Wall clock time and date at job start Sat Apr 11 2020 01:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46611 * 2 1 4 4 N 1.28432 * 125.18805 * 275.29890 * 3 2 1 5 5 C 1.30837 * 110.98101 * 180.26318 * 4 3 2 6 6 C 1.39808 * 107.87631 * 359.73369 * 5 4 3 7 7 Cl 1.73603 * 127.33549 * 180.02562 * 6 5 4 8 8 C 1.36750 * 125.18830 * 95.10733 * 3 2 1 9 9 C 1.47037 * 126.90293 * 0.02562 * 8 3 2 10 10 O 1.21639 * 119.99891 * 266.96166 * 9 8 3 11 11 N 1.34773 * 120.00062 * 86.96420 * 9 8 3 12 12 C 1.46500 * 119.99989 * 174.79781 * 11 9 8 13 13 C 1.53043 * 109.45819 * 275.06626 * 12 11 9 14 14 C 1.53192 * 109.31319 * 178.61562 * 13 12 11 15 15 N 1.46932 * 108.77596 * 54.63468 * 14 13 12 16 16 C 1.36933 * 120.62963 * 126.41597 * 15 14 13 17 17 H 1.07994 * 120.00179 * 327.79175 * 16 15 14 18 18 C 1.38814 * 119.99751 * 147.79720 * 16 15 14 19 19 N 1.31623 * 119.99582 * 167.74553 * 18 16 15 20 20 Si 1.86797 * 119.99999 * 347.74090 * 18 16 15 21 21 H 1.48503 * 109.47231 * 85.85098 * 20 18 16 22 22 H 1.48500 * 109.46780 * 205.84684 * 20 18 16 23 23 H 1.48500 * 109.47335 * 325.84648 * 20 18 16 24 24 C 1.46929 * 118.73474 * 306.39224 * 15 14 13 25 25 C 1.53038 * 109.45860 * 155.00043 * 12 11 9 26 26 H 1.08996 * 109.47266 * 299.99985 * 1 2 3 27 27 H 1.09002 * 109.47200 * 60.00601 * 1 2 3 28 28 H 1.09001 * 109.46977 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47266 * 240.00015 * 2 1 3 30 30 H 1.09002 * 109.47200 * 119.99399 * 2 1 3 31 31 H 1.08003 * 126.06004 * 179.75788 * 5 4 3 32 32 H 0.97003 * 119.99852 * 354.79730 * 11 9 8 33 33 H 1.08991 * 109.44871 * 35.02983 * 12 11 9 34 34 H 1.09008 * 109.49755 * 298.56617 * 13 12 11 35 35 H 1.08993 * 109.49678 * 58.66437 * 13 12 11 36 36 H 1.09006 * 109.58257 * 294.84862 * 14 13 12 37 37 H 1.08992 * 109.70538 * 174.49262 * 14 13 12 38 38 H 0.97003 * 119.99375 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.58940 * 293.81857 * 24 15 14 40 40 H 1.09000 * 109.69732 * 173.46490 * 24 15 14 41 41 H 1.09004 * 109.49917 * 301.33266 * 25 12 11 42 42 H 1.08996 * 109.50256 * 61.43532 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.1735 2.1114 -1.0451 5 6 2.6294 3.2955 -0.7259 6 6 2.7787 3.3376 0.6635 7 17 3.3483 4.6687 1.6213 8 6 2.3747 2.0911 1.1132 9 6 2.3419 1.6231 2.5067 10 8 1.3595 1.8280 3.1941 11 7 3.4004 0.9673 3.0224 12 6 3.4153 0.6015 4.4409 13 6 3.9292 1.7831 5.2667 14 6 3.9108 1.4091 6.7522 15 7 4.6736 0.1669 6.9366 16 6 5.6937 0.1035 7.8478 17 1 6.2902 0.9801 8.0525 18 6 5.9613 -1.0878 8.5082 19 7 7.0758 -1.2235 9.1951 20 14 4.7395 -2.4982 8.4222 21 1 4.9978 -3.3032 7.2014 22 1 4.8909 -3.3581 9.6234 23 1 3.3584 -1.9545 8.3737 24 6 4.3204 -1.0059 6.1251 25 6 4.3343 -0.6048 4.6466 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 2.8507 4.0982 -1.4138 32 1 4.1523 0.7375 2.4542 33 1 2.4049 0.3471 4.7607 34 1 4.9488 2.0223 4.9643 35 1 3.2877 2.6487 5.1015 36 1 2.8817 1.2579 7.0781 37 1 4.3659 2.2077 7.3378 38 1 7.2629 -2.0561 9.6563 39 1 3.3248 -1.3541 6.3999 40 1 5.0456 -1.8018 6.2946 41 1 3.9811 -1.4389 4.0401 42 1 5.3500 -0.3432 4.3502 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598683323.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:37 Heat of formation + Delta-G solvation = 38.489934 kcal Electronic energy + Delta-G solvation = -25918.334611 eV Core-core repulsion = 22153.914747 eV Total energy + Delta-G solvation = -3764.419864 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.74837 -40.99957 -39.17322 -37.69645 -36.18608 -35.58991 -34.16569 -32.54836 -32.01044 -31.24963 -30.83392 -27.05378 -25.35176 -24.74433 -24.23524 -23.20423 -22.66885 -21.40493 -20.93049 -19.43728 -18.70974 -17.83187 -17.34993 -17.15300 -16.67283 -16.50340 -15.95574 -15.63225 -15.54810 -15.37952 -15.10947 -14.75881 -14.67416 -14.49112 -14.16699 -13.94162 -13.85377 -13.50502 -13.14779 -12.90839 -12.80434 -12.62775 -12.60145 -12.37019 -12.26127 -12.00459 -11.85458 -11.62624 -11.58283 -11.49682 -11.31304 -10.70783 -10.42521 -10.24376 -9.89500 -8.89626 -8.14851 -5.56249 0.29750 0.65990 1.10363 1.29428 1.36958 1.43892 1.52376 1.58826 2.03650 2.41915 3.12027 3.25117 3.34770 3.41920 3.73137 3.84938 3.88422 3.93485 4.11359 4.18020 4.19146 4.26882 4.29760 4.47164 4.59296 4.62395 4.65414 4.72572 4.81393 4.90594 4.97460 5.05799 5.08512 5.11164 5.15649 5.27861 5.39996 5.51677 5.90396 6.14404 6.25309 6.77463 6.87794 6.91887 7.60062 8.01585 9.05119 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.003321 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.847752 B = 8429.141168 C = 9372.742654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.105 3.895 3 N -0.257 5.257 4 N -0.276 5.276 5 C 0.025 3.975 6 C -0.127 4.127 7 Cl -0.023 7.023 8 C -0.024 4.024 9 C 0.597 3.403 10 O -0.549 6.549 11 N -0.692 5.692 12 C 0.160 3.840 13 C -0.131 4.131 14 C 0.148 3.852 15 N -0.620 5.620 16 C -0.251 4.251 17 H 0.048 0.952 18 C -0.035 4.035 19 N -0.963 5.963 20 Si 0.957 3.043 21 H -0.261 1.261 22 H -0.315 1.315 23 H -0.263 1.263 24 C 0.115 3.885 25 C -0.127 4.127 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.134 0.866 30 H 0.108 0.892 31 H 0.223 0.777 32 H 0.415 0.585 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.032 0.968 37 H 0.056 0.944 38 H 0.262 0.738 39 H 0.036 0.964 40 H 0.062 0.938 41 H 0.096 0.904 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.439 3.260 -24.682 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.013 4.013 3 N -0.047 5.047 4 N -0.106 5.106 5 C -0.152 4.152 6 C -0.165 4.165 7 Cl 0.006 6.994 8 C -0.155 4.155 9 C 0.380 3.620 10 O -0.425 6.425 11 N -0.343 5.343 12 C 0.056 3.944 13 C -0.171 4.171 14 C 0.023 3.977 15 N -0.345 5.345 16 C -0.380 4.380 17 H 0.066 0.934 18 C -0.230 4.230 19 N -0.609 5.609 20 Si 0.786 3.214 21 H -0.187 1.187 22 H -0.244 1.244 23 H -0.188 1.188 24 C -0.010 4.010 25 C -0.166 4.166 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.128 0.872 29 H 0.152 0.848 30 H 0.127 0.873 31 H 0.239 0.761 32 H 0.251 0.749 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.114 0.886 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.386 2.605 -24.911 27.942 hybrid contribution 0.557 0.162 1.226 1.357 sum -11.829 2.767 -23.685 26.619 Atomic orbital electron populations 1.22154 0.92722 1.05096 1.02470 1.22491 0.96827 0.74756 1.07224 1.46084 1.44583 1.13001 1.00986 1.73234 1.19274 1.04579 1.13524 1.23991 1.02586 0.96144 0.92461 1.21467 1.11159 0.90397 0.93465 1.98372 1.87218 1.43070 1.70759 1.21178 1.10308 0.94380 0.89644 1.16953 0.83069 0.77639 0.84344 1.90863 1.33882 1.56307 1.61461 1.46024 1.20436 1.56431 1.11371 1.20841 1.00203 0.94568 0.78787 1.22228 1.01217 0.97649 0.95961 1.20994 0.94405 0.88036 0.94295 1.44464 1.37558 1.09673 1.42832 1.18830 1.06288 0.97717 1.15207 0.93416 1.26084 0.98660 1.01320 0.96916 1.69915 1.25903 1.27411 1.37703 0.85841 0.80437 0.79130 0.76029 1.18658 1.24398 1.18772 1.21505 0.98447 0.90289 0.90766 1.22170 1.00023 0.97325 0.97114 0.93728 0.91470 0.87248 0.84832 0.87334 0.76090 0.74857 0.90135 0.91808 0.91714 0.95023 0.92497 0.92895 0.94585 0.91985 0.88575 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 10.24 71.98 0.74 -1.22 16 2 C 0.11 1.23 6.91 86.38 0.60 1.83 16 3 N -0.26 -4.71 3.35 -334.58 -1.12 -5.83 16 4 N -0.28 -5.17 11.89 -57.06 -0.68 -5.85 16 5 C 0.03 0.44 12.04 85.22 1.03 1.47 16 6 C -0.13 -2.73 6.89 22.72 0.16 -2.57 16 7 Cl -0.02 -0.50 29.24 -2.72 -0.08 -0.58 16 8 C -0.02 -0.54 6.72 40.76 0.27 -0.27 16 9 C 0.60 15.22 6.88 86.55 0.60 15.82 16 10 O -0.55 -18.17 16.74 -4.15 -0.07 -18.24 16 11 N -0.69 -15.41 5.07 -446.06 -2.26 -17.67 16 12 C 0.16 4.42 2.46 45.02 0.11 4.53 16 13 C -0.13 -4.14 5.65 30.67 0.17 -3.97 16 14 C 0.15 5.74 6.52 86.36 0.56 6.30 16 15 N -0.62 -28.18 2.74 -699.08 -1.92 -30.09 16 16 C -0.25 -14.01 10.06 84.03 0.85 -13.16 16 17 H 0.05 2.96 8.06 -2.91 -0.02 2.93 16 18 C -0.04 -2.03 5.35 84.86 0.45 -1.57 16 19 N -0.96 -59.98 13.97 21.65 0.30 -59.68 16 20 Si 0.96 45.22 24.24 68.60 1.66 46.88 16 21 H -0.26 -11.11 6.41 99.48 0.64 -10.47 16 22 H -0.31 -15.33 7.11 99.48 0.71 -14.63 16 23 H -0.26 -11.98 6.58 99.48 0.65 -11.32 16 24 C 0.12 4.45 4.15 86.36 0.36 4.80 16 25 C -0.13 -3.57 5.55 30.67 0.17 -3.40 16 26 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.11 0.73 8.14 -2.39 -0.02 0.72 16 29 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.11 1.11 7.65 -2.39 -0.02 1.09 16 31 H 0.22 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.41 7.17 8.59 -92.71 -0.80 6.38 16 33 H 0.08 2.44 7.51 -2.39 -0.02 2.42 16 34 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.06 2.28 7.93 -2.39 -0.02 2.26 16 38 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.04 1.36 6.91 -2.39 -0.02 1.34 16 40 H 0.06 2.62 4.39 -2.39 -0.01 2.61 16 41 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -72.33 357.42 2.02 -70.30 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.13 Total: 12.17 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 6.06 Total: 8.59 kcal Atomic # 7 Polarization: -113.45 SS G_CDS: -5.68 Total: -119.13 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.07 Total: -18.24 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.66 Total: 46.88 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.58 kcal Total: -72.33 2.02 -70.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598683323.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.793 kcal (2) G-P(sol) polarization free energy of solvation -72.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds