Wall clock time and date at job start Sat Apr 11 2020 01:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76201 * 102.99726 * 2 1 4 4 C 1.38956 * 120.10677 * 269.97641 * 3 2 1 5 5 F 1.35100 * 120.02495 * 0.05200 * 4 3 2 6 6 C 1.38365 * 119.95109 * 180.02562 * 4 3 2 7 7 C 1.38319 * 120.17014 * 0.02562 * 6 4 3 8 8 C 1.38226 * 120.21247 * 359.71684 * 7 6 4 9 9 C 1.38695 * 120.04934 * 0.55300 * 8 7 6 10 10 N 1.40204 * 120.08885 * 179.72081 * 9 8 7 11 11 C 1.34779 * 119.99317 * 24.69171 * 10 9 8 12 12 O 1.21590 * 120.00098 * 5.92769 * 11 10 9 13 13 N 1.34782 * 119.99507 * 185.92440 * 11 10 9 14 14 C 1.46502 * 119.99830 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46998 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.46934 * 299.99905 * 15 14 13 17 17 C 1.53001 * 109.47272 * 59.99937 * 15 14 13 18 18 C 1.50704 * 109.46988 * 179.97438 * 15 14 13 19 19 H 1.07996 * 120.00022 * 4.19194 * 18 15 14 20 20 C 1.37870 * 119.99896 * 184.19629 * 18 15 14 21 21 N 1.31520 * 120.00153 * 4.70170 * 20 18 15 22 22 Si 1.86798 * 120.00059 * 184.70072 * 20 18 15 23 23 H 1.48503 * 109.47312 * 94.99910 * 22 20 18 24 24 H 1.48503 * 109.47296 * 215.00015 * 22 20 18 25 25 H 1.48502 * 109.47191 * 335.00239 * 22 20 18 26 26 H 1.09000 * 109.46993 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47509 * 299.99761 * 1 2 3 28 28 H 1.08994 * 109.47787 * 60.00491 * 1 2 3 29 29 H 1.08002 * 119.91188 * 179.97438 * 6 4 3 30 30 H 1.07994 * 119.88723 * 180.02562 * 7 6 4 31 31 H 1.08004 * 119.97541 * 180.27896 * 8 7 6 32 32 H 0.96993 * 120.00366 * 204.96852 * 10 9 8 33 33 H 0.96996 * 119.99802 * 0.02562 * 13 11 10 34 34 H 1.09003 * 109.46584 * 299.99943 * 14 13 11 35 35 H 1.09000 * 109.46895 * 60.00075 * 14 13 11 36 36 H 1.08992 * 109.46970 * 55.01390 * 16 15 14 37 37 H 1.09000 * 109.46434 * 175.00919 * 16 15 14 38 38 H 1.08996 * 109.46751 * 295.00664 * 16 15 14 39 39 H 1.09008 * 109.46942 * 59.99687 * 17 15 14 40 40 H 1.08994 * 109.47379 * 179.97438 * 17 15 14 41 41 H 1.08998 * 109.47058 * 300.00382 * 17 15 14 42 42 H 0.97003 * 119.99997 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 2.3675 2.3959 -1.2021 5 9 2.2156 1.7405 -2.3737 6 6 2.6792 3.7440 -1.1983 7 6 2.8354 4.4180 -0.0006 8 6 2.6753 3.7506 1.1992 9 6 2.3684 2.3980 1.2059 10 7 2.2116 1.7189 2.4224 11 6 1.8633 2.3981 3.5332 12 8 1.5801 3.5783 3.4604 13 7 1.8288 1.7689 4.7247 14 6 1.4496 2.5070 5.9320 15 6 1.4899 1.5667 7.1383 16 6 0.5106 0.4120 6.9178 17 6 2.9055 1.0102 7.3041 18 6 1.1005 2.3261 8.3804 19 1 0.7842 3.3561 8.3067 20 6 1.1482 1.7060 9.6108 21 7 1.6208 0.4829 9.7130 22 14 0.5417 2.6030 11.1330 23 1 -0.8718 2.2314 11.3962 24 1 1.3790 2.2219 12.2987 25 1 0.6356 4.0688 10.9141 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 2.8017 4.2711 -2.1330 30 1 3.0783 5.4703 -0.0030 31 1 2.7937 4.2817 2.1321 32 1 2.3577 0.7610 2.4655 33 1 2.0550 0.8275 4.7827 34 1 2.1471 3.3299 6.0888 35 1 0.4410 2.9030 5.8140 36 1 0.7387 -0.0825 5.9736 37 1 0.6032 -0.3038 7.7345 38 1 -0.5076 0.7999 6.8882 39 1 3.6032 1.8329 7.4612 40 1 2.9343 0.3407 8.1637 41 1 3.1876 0.4612 6.4058 42 1 1.6547 0.0467 10.5788 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596972624.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:36 Heat of formation + Delta-G solvation = -45.964957 kcal Electronic energy + Delta-G solvation = -25302.881931 eV Core-core repulsion = 21516.923573 eV Total energy + Delta-G solvation = -3785.958358 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.11561 -40.65126 -38.63895 -36.58263 -34.73166 -33.46411 -31.12348 -30.89313 -29.43163 -29.01709 -25.79923 -25.71831 -25.01524 -23.37133 -22.95923 -20.77920 -18.96620 -18.68415 -18.21488 -17.45975 -16.47250 -15.93442 -15.87152 -15.76183 -15.42426 -15.13473 -14.77581 -14.58398 -14.13428 -13.80931 -13.69701 -13.50777 -13.30949 -13.00306 -12.94696 -12.69218 -12.27035 -12.24522 -11.82181 -11.53938 -11.23392 -10.93776 -10.75786 -10.70632 -10.60984 -10.43321 -10.22611 -9.90262 -9.69323 -9.42615 -8.99801 -8.85072 -8.66823 -8.43786 -8.16423 -8.04310 -6.05606 -4.17667 0.57987 1.00852 1.46318 2.34160 2.64502 3.11226 3.24854 3.32717 3.36436 3.56439 4.00807 4.29947 4.41710 4.62698 4.74396 4.94240 4.96517 5.09499 5.16267 5.19224 5.52380 5.52717 5.79024 5.88877 6.09176 6.17142 6.24376 6.27346 6.41591 6.66276 6.73641 6.74867 6.78515 6.90910 6.95021 7.07363 7.29371 7.48985 7.64272 7.89463 8.06553 8.17248 8.34917 8.65493 8.83331 9.48948 10.93710 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.024460 B = 0.002705 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.434205 B =10348.326554 C =11045.124899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.130 6.130 3 C -0.210 4.210 4 C 0.164 3.836 5 F -0.125 7.125 6 C -0.192 4.192 7 C -0.043 4.043 8 C -0.153 4.153 9 C 0.259 3.741 10 N -0.683 5.683 11 C 0.696 3.304 12 O -0.577 6.577 13 N -0.721 5.721 14 C 0.148 3.852 15 C 0.056 3.944 16 C -0.126 4.126 17 C -0.137 4.137 18 C -0.508 4.508 19 H 0.058 0.942 20 C 0.067 3.933 21 N -0.884 5.884 22 Si 0.894 3.106 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.162 0.838 32 H 0.414 0.586 33 H 0.398 0.602 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.008 0.992 37 H 0.072 0.928 38 H 0.030 0.970 39 H 0.026 0.974 40 H 0.100 0.900 41 H 0.002 0.998 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 0.212 -19.756 19.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.101 5.899 3 C -0.326 4.326 4 C 0.141 3.859 5 F -0.103 7.103 6 C -0.214 4.214 7 C -0.062 4.062 8 C -0.175 4.175 9 C 0.156 3.844 10 N -0.329 5.329 11 C 0.396 3.604 12 O -0.455 6.455 13 N -0.374 5.374 14 C 0.025 3.975 15 C 0.055 3.945 16 C -0.184 4.184 17 C -0.195 4.195 18 C -0.546 4.546 19 H 0.077 0.923 20 C -0.134 4.134 21 N -0.523 5.523 22 Si 0.722 3.278 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.198 1.198 26 H 0.124 0.876 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.156 0.844 30 H 0.158 0.842 31 H 0.180 0.820 32 H 0.253 0.747 33 H 0.233 0.767 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.027 0.973 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.045 0.955 40 H 0.118 0.882 41 H 0.021 0.979 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.031 0.131 -19.522 19.627 hybrid contribution -1.031 0.479 0.644 1.306 sum 1.000 0.610 -18.878 18.914 Atomic orbital electron populations 1.23632 0.94775 1.06598 1.05521 1.85348 1.06885 1.00597 1.97094 1.21260 1.18521 0.99514 0.93282 1.17379 0.98117 0.90114 0.80314 1.91532 1.92614 1.81226 1.44966 1.21060 1.07719 0.92436 1.00157 1.21104 0.94116 1.00152 0.90791 1.21654 1.02071 0.93093 1.00672 1.17335 0.91750 0.91571 0.83716 1.43142 1.71245 1.12390 1.06164 1.16070 0.78613 0.85277 0.80442 1.90865 1.55316 1.14109 1.85166 1.45616 1.71292 1.14438 1.06084 1.21719 0.98994 0.95046 0.81715 1.18382 0.93376 0.91987 0.90720 1.21785 0.98421 0.99843 0.98368 1.21970 0.96442 1.00585 1.00477 1.20969 1.44883 0.98195 0.90579 0.92329 1.24876 0.94748 0.95004 0.98784 1.69775 1.45268 1.12870 1.24375 0.86546 0.78724 0.80083 0.82461 1.20743 1.21256 1.19837 0.87600 0.90169 0.90305 0.84406 0.84248 0.82039 0.74705 0.76679 0.92403 0.92615 0.97272 0.90896 0.95044 0.95530 0.88157 0.97909 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 10.72 101.05 1.08 -0.20 16 2 S -0.13 -1.46 20.64 -107.50 -2.22 -3.68 16 3 C -0.21 -2.61 5.72 -38.88 -0.22 -2.83 16 4 C 0.16 1.92 7.27 -39.27 -0.29 1.63 16 5 F -0.13 -1.49 16.75 2.25 0.04 -1.45 16 6 C -0.19 -1.91 10.02 -39.50 -0.40 -2.30 16 7 C -0.04 -0.43 10.04 -39.56 -0.40 -0.83 16 8 C -0.15 -1.99 8.72 -39.42 -0.34 -2.33 16 9 C 0.26 3.44 6.44 -83.43 -0.54 2.91 16 10 N -0.68 -9.14 5.18 -14.07 -0.07 -9.21 16 11 C 0.70 11.44 8.37 -86.91 -0.73 10.71 16 12 O -0.58 -11.10 13.52 5.29 0.07 -11.03 16 13 N -0.72 -12.00 4.92 -65.22 -0.32 -12.32 16 14 C 0.15 2.96 4.50 -4.04 -0.02 2.94 16 15 C 0.06 1.24 0.51 -155.66 -0.08 1.16 16 16 C -0.13 -2.70 8.13 37.16 0.30 -2.39 16 17 C -0.14 -3.00 8.02 37.16 0.30 -2.70 16 18 C -0.51 -12.87 8.01 -34.44 -0.28 -13.15 16 19 H 0.06 1.50 7.75 -52.49 -0.41 1.09 16 20 C 0.07 1.72 5.16 -17.82 -0.09 1.63 16 21 N -0.88 -22.99 9.45 55.43 0.52 -22.46 16 22 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H 0.11 0.80 8.14 -51.92 -0.42 0.38 16 27 H 0.08 0.81 8.14 -51.92 -0.42 0.38 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.16 2.38 5.79 -52.48 -0.30 2.08 16 32 H 0.41 4.77 7.67 -40.82 -0.31 4.45 16 33 H 0.40 5.96 6.18 -40.82 -0.25 5.71 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.01 0.15 6.73 -51.93 -0.35 -0.19 16 37 H 0.07 1.72 6.72 -51.93 -0.35 1.37 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 40 H 0.10 2.46 5.59 -51.93 -0.29 2.17 16 41 H 0.00 0.04 6.86 -51.93 -0.36 -0.32 16 42 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 357.64 15.07 5.39 5.39 Total: -1.00 -27.53 357.64 -8.86 -36.40 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -5.56 Total: 8.87 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -1.69 Total: -5.76 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.13 Total: -43.99 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.07 Total: -11.03 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.22 Total: -3.68 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.53 -8.86 -36.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596972624.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.568 kcal (2) G-P(sol) polarization free energy of solvation -27.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds