Wall clock time and date at job start Sat Apr 11 2020 01:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46765 * 2 1 4 4 C 1.52994 * 109.47521 * 239.99637 * 2 1 3 5 5 C 1.52998 * 109.47350 * 174.99691 * 4 2 1 6 6 O 1.42904 * 109.47075 * 179.97438 * 5 4 2 7 7 S 1.81404 * 109.47180 * 119.99383 * 2 1 3 8 8 C 1.81399 * 103.00032 * 295.00181 * 7 2 1 9 9 C 1.53001 * 109.47119 * 179.97438 * 8 7 2 10 10 H 1.08997 * 109.47007 * 60.00420 * 9 8 7 11 11 O 1.42896 * 109.47083 * 300.00046 * 9 8 7 12 12 C 1.52997 * 109.47132 * 180.02562 * 9 8 7 13 13 O 1.42902 * 109.47466 * 185.00010 * 12 9 8 14 14 C 1.35667 * 117.00518 * 179.97438 * 13 12 9 15 15 C 1.39312 * 119.81632 * 359.72466 * 14 13 12 16 16 C 1.36445 * 120.18543 * 179.75813 * 15 14 13 17 17 C 1.40827 * 119.80720 * 0.51724 * 16 15 14 18 18 C 1.41220 * 120.17659 * 179.71741 * 17 16 15 19 19 H 1.08004 * 119.99804 * 24.56965 * 18 17 16 20 20 C 1.39887 * 120.00150 * 204.56761 * 18 17 16 21 21 N 1.30879 * 119.99943 * 17.93998 * 20 18 17 22 22 Si 1.86795 * 120.00314 * 197.93111 * 20 18 17 23 23 H 1.48503 * 109.47144 * 60.00350 * 22 20 18 24 24 H 1.48506 * 109.47445 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47238 * 300.00519 * 22 20 18 26 26 C 1.40827 * 119.64535 * 359.73868 * 17 16 15 27 27 C 1.36436 * 119.81313 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47587 * 300.00039 * 1 2 3 30 30 H 1.08997 * 109.47347 * 60.00787 * 1 2 3 31 31 H 1.09002 * 109.47030 * 294.99813 * 4 2 1 32 32 H 1.09000 * 109.47022 * 54.99248 * 4 2 1 33 33 H 1.08994 * 109.47301 * 300.00300 * 5 4 2 34 34 H 1.09004 * 109.46781 * 60.00133 * 5 4 2 35 35 H 0.96694 * 113.99890 * 180.02562 * 6 5 4 36 36 H 1.09008 * 109.46858 * 59.99712 * 8 7 2 37 37 H 1.08999 * 109.47512 * 299.99884 * 8 7 2 38 38 H 0.96701 * 114.00229 * 300.00127 * 11 9 8 39 39 H 1.09007 * 109.47060 * 304.99996 * 12 9 8 40 40 H 1.09004 * 109.47248 * 64.99998 * 12 9 8 41 41 H 1.08004 * 119.91010 * 0.02562 * 15 14 13 42 42 H 1.08004 * 120.09341 * 180.25608 * 16 15 14 43 43 H 0.96999 * 120.00095 * 179.97438 * 21 20 18 44 44 H 1.08005 * 120.09520 * 179.97438 * 26 17 16 45 45 H 1.08000 * 119.90951 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6132 -1.3136 6 8 4.0413 -1.2875 -2.4800 7 16 2.1346 -0.8550 1.4812 8 6 1.5664 0.2156 2.8309 9 6 2.0039 -0.3781 4.1715 10 1 3.0910 -0.4512 4.1989 11 8 1.4349 -1.6799 4.3243 12 6 1.5240 0.5245 5.3098 13 8 2.0308 0.0340 6.5527 14 6 1.6960 0.7259 7.6706 15 6 0.8967 1.8623 7.5684 16 6 0.5514 2.5611 8.6884 17 6 1.0144 2.1367 9.9488 18 6 0.6667 2.8575 11.1123 19 1 -0.2289 3.4611 11.1262 20 6 1.4821 2.7897 12.2470 21 7 2.7160 2.3664 12.1417 22 14 0.8099 3.3036 13.9123 23 1 -0.3577 2.4538 14.2585 24 1 1.8652 3.1396 14.9442 25 1 0.3879 4.7263 13.8583 26 6 1.8264 0.9900 10.0427 27 6 2.1586 0.2997 8.9136 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.7517 -1.7716 -1.2054 32 1 1.6053 -0.2619 -2.1369 33 1 3.8531 0.4370 -1.3573 34 1 3.9994 -1.0727 -0.4258 35 1 5.0020 -1.2599 -2.5854 36 1 0.4791 0.2884 2.8036 37 1 2.0000 1.2087 2.7141 38 1 0.4680 -1.6909 4.3093 39 1 1.8853 1.5397 5.1455 40 1 0.4343 0.5265 5.3373 41 1 0.5458 2.1887 6.6006 42 1 -0.0718 3.4395 8.6079 43 1 3.2816 2.3197 12.9284 44 1 2.1859 0.6582 11.0056 45 1 2.7816 -0.5797 8.9838 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594891304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:31 Heat of formation + Delta-G solvation = -136.198254 kcal Electronic energy + Delta-G solvation = -24145.560982 eV Core-core repulsion = 20446.857368 eV Total energy + Delta-G solvation = -3698.703614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.138 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.09217 -37.67358 -37.51062 -36.05880 -35.10880 -33.34530 -31.70884 -29.87028 -29.53463 -29.05053 -26.77898 -24.65974 -23.82461 -22.54014 -21.63363 -20.71788 -20.63956 -17.80909 -17.40429 -17.28283 -16.91376 -16.54025 -16.32492 -15.41891 -15.28777 -15.03164 -14.84136 -14.50431 -14.22717 -14.00679 -13.92325 -13.52810 -13.02248 -12.75748 -12.66999 -12.45743 -12.32812 -12.18373 -11.85705 -11.76705 -11.55950 -11.48122 -11.44356 -11.14508 -11.03108 -10.92548 -10.66415 -10.41473 -10.11683 -9.99927 -9.97165 -9.86516 -9.36439 -9.04150 -7.89781 -7.67298 -7.06347 -6.74583 -4.28058 1.25791 2.24266 2.76646 2.92216 3.06649 3.08833 3.20367 3.67147 3.79265 3.93437 4.28508 4.34078 4.48115 4.59408 4.67326 4.74417 4.81189 4.92777 4.95656 5.01871 5.09268 5.15548 5.24942 5.28067 5.36977 5.53862 5.57196 5.63258 5.64211 5.73270 5.90154 6.01670 6.19698 6.69614 6.94808 7.08270 7.15803 7.22393 7.42923 7.52665 7.59395 7.75772 7.97816 8.17795 8.41656 8.62256 8.87394 8.95855 10.19919 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.037433 B = 0.001781 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.832221 B =15715.285992 C =15939.650690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.067 4.067 3 H 0.087 0.913 4 C -0.099 4.099 5 C 0.071 3.929 6 O -0.577 6.577 7 S -0.218 6.218 8 C -0.126 4.126 9 C 0.129 3.871 10 H 0.114 0.886 11 O -0.540 6.540 12 C 0.043 3.957 13 O -0.316 6.316 14 C -0.010 4.010 15 C -0.168 4.168 16 C -0.199 4.199 17 C 0.088 3.912 18 C -0.464 4.464 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.798 5.798 22 Si 0.908 3.092 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.133 4.133 27 C -0.118 4.118 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.381 0.619 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.373 0.627 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.281 0.719 44 H 0.126 0.874 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.001 -3.158 -21.989 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.196 4.196 3 H 0.105 0.895 4 C -0.137 4.137 5 C -0.007 4.007 6 O -0.383 6.383 7 S 0.010 5.990 8 C -0.275 4.275 9 C 0.068 3.932 10 H 0.131 0.869 11 O -0.344 6.344 12 C -0.035 4.035 13 O -0.232 6.232 14 C -0.054 4.054 15 C -0.187 4.187 16 C -0.219 4.219 17 C 0.086 3.914 18 C -0.494 4.494 19 H 0.094 0.906 20 C -0.142 4.142 21 N -0.424 5.424 22 Si 0.733 3.267 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.153 4.153 27 C -0.137 4.137 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.228 0.772 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.220 0.780 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.144 0.856 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.094 -4.579 -21.846 22.321 hybrid contribution -1.040 2.224 0.719 2.559 sum -1.134 -2.355 -21.127 21.288 Atomic orbital electron populations 1.22066 0.92735 1.03445 1.02352 1.23143 0.99236 1.01792 0.95401 0.89453 1.21306 0.94631 1.02074 0.95695 1.22294 0.94643 0.95838 0.87917 1.86428 1.27404 1.78804 1.45651 1.87197 1.74944 1.37646 0.99198 1.24167 1.04486 1.01946 0.96855 1.21559 1.00027 0.83146 0.88477 0.86867 1.86679 1.24982 1.27142 1.95596 1.23073 0.98335 0.97318 0.84780 1.85882 1.72096 1.52726 1.12479 1.18606 1.05140 0.96168 0.85442 1.20384 1.03093 0.97407 0.97799 1.20546 1.07867 1.01212 0.92258 1.17598 0.90895 0.91025 0.91889 1.19430 1.08210 1.25772 0.95959 0.90584 1.25881 0.93944 0.93373 1.01009 1.69822 1.05429 1.35447 1.31697 0.86375 0.79604 0.79959 0.80806 1.18861 1.20363 1.19111 1.20986 1.02082 0.95358 0.96845 1.19847 1.02730 1.00842 0.90248 0.91043 0.92248 0.91659 0.90126 0.89967 0.93662 0.92141 0.77180 0.89487 0.88908 0.78043 0.92311 0.92787 0.89022 0.88777 0.90817 0.85627 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.10 37.15 0.34 -0.60 16 2 C -0.07 -0.48 2.82 -26.74 -0.08 -0.56 16 3 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 4 C -0.10 -0.73 5.05 -26.74 -0.14 -0.87 16 5 C 0.07 0.54 6.87 37.16 0.26 0.79 16 6 O -0.58 -4.70 13.66 -35.23 -0.48 -5.18 16 7 S -0.22 -2.12 19.60 -107.50 -2.11 -4.23 16 8 C -0.13 -1.16 5.33 37.16 0.20 -0.96 16 9 C 0.13 1.58 3.30 -26.73 -0.09 1.50 16 10 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 11 O -0.54 -7.23 12.90 -40.11 -0.52 -7.75 16 12 C 0.04 0.64 4.36 37.16 0.16 0.80 16 13 O -0.32 -6.40 10.09 -23.58 -0.24 -6.64 16 14 C -0.01 -0.24 6.71 -38.78 -0.26 -0.50 16 15 C -0.17 -3.74 8.96 -39.83 -0.36 -4.09 16 16 C -0.20 -4.84 9.74 -39.25 -0.38 -5.23 16 17 C 0.09 2.35 5.57 -106.81 -0.60 1.75 16 18 C -0.46 -12.24 9.04 -37.83 -0.34 -12.58 16 19 H 0.08 1.92 7.91 -52.48 -0.41 1.51 16 20 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 21 N -0.80 -20.60 10.96 55.54 0.61 -19.99 16 22 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 C -0.13 -3.48 8.64 -39.25 -0.34 -3.82 16 27 C -0.12 -2.87 9.92 -39.83 -0.40 -3.26 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.37 6.92 -51.93 -0.36 0.01 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.50 7.13 -51.93 -0.37 0.13 16 35 H 0.38 1.45 9.12 45.56 0.42 1.86 16 36 H 0.09 0.69 7.14 -51.92 -0.37 0.32 16 37 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.37 3.72 9.04 45.56 0.41 4.13 16 39 H 0.06 0.83 7.63 -51.93 -0.40 0.43 16 40 H 0.05 0.74 7.66 -51.93 -0.40 0.34 16 41 H 0.09 1.73 6.27 -52.48 -0.33 1.40 16 42 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 43 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 44 H 0.13 3.35 6.16 -52.48 -0.32 3.03 16 45 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 383.23 15.07 5.78 5.78 Total: -1.00 -31.01 383.23 -9.59 -40.60 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.50 Total: 9.70 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -2.11 Total: -25.84 kcal Atomic # 7 Polarization: -20.60 SS G_CDS: 0.61 Total: -19.99 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -1.24 Total: -19.57 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: -2.12 SS G_CDS: -2.11 Total: -4.23 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.01 -9.59 -40.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594891304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.600 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds