 6 0.6741 2.8605 11.1120 16 1 0.6659 2.3654 12.0719 17 6 0.3415 4.2162 11.0215 18 7 0.6771 4.9028 9.9589 19 14 -0.5817 5.0467 12.4170 20 1 0.3880 5.7026 13.3306 21 1 -1.5060 6.0672 11.8608 22 1 -1.3609 4.0305 13.1689 23 6 1.8327 0.9922 10.0421 24 6 2.1638 0.3016 8.9131 25 6 2.0400 -0.7213 -1.2492 26 1 1.6767 -1.7489 -1.2493 27 6 3.5700 -0.7219 -1.2490 28 8 1.5636 -0.0476 -2.4160 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.0002 1.2084 2.7142 33 1 0.4792 0.2880 2.8038 34 1 0.4699 -1.6917 4.3102 35 1 1.8875 1.5402 5.1447 36 1 0.4367 0.5274 5.3381 37 1 0.5494 2.1899 6.6006 38 1 -0.0662 3.4416 8.6079 39 1 0.4461 5.8427 9.8959 40 1 2.1929 0.6608 11.0049 41 1 2.7868 -0.5779 8.9830 42 1 3.9330 -1.2360 -0.3590 43 1 3.9333 -1.2353 -2.1392 44 1 3.9336 0.3057 -1.2488 45 1 1.8493 -0.4509 -3.2472 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594890829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:16 Heat of formation + Delta-G solvation = -132.811322 kcal Electronic energy + Delta-G solvation = -24389.118417 eV Core-core repulsion = 20690.561672 eV Total energy + Delta-G solvation = -3698.556745 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.138 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.07606 -38.26550 -37.51102 -36.04490 -33.66730 -33.36316 -31.68382 -30.28325 -29.66938 -29.19300 -26.75293 -24.64347 -24.31826 -22.47645 -21.50058 -20.91974 -20.42373 -18.12070 -17.40988 -17.27200 -16.71483 -16.35539 -15.75008 -15.55787 -15.24439 -14.94990 -14.85691 -14.49930 -14.01632 -13.91960 -13.78010 -13.36656 -12.96059 -12.83741 -12.67163 -12.49179 -12.25835 -12.13559 -12.05248 -11.89501 -11.75380 -11.47825 -11.17300 -11.13698 -11.10211 -10.95501 -10.61564 -10.47670 -10.15732 -10.01921 -9.92955 -9.82019 -9.39323 -9.03750 -7.88116 -7.68318 -7.03760 -6.75481 -4.27511 1.19179 2.23746 2.74332 2.94022 3.06452 3.10619 3.19501 3.78812 3.83747 3.93298 4.25018 4.30509 4.44068 4.59207 4.68413 4.70579 4.82272 4.94804 4.99947 5.04238 5.18763 5.24893 5.33349 5.40804 5.47718 5.58728 5.59216 5.64642 5.78936 5.84330 5.92424 6.06690 6.25970 6.68278 6.86672 7.04395 7.16324 7.25373 7.37791 7.53334 7.59482 7.87405 7.97833 8.12746 8.41355 8.62236 8.87854 8.96543 10.19475 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.001967 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.075066 B =14234.869596 C =14948.758192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.066 4.066 3 H 0.091 0.909 4 S -0.206 6.206 5 C -0.125 4.125 6 C 0.129 3.871 7 H 0.114 0.886 8 O -0.540 6.540 9 C 0.044 3.956 10 O -0.317 6.317 11 C -0.011 4.011 12 C -0.174 4.174 13 C -0.135 4.135 14 C 0.087 3.913 15 C -0.462 4.462 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.800 5.800 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.195 4.195 24 C -0.111 4.111 25 C 0.124 3.876 26 H 0.064 0.936 27 C -0.189 4.189 28 O -0.565 6.565 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.373 0.627 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.279 0.721 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.232 -7.118 -21.156 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.195 4.195 3 H 0.110 0.890 4 S 0.021 5.979 5 C -0.274 4.274 6 C 0.069 3.931 7 H 0.132 0.868 8 O -0.345 6.345 9 C -0.035 4.035 10 O -0.233 6.233 11 C -0.054 4.054 12 C -0.193 4.193 13 C -0.154 4.154 14 C 0.085 3.915 15 C -0.492 4.492 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.427 5.427 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.215 4.215 24 C -0.130 4.130 25 C 0.064 3.936 26 H 0.082 0.918 27 C -0.247 4.247 28 O -0.371 6.371 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.220 0.780 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.138 0.862 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.283 -7.772 -20.721 22.168 hybrid contribution -1.505 1.942 -0.031 2.457 sum -0.222 -5.830 -20.752 21.556 Atomic orbital electron populations 1.21990 0.92644 1.03102 1.02487 1.23137 0.99630 1.02330 0.94415 0.89022 1.86943 1.74857 1.37338 0.98738 1.24181 1.04625 1.02012 0.96548 1.21553 1.00035 0.83113 0.88437 0.86810 1.86668 1.25045 1.27164 1.95603 1.23067 0.98402 0.97376 0.84638 1.85856 1.72140 1.52750 1.12543 1.18585 1.05741 0.95774 0.85307 1.20586 1.03288 0.97129 0.98317 1.20926 1.02132 1.00657 0.91682 1.17607 0.89519 0.91149 0.93234 1.19469 1.40900 0.94029 0.94839 0.90463 1.25881 0.93796 0.97711 0.96818 1.69841 1.35370 1.09118 1.28339 0.86331 0.80018 0.79217 0.81340 1.19625 1.20138 1.18463 1.20609 1.04270 1.00604 0.96020 1.19624 1.02706 1.00456 0.90199 1.21398 0.93199 0.94755 0.84269 0.91810 1.22595 0.95586 1.03344 1.03182 1.86482 1.77075 1.57769 1.15786 0.91474 0.92565 0.90981 0.88733 0.89365 0.77999 0.92160 0.92711 0.88963 0.86177 0.91019 0.88147 0.88419 0.90081 0.92196 0.91605 0.77122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.95 37.16 0.33 -0.84 16 2 C -0.07 -0.57 2.62 -26.73 -0.07 -0.64 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 4 S -0.21 -2.08 19.32 -107.50 -2.08 -4.15 16 5 C -0.12 -1.22 5.33 37.16 0.20 -1.03 16 6 C 0.13 1.62 3.30 -26.73 -0.09 1.53 16 7 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 8 O -0.54 -7.23 12.90 -40.06 -0.52 -7.74 16 9 C 0.04 0.66 4.37 37.15 0.16 0.82 16 10 O -0.32 -6.43 10.09 -23.55 -0.24 -6.67 16 11 C -0.01 -0.25 6.71 -38.78 -0.26 -0.51 16 12 C -0.17 -4.04 8.96 -39.83 -0.36 -4.40 16 13 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 14 C 0.09 2.32 5.57 -106.80 -0.60 1.73 16 15 C -0.46 -12.23 9.04 -37.83 -0.34 -12.57 16 16 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 17 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 18 N -0.80 -20.62 10.97 55.54 0.61 -20.01 16 19 Si 0.91 18.60 29.60 -169.99 -5.03 13.57 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 23 C -0.20 -4.83 9.74 -39.25 -0.38 -5.21 16 24 C -0.11 -2.60 9.92 -39.83 -0.40 -3.00 16 25 C 0.12 0.93 3.16 -26.73 -0.08 0.85 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 C -0.19 -1.31 9.30 37.15 0.35 -0.97 16 28 O -0.56 -4.12 12.65 -35.23 -0.45 -4.57 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.44 6.92 -51.93 -0.36 0.08 16 31 H 0.07 0.60 7.68 -51.93 -0.40 0.20 16 32 H 0.09 0.86 8.14 -51.92 -0.42 0.43 16 33 H 0.09 0.76 7.14 -51.93 -0.37 0.39 16 34 H 0.37 3.75 9.05 45.56 0.41 4.16 16 35 H 0.06 0.89 7.63 -51.93 -0.40 0.49 16 36 H 0.05 0.78 7.66 -51.93 -0.40 0.38 16 37 H 0.09 1.88 6.27 -52.48 -0.33 1.55 16 38 H 0.12 3.18 6.18 -52.49 -0.32 2.85 16 39 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 40 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 41 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 42 H 0.08 0.64 6.91 -51.93 -0.36 0.28 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.38 1.20 9.08 45.56 0.41 1.61 16 LS Contribution 381.43 15.07 5.75 5.75 Total: -1.00 -30.48 381.43 -9.38 -39.86 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.46 Total: 10.23 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -1.96 Total: -26.27 kcal Atomic # 7 Polarization: -20.62 SS G_CDS: 0.61 Total: -20.01 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -1.20 Total: -18.98 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 16 Polarization: -2.08 SS G_CDS: -2.08 Total: -4.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.48 -9.38 -39.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594890829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.949 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds