Wall clock time and date at job start Sat Apr 11 2020 01:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47416 * 2 1 4 4 S 1.81400 * 109.46857 * 120.00340 * 2 1 3 5 5 C 1.81397 * 102.99996 * 294.99771 * 4 2 1 6 6 C 1.53002 * 109.47174 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.46803 * 60.00076 * 6 5 4 8 8 O 1.42899 * 109.47109 * 300.00091 * 6 5 4 9 9 C 1.52994 * 109.47283 * 179.97438 * 6 5 4 10 10 O 1.42899 * 109.47365 * 184.99916 * 9 6 5 11 11 C 1.35674 * 117.00204 * 179.97438 * 10 9 6 12 12 C 1.39320 * 119.81769 * 359.72804 * 11 10 9 13 13 C 1.36436 * 120.18515 * 179.75373 * 12 11 10 14 14 C 1.40833 * 119.80869 * 0.51698 * 13 12 11 15 15 C 1.41220 * 120.17585 * 179.71543 * 14 13 12 16 16 H 1.08003 * 119.99504 * 155.17203 * 15 14 13 17 17 C 1.39887 * 120.00296 * 335.16384 * 15 14 13 18 18 N 1.30884 * 120.00003 * 342.16234 * 17 15 14 19 19 Si 1.86798 * 119.99934 * 162.15521 * 17 15 14 20 20 H 1.48504 * 109.46951 * 94.66227 * 19 17 15 21 21 H 1.48500 * 109.47289 * 214.65929 * 19 17 15 22 22 H 1.48496 * 109.47449 * 334.66125 * 19 17 15 23 23 C 1.40836 * 119.64439 * 359.73898 * 14 13 12 24 24 C 1.36433 * 119.81001 * 0.02562 * 23 14 13 25 25 C 1.52998 * 109.47117 * 239.99907 * 2 1 3 26 26 H 1.09000 * 109.47499 * 300.00346 * 25 2 1 27 27 C 1.52994 * 109.47535 * 180.02562 * 25 2 1 28 28 O 1.42909 * 109.46961 * 59.99949 * 25 2 1 29 29 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47176 * 299.99894 * 1 2 3 31 31 H 1.09001 * 109.47258 * 59.99953 * 1 2 3 32 32 H 1.09006 * 109.47015 * 300.00163 * 5 4 2 33 33 H 1.08995 * 109.47293 * 60.00434 * 5 4 2 34 34 H 0.96698 * 113.99966 * 299.99576 * 8 6 5 35 35 H 1.09006 * 109.47519 * 305.00290 * 9 6 5 36 36 H 1.08998 * 109.47482 * 64.99635 * 9 6 5 37 37 H 1.08004 * 119.90293 * 0.02562 * 12 11 10 38 38 H 1.07996 * 120.09251 * 180.24932 * 13 12 11 39 39 H 0.96997 * 119.99957 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.09247 * 179.97438 * 23 14 13 41 41 H 1.08004 * 119.90552 * 179.97438 * 24 23 14 42 42 H 1.09001 * 109.47167 * 59.99940 * 27 25 2 43 43 H 1.08996 * 109.47676 * 180.02562 * 27 25 2 44 44 H 1.09006 * 109.46673 * 300.00213 * 27 25 2 45 45 H 0.96698 * 113.99959 * 179.97438 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1346 -0.8552 1.4811 5 6 1.5664 0.2152 2.8309 6 6 2.0049 -0.3780 4.1713 7 1 3.0922 -0.4505 4.1982 8 8 1.4368 -1.6802 4.3246 9 6 1.5263 0.5251 5.3097 10 8 2.0340 0.0349 6.5523 11 6 1.7003 0.7274 7.6702 12 6 0.9010 1.8640 7.5684 13 6 0.5567 2.5631 8.6882 14 6 1.0207 2.1391 9.9485 15 6 0.6741 2.8605 11.1120 16 1 0.6659 2.3654 12.0719 17 6 0.3415 4.2162 11.0215 18 7 0.6771 4.9028 9.9589 19 14 -0.5817 5.0467 12.4170 20 1 0.3880 5.7026 13.3306 21 1 -1.5060 6.0672 11.8608 22 1 -1.3609 4.0305 13.1689 23 6 1.8327 0.9922 10.0421 24 6 2.1638 0.3016 8.9131 25 6 2.0400 -0.7213 -1.2492 26 1 1.6767 -1.7489 -1.2493 27 6 3.5700 -0.7219 -1.2490 28 8 1.5636 -0.0476 -2.4160 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.0002 1.2084 2.7142 33 1 0.4792 0.2880 2.8038 34 1 0.4699 -1.6917 4.3102 35 1 1.8875 1.5402 5.1447 36 1 0.4367 0.5274 5.3381 37 1 0.5494 2.1899 6.6006 38 1 -0.0662 3.4416 8.6079 39 1 0.4461 5.8427 9.8959 40 1 2.1929 0.6608 11.0049 41 1 2.7868 -0.5779 8.9830 42 1 3.9330 -1.2360 -0.3590 43 1 3.9333 -1.2353 -2.1392 44 1 3.9336 0.3057 -1.2488 45 1 1.8493 -0.4509 -3.2472 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594890829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:15 Heat of formation + Delta-G solvation = -152.899858 kcal Electronic energy + Delta-G solvation = -24389.989522 eV Core-core repulsion = 20690.561672 eV Total energy + Delta-G solvation = -3699.427850 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.138 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.66066 -38.90808 -38.80498 -37.59557 -35.21234 -34.27636 -32.70731 -31.54418 -31.10221 -30.78398 -28.02145 -26.43058 -24.91996 -23.69289 -22.79499 -22.21033 -21.95891 -19.27924 -18.80313 -18.66242 -17.98257 -17.51472 -16.96084 -16.52510 -16.24747 -16.07863 -15.77808 -15.72302 -15.45840 -15.34863 -14.74712 -14.48411 -14.21013 -14.11117 -13.82110 -13.66765 -13.46054 -13.39569 -13.23564 -12.89767 -12.76511 -12.75125 -12.68699 -12.61184 -12.32841 -12.03257 -11.78214 -11.70637 -11.60318 -11.29464 -11.09068 -11.02049 -10.87511 -10.75616 -9.57805 -8.91866 -8.65589 -8.61149 -6.23241 0.43444 0.92798 1.03577 1.39468 1.48948 1.49321 1.55306 2.22438 2.49031 2.71546 3.29017 3.37925 3.65719 3.69411 3.74751 3.82392 3.88525 3.90331 4.09605 4.15305 4.27478 4.33692 4.35792 4.40920 4.45593 4.50057 4.70386 4.81142 4.84072 4.91120 4.91951 5.00043 5.00824 5.14540 5.18505 5.26867 5.36098 5.51206 5.65331 5.95870 6.05522 6.22804 6.54871 6.73211 6.79028 6.82512 6.94558 7.08926 8.35890 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.001967 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.075066 B =14234.869596 C =14948.758192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 H 0.087 0.913 4 S -0.227 6.227 5 C -0.116 4.116 6 C 0.141 3.859 7 H 0.102 0.898 8 O -0.557 6.557 9 C 0.036 3.964 10 O -0.328 6.328 11 C -0.001 4.001 12 C -0.175 4.175 13 C -0.155 4.155 14 C 0.053 3.947 15 C -0.499 4.499 16 H 0.075 0.925 17 C 0.034 3.966 18 N -0.831 5.831 19 Si 0.981 3.019 20 H -0.264 1.264 21 H -0.266 1.266 22 H -0.260 1.260 23 C -0.205 4.205 24 C -0.123 4.123 25 C 0.126 3.874 26 H 0.066 0.934 27 C -0.186 4.186 28 O -0.577 6.577 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.387 0.613 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.287 0.713 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.302 -7.122 -22.420 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.190 4.190 3 H 0.105 0.895 4 S 0.000 6.000 5 C -0.265 4.265 6 C 0.080 3.920 7 H 0.120 0.880 8 O -0.364 6.364 9 C -0.042 4.042 10 O -0.244 6.244 11 C -0.044 4.044 12 C -0.193 4.193 13 C -0.174 4.174 14 C 0.051 3.949 15 C -0.529 4.529 16 H 0.093 0.907 17 C -0.180 4.180 18 N -0.458 5.458 19 Si 0.802 3.198 20 H -0.189 1.189 21 H -0.191 1.191 22 H -0.183 1.183 23 C -0.224 4.224 24 C -0.141 4.141 25 C 0.066 3.934 26 H 0.084 0.916 27 C -0.243 4.243 28 O -0.386 6.386 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.236 0.764 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.138 0.862 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.127 0.873 41 H 0.135 0.865 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 0.753 -7.796 -22.021 23.372 hybrid contribution -1.283 1.836 0.170 2.246 sum -0.529 -5.959 -21.851 22.655 Atomic orbital electron populations 1.21959 0.92221 1.03155 1.02534 1.23150 0.99887 1.01881 0.94081 0.89499 1.87039 1.75294 1.37869 0.99785 1.24050 1.05617 1.02006 0.94807 1.21378 0.99343 0.82514 0.88751 0.88009 1.86637 1.26497 1.27554 1.95681 1.23425 0.99283 0.98383 0.83109 1.85851 1.72392 1.52764 1.13370 1.18691 1.04266 0.95216 0.86270 1.20806 1.02872 0.96835 0.98821 1.20911 1.03036 1.01019 0.92461 1.17974 0.90650 0.92298 0.93958 1.19711 1.43066 0.95219 0.94867 0.90655 1.26719 0.93956 0.97797 0.99533 1.69886 1.35988 1.09780 1.30156 0.85212 0.78623 0.78051 0.77933 1.18880 1.19076 1.18331 1.20797 1.04147 1.00401 0.97083 1.19902 1.02921 1.01030 0.90270 1.21337 0.93403 0.94605 0.84048 0.91594 1.22551 0.95234 1.03027 1.03504 1.86438 1.77307 1.58255 1.16618 0.91398 0.92274 0.91127 0.87790 0.87806 0.76385 0.91480 0.91371 0.86199 0.87502 0.90247 0.87291 0.86465 0.91182 0.90454 0.92192 0.75063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.95 71.98 0.64 -1.40 16 2 C -0.06 -0.96 2.62 30.59 0.08 -0.88 16 3 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 4 S -0.23 -4.25 19.32 -56.49 -1.09 -5.34 16 5 C -0.12 -2.04 5.33 71.98 0.38 -1.66 16 6 C 0.14 3.29 3.30 30.59 0.10 3.39 16 7 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 8 O -0.56 -13.97 12.90 -144.36 -1.86 -15.83 16 9 C 0.04 1.01 4.37 71.98 0.31 1.32 16 10 O -0.33 -12.81 10.09 -85.29 -0.86 -13.67 16 11 C 0.00 -0.03 6.71 22.79 0.15 0.13 16 12 C -0.17 -8.00 8.96 22.11 0.20 -7.80 16 13 C -0.15 -8.11 8.64 22.48 0.19 -7.91 16 14 C 0.05 2.91 5.57 -21.28 -0.12 2.79 16 15 C -0.50 -27.04 9.04 23.40 0.21 -26.83 16 16 H 0.08 3.94 7.91 -2.91 -0.02 3.91 16 17 C 0.03 1.70 5.13 85.23 0.44 2.14 16 18 N -0.83 -43.40 10.97 21.82 0.24 -43.16 16 19 Si 0.98 38.20 29.60 68.60 2.03 40.23 16 20 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 21 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 23 C -0.20 -10.25 9.74 22.48 0.22 -10.03 16 24 C -0.12 -5.70 9.92 22.11 0.22 -5.48 16 25 C 0.13 1.70 3.16 30.59 0.10 1.79 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 C -0.19 -2.31 9.30 71.98 0.67 -1.64 16 28 O -0.58 -7.36 12.65 -148.98 -1.88 -9.25 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.81 6.92 -2.38 -0.02 0.80 16 31 H 0.07 1.07 7.68 -2.39 -0.02 1.05 16 32 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.10 1.51 7.14 -2.39 -0.02 1.49 16 34 H 0.39 7.01 9.05 -74.06 -0.67 6.34 16 35 H 0.07 1.84 7.63 -2.38 -0.02 1.82 16 36 H 0.07 1.77 7.66 -2.39 -0.02 1.75 16 37 H 0.12 4.68 6.27 -2.91 -0.02 4.66 16 38 H 0.11 5.80 6.18 -2.91 -0.02 5.78 16 39 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 40 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 41 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 42 H 0.07 1.04 6.91 -2.39 -0.02 1.02 16 43 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.40 1.70 9.08 -74.06 -0.67 1.03 16 Total: -1.00 -65.45 381.43 0.04 -65.41 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.34 Total: 33.67 kcal Atomic # 6 Polarization: -55.87 SS G_CDS: 3.80 Total: -52.06 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.24 Total: -43.16 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -4.61 Total: -38.75 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Atomic # 16 Polarization: -4.25 SS G_CDS: -1.09 Total: -5.34 kcal Total: -65.45 0.04 -65.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594890829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.491 kcal (2) G-P(sol) polarization free energy of solvation -65.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds