Wall clock time and date at job start Sat Apr 11 2020 01:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46765 * 2 1 4 4 C 1.52994 * 109.47521 * 239.99637 * 2 1 3 5 5 C 1.52998 * 109.47350 * 174.99691 * 4 2 1 6 6 O 1.42904 * 109.47075 * 179.97438 * 5 4 2 7 7 S 1.81404 * 109.47180 * 119.99383 * 2 1 3 8 8 C 1.81399 * 103.00032 * 295.00181 * 7 2 1 9 9 C 1.53001 * 109.47119 * 179.97438 * 8 7 2 10 10 H 1.08997 * 109.47007 * 60.00420 * 9 8 7 11 11 O 1.42896 * 109.47083 * 300.00046 * 9 8 7 12 12 C 1.52997 * 109.47132 * 180.02562 * 9 8 7 13 13 O 1.42902 * 109.47466 * 185.00010 * 12 9 8 14 14 C 1.35667 * 117.00518 * 179.97438 * 13 12 9 15 15 C 1.39312 * 119.81632 * 359.72466 * 14 13 12 16 16 C 1.36445 * 120.18543 * 179.75813 * 15 14 13 17 17 C 1.40827 * 119.80720 * 0.51724 * 16 15 14 18 18 C 1.41220 * 120.17659 * 179.71741 * 17 16 15 19 19 H 1.08004 * 119.99804 * 24.56965 * 18 17 16 20 20 C 1.39887 * 120.00150 * 204.56761 * 18 17 16 21 21 N 1.30879 * 119.99943 * 17.93998 * 20 18 17 22 22 Si 1.86795 * 120.00314 * 197.93111 * 20 18 17 23 23 H 1.48503 * 109.47144 * 60.00350 * 22 20 18 24 24 H 1.48506 * 109.47445 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47238 * 300.00519 * 22 20 18 26 26 C 1.40827 * 119.64535 * 359.73868 * 17 16 15 27 27 C 1.36436 * 119.81313 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47587 * 300.00039 * 1 2 3 30 30 H 1.08997 * 109.47347 * 60.00787 * 1 2 3 31 31 H 1.09002 * 109.47030 * 294.99813 * 4 2 1 32 32 H 1.09000 * 109.47022 * 54.99248 * 4 2 1 33 33 H 1.08994 * 109.47301 * 300.00300 * 5 4 2 34 34 H 1.09004 * 109.46781 * 60.00133 * 5 4 2 35 35 H 0.96694 * 113.99890 * 180.02562 * 6 5 4 36 36 H 1.09008 * 109.46858 * 59.99712 * 8 7 2 37 37 H 1.08999 * 109.47512 * 299.99884 * 8 7 2 38 38 H 0.96701 * 114.00229 * 300.00127 * 11 9 8 39 39 H 1.09007 * 109.47060 * 304.99996 * 12 9 8 40 40 H 1.09004 * 109.47248 * 64.99998 * 12 9 8 41 41 H 1.08004 * 119.91010 * 0.02562 * 15 14 13 42 42 H 1.08004 * 120.09341 * 180.25608 * 16 15 14 43 43 H 0.96999 * 120.00095 * 179.97438 * 21 20 18 44 44 H 1.08005 * 120.09520 * 179.97438 * 26 17 16 45 45 H 1.08000 * 119.90951 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6132 -1.3136 6 8 4.0413 -1.2875 -2.4800 7 16 2.1346 -0.8550 1.4812 8 6 1.5664 0.2156 2.8309 9 6 2.0039 -0.3781 4.1715 10 1 3.0910 -0.4512 4.1989 11 8 1.4349 -1.6799 4.3243 12 6 1.5240 0.5245 5.3098 13 8 2.0308 0.0340 6.5527 14 6 1.6960 0.7259 7.6706 15 6 0.8967 1.8623 7.5684 16 6 0.5514 2.5611 8.6884 17 6 1.0144 2.1367 9.9488 18 6 0.6667 2.8575 11.1123 19 1 -0.2289 3.4611 11.1262 20 6 1.4821 2.7897 12.2470 21 7 2.7160 2.3664 12.1417 22 14 0.8099 3.3036 13.9123 23 1 -0.3577 2.4538 14.2585 24 1 1.8652 3.1396 14.9442 25 1 0.3879 4.7263 13.8583 26 6 1.8264 0.9900 10.0427 27 6 2.1586 0.2997 8.9136 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.7517 -1.7716 -1.2054 32 1 1.6053 -0.2619 -2.1369 33 1 3.8531 0.4370 -1.3573 34 1 3.9994 -1.0727 -0.4258 35 1 5.0020 -1.2599 -2.5854 36 1 0.4791 0.2884 2.8036 37 1 2.0000 1.2087 2.7141 38 1 0.4680 -1.6909 4.3093 39 1 1.8853 1.5397 5.1455 40 1 0.4343 0.5265 5.3373 41 1 0.5458 2.1887 6.6006 42 1 -0.0718 3.4395 8.6079 43 1 3.2816 2.3197 12.9284 44 1 2.1859 0.6582 11.0056 45 1 2.7816 -0.5797 8.9838 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594891304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:30 Heat of formation + Delta-G solvation = -157.084045 kcal Electronic energy + Delta-G solvation = -24146.466658 eV Core-core repulsion = 20446.857368 eV Total energy + Delta-G solvation = -3699.609290 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.65732 -38.88323 -38.23230 -37.59511 -35.66788 -35.18734 -32.72937 -31.61965 -30.92189 -30.14194 -27.98374 -26.43570 -24.36665 -23.69051 -22.62039 -22.40275 -22.06580 -19.26366 -18.86470 -18.30876 -17.82148 -17.48193 -17.41790 -17.03768 -16.18533 -16.07224 -15.74936 -15.74214 -15.48115 -15.31569 -14.91001 -14.63100 -14.28089 -14.08064 -13.93815 -13.69704 -13.46960 -13.29413 -13.07208 -12.97619 -12.78912 -12.66588 -12.48406 -12.33149 -12.19848 -12.04618 -11.96836 -11.71890 -11.59721 -11.28917 -11.04286 -10.99560 -10.87620 -10.61862 -9.56728 -8.93353 -8.63254 -8.59856 -6.23095 0.56100 0.94978 1.02278 1.39773 1.50583 1.54776 1.58250 2.22560 2.51122 2.72564 3.17383 3.40384 3.69703 3.76611 3.80037 3.87244 3.91822 3.95367 4.18130 4.21681 4.27625 4.34762 4.39994 4.41663 4.43233 4.51703 4.57057 4.80092 4.83498 4.85215 4.91977 5.01288 5.06376 5.09224 5.21234 5.24188 5.27788 5.58189 5.63832 5.87557 6.05344 6.25815 6.55791 6.75017 6.81258 6.84017 6.94726 7.09521 8.36570 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.037433 B = 0.001781 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.832221 B =15715.285992 C =15939.650690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 H 0.099 0.901 4 C -0.098 4.098 5 C 0.071 3.929 6 O -0.596 6.596 7 S -0.263 6.263 8 C -0.111 4.111 9 C 0.137 3.863 10 H 0.097 0.903 11 O -0.560 6.560 12 C 0.035 3.965 13 O -0.332 6.332 14 C 0.000 4.000 15 C -0.164 4.164 16 C -0.207 4.207 17 C 0.054 3.946 18 C -0.499 4.499 19 H 0.077 0.923 20 C 0.033 3.967 21 N -0.831 5.831 22 Si 0.982 3.018 23 H -0.261 1.261 24 H -0.270 1.270 25 H -0.259 1.259 26 C -0.153 4.153 27 C -0.135 4.135 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.397 0.603 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.386 0.614 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.132 0.868 42 H 0.107 0.893 43 H 0.287 0.713 44 H 0.109 0.891 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.061 -2.068 -23.522 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 H 0.117 0.883 4 C -0.136 4.136 5 C -0.007 4.007 6 O -0.404 6.404 7 S -0.035 6.035 8 C -0.259 4.259 9 C 0.076 3.924 10 H 0.115 0.885 11 O -0.367 6.367 12 C -0.043 4.043 13 O -0.248 6.248 14 C -0.043 4.043 15 C -0.183 4.183 16 C -0.227 4.227 17 C 0.051 3.949 18 C -0.529 4.529 19 H 0.095 0.905 20 C -0.181 4.181 21 N -0.458 5.458 22 Si 0.803 3.197 23 H -0.186 1.186 24 H -0.194 1.194 25 H -0.183 1.183 26 C -0.173 4.173 27 C -0.154 4.154 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.247 0.753 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.236 0.764 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.149 0.851 42 H 0.125 0.875 43 H 0.098 0.902 44 H 0.127 0.873 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.150 -3.494 -23.413 23.700 hybrid contribution -0.671 1.803 0.954 2.148 sum -1.820 -1.691 -22.459 22.596 Atomic orbital electron populations 1.22064 0.91860 1.03308 1.03248 1.23148 0.99777 1.01719 0.93387 0.88251 1.21307 0.94732 1.01353 0.96217 1.22299 0.94672 0.96385 0.87328 1.86385 1.29200 1.79049 1.45804 1.87420 1.75704 1.39075 1.01339 1.24000 1.05591 1.01868 0.94466 1.21426 0.99149 0.82547 0.89232 0.88493 1.86649 1.26421 1.27863 1.95730 1.23466 0.99421 0.98504 0.82861 1.85872 1.72463 1.52941 1.13480 1.18665 1.03791 0.95920 0.85973 1.20708 1.02070 0.96533 0.98941 1.20807 1.07824 1.01845 0.92180 1.17967 0.92004 0.91631 0.93256 1.19694 1.08934 1.27031 0.97231 0.90464 1.26747 0.93842 0.93032 1.04492 1.69885 1.06570 1.36354 1.33012 0.85254 0.78913 0.79714 0.75827 1.18567 1.19412 1.18307 1.20896 1.03347 0.96178 0.96845 1.20011 1.03254 1.01208 0.90899 0.91736 0.91845 0.90207 0.91589 0.88905 0.92348 0.93243 0.75269 0.87651 0.87443 0.76442 0.90985 0.91053 0.85066 0.87485 0.90213 0.87326 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.10 71.98 0.66 -0.82 16 2 C -0.05 -0.63 2.82 30.59 0.09 -0.54 16 3 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.10 -1.30 5.05 30.59 0.15 -1.14 16 5 C 0.07 0.98 6.87 71.98 0.49 1.48 16 6 O -0.60 -9.03 13.66 -148.98 -2.04 -11.07 16 7 S -0.26 -4.73 19.60 -56.49 -1.11 -5.84 16 8 C -0.11 -1.74 5.33 71.98 0.38 -1.35 16 9 C 0.14 3.11 3.30 30.59 0.10 3.21 16 10 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 11 O -0.56 -14.22 12.90 -144.32 -1.86 -16.08 16 12 C 0.03 0.93 4.36 71.98 0.31 1.25 16 13 O -0.33 -12.94 10.09 -85.17 -0.86 -13.80 16 14 C 0.00 0.02 6.71 22.79 0.15 0.17 16 15 C -0.16 -6.98 8.96 22.11 0.20 -6.78 16 16 C -0.21 -9.96 9.74 22.48 0.22 -9.74 16 17 C 0.05 2.91 5.57 -21.28 -0.12 2.79 16 18 C -0.50 -26.92 9.04 23.40 0.21 -26.71 16 19 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 20 C 0.03 1.67 5.13 85.23 0.44 2.10 16 21 N -0.83 -44.06 10.96 21.82 0.24 -43.82 16 22 Si 0.98 38.30 29.59 68.60 2.03 40.33 16 23 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 24 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 25 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 26 C -0.15 -8.27 8.64 22.48 0.19 -8.07 16 27 C -0.13 -6.67 9.92 22.11 0.22 -6.45 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.60 6.92 -2.39 -0.02 0.58 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.05 0.79 7.13 -2.38 -0.02 0.77 16 35 H 0.40 2.61 9.12 -74.06 -0.68 1.93 16 36 H 0.11 1.28 7.14 -2.39 -0.02 1.27 16 37 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.39 7.01 9.04 -74.06 -0.67 6.34 16 39 H 0.07 1.77 7.63 -2.38 -0.02 1.75 16 40 H 0.07 1.69 7.66 -2.39 -0.02 1.67 16 41 H 0.13 4.46 6.27 -2.91 -0.02 4.44 16 42 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 43 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 44 H 0.11 6.11 6.16 -2.91 -0.02 6.09 16 45 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -67.92 383.23 -0.23 -68.15 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: -0.34 Total: 32.74 kcal Atomic # 6 Polarization: -54.32 SS G_CDS: 3.70 Total: -50.61 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.24 Total: -43.82 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -4.76 Total: -40.95 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Atomic # 16 Polarization: -4.73 SS G_CDS: -1.11 Total: -5.84 kcal Total: -67.92 -0.23 -68.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594891304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.932 kcal (2) G-P(sol) polarization free energy of solvation -67.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds