Wall clock time and date at job start Sat Apr 11 2020 01:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47246 * 2 1 4 4 C 1.46499 * 120.00376 * 274.94476 * 3 2 1 5 5 C 1.50702 * 109.46989 * 275.00176 * 4 3 2 6 6 H 1.08006 * 119.99967 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99985 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99979 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99795 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46783 * 90.00124 * 9 7 5 11 11 H 1.48496 * 109.46956 * 209.99997 * 9 7 5 12 12 H 1.48502 * 109.47199 * 330.00029 * 9 7 5 13 13 S 1.65601 * 120.00010 * 94.94233 * 3 2 1 14 14 O 1.42103 * 106.40458 * 340.50433 * 13 3 2 15 15 O 1.42103 * 106.40369 * 207.59022 * 13 3 2 16 16 N 1.65599 * 107.22119 * 94.04613 * 13 3 2 17 17 C 1.44574 * 118.64577 * 273.17344 * 16 13 3 18 18 C 1.54863 * 109.59654 * 270.74365 * 17 16 13 19 19 C 1.47090 * 110.32468 * 288.73205 * 18 17 16 20 20 C 1.52569 * 114.20622 * 62.88113 * 19 18 17 21 21 F 1.39900 * 109.49331 * 34.87948 * 20 19 18 22 22 F 1.39903 * 109.49041 * 154.94174 * 20 19 18 23 23 C 1.51036 * 109.27983 * 274.77863 * 20 19 18 24 24 C 1.47609 * 118.63947 * 93.18801 * 16 13 3 25 25 H 1.08999 * 109.47243 * 175.90889 * 1 2 3 26 26 H 1.08996 * 109.47253 * 295.91286 * 1 2 3 27 27 H 1.09004 * 109.47014 * 55.90976 * 1 2 3 28 28 H 1.08993 * 109.47197 * 239.99896 * 2 1 3 29 29 H 1.08999 * 109.47089 * 119.99881 * 2 1 3 30 30 H 1.09007 * 109.46861 * 34.99498 * 4 3 2 31 31 H 1.08995 * 109.47703 * 154.99677 * 4 3 2 32 32 H 0.97005 * 120.00093 * 180.02562 * 8 7 5 33 33 H 1.08993 * 109.44999 * 150.70711 * 17 16 13 34 34 H 1.09002 * 109.44998 * 30.78330 * 17 16 13 35 35 H 1.08999 * 109.32869 * 168.46711 * 18 17 16 36 36 H 1.09003 * 109.32645 * 48.99559 * 18 17 16 37 37 H 1.08998 * 108.51446 * 184.05136 * 19 18 17 38 38 H 1.08991 * 108.51474 * 301.70767 * 19 18 17 39 39 H 1.09000 * 109.44062 * 331.90489 * 23 20 19 40 40 H 1.08995 * 109.42022 * 212.21258 * 23 20 19 41 41 H 1.08999 * 108.94558 * 258.53085 * 24 16 13 42 42 H 1.08995 * 108.95013 * 17.16419 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1595 2.1083 -1.2639 5 6 3.4966 1.7882 -1.8810 6 1 4.1737 1.1111 -1.3814 7 6 3.8555 2.3596 -3.0834 8 7 3.0312 3.1844 -3.6915 9 14 5.5132 1.9633 -3.8479 10 1 5.3790 0.7794 -4.7344 11 1 5.9823 3.1264 -4.6430 12 1 6.4958 1.6690 -2.7742 13 16 2.4109 2.1206 1.4288 14 8 1.7599 1.3833 2.4544 15 8 2.2127 3.5133 1.2276 16 7 4.0368 1.9083 1.6603 17 6 4.4917 0.7041 2.3186 18 6 4.5407 0.9357 3.8490 19 6 5.6496 1.8385 4.1939 20 6 5.5221 3.2397 3.6039 21 9 4.1740 3.6120 3.5721 22 9 6.2383 4.1456 4.3937 23 6 6.0829 3.2433 2.2015 24 6 4.9617 2.9564 1.1863 25 1 -0.3634 -1.0250 -0.0733 26 1 -0.3633 0.4491 0.9243 27 1 -0.3633 0.5760 -0.8511 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3636 1.8091 -1.9460 31 1 2.0932 3.1799 -1.0761 32 1 3.2835 3.5861 -4.5376 33 1 5.4879 0.4477 1.9582 34 1 3.8046 -0.1125 2.0968 35 1 4.6829 -0.0197 4.3541 36 1 3.6001 1.3779 4.1773 37 1 5.7020 1.9235 5.2793 38 1 6.5797 1.3962 3.8372 39 1 6.8525 2.4760 2.1166 40 1 6.5220 4.2180 1.9893 41 1 5.4095 2.6344 0.2461 42 1 4.3986 3.8733 1.0125 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599398949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:48 Heat of formation + Delta-G solvation = -174.892484 kcal Electronic energy + Delta-G solvation = -29061.842153 eV Core-core repulsion = 24839.523853 eV Total energy + Delta-G solvation = -4222.318300 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.89510 -46.84504 -37.95609 -36.69290 -36.01409 -35.12897 -33.32460 -32.73670 -32.21978 -29.94341 -26.64636 -26.18444 -25.22383 -23.14239 -21.71192 -21.30670 -20.71709 -18.38346 -17.55680 -17.03083 -16.91861 -16.74812 -16.46779 -16.29111 -15.57820 -14.95059 -14.44961 -14.25594 -14.10099 -13.94537 -13.42365 -13.33850 -13.18657 -13.09250 -12.87374 -12.69296 -12.49638 -12.16589 -12.09080 -11.94785 -11.67516 -11.60249 -11.52560 -11.30706 -11.13515 -11.05155 -10.98220 -10.89712 -10.72518 -10.50027 -10.47436 -10.40060 -10.02653 -9.79290 -8.70285 -8.52825 -8.05235 -6.14158 -4.21011 1.29088 3.20351 3.27480 3.29037 3.45658 3.81095 4.07444 4.21905 4.32153 4.32201 4.44081 4.81524 4.88378 5.06942 5.09025 5.19777 5.25962 5.36755 5.47692 5.58450 5.64094 5.68313 5.74397 5.77988 5.81015 5.85404 5.99171 6.09211 6.16502 6.27775 6.30007 6.38530 6.65668 6.67517 6.97060 7.35133 7.44605 7.65169 7.83333 8.13067 8.84163 9.44784 10.93785 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.012828 B = 0.006370 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.266615 B = 4394.777453 C = 5638.576005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.129 3.871 3 N -0.994 5.994 4 C 0.245 3.755 5 C -0.538 4.538 6 H 0.063 0.937 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.785 3.215 14 O -0.995 6.995 15 O -0.975 6.975 16 N -0.997 5.997 17 C 0.128 3.872 18 C -0.145 4.145 19 C -0.153 4.153 20 C 0.296 3.704 21 F -0.193 7.193 22 F -0.207 7.207 23 C -0.172 4.172 24 C 0.123 3.877 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.264 0.736 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.546 -5.812 11.849 14.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.003 3.997 3 N -0.835 5.835 4 C 0.123 3.877 5 C -0.578 4.578 6 H 0.081 0.919 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 S 2.794 3.206 14 O -0.979 6.979 15 O -0.959 6.959 16 N -0.834 5.834 17 C 0.001 3.999 18 C -0.184 4.184 19 C -0.191 4.191 20 C 0.259 3.741 21 F -0.174 7.174 22 F -0.188 7.188 23 C -0.212 4.212 24 C -0.002 4.002 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.939 -5.190 12.260 14.200 hybrid contribution 1.255 -0.267 -0.778 1.500 sum 6.194 -5.458 11.483 14.142 Atomic orbital electron populations 1.22214 0.96983 1.01471 1.02339 1.20992 0.93687 0.83036 1.02027 1.57824 1.78434 1.22897 1.24358 1.19179 0.97306 0.92159 0.79093 1.21548 1.02196 1.28001 1.06007 0.91899 1.24961 0.97180 0.94869 0.96901 1.69933 1.35996 1.29758 1.16978 0.86596 0.83997 0.77932 0.79409 1.20700 1.21155 1.19829 1.01867 0.72629 0.73332 0.72773 1.93517 1.73570 1.74154 1.56670 1.93549 1.84517 1.31622 1.86254 1.57597 1.26425 1.27193 1.72205 1.21138 1.01713 0.86393 0.90679 1.21283 0.99477 0.99869 0.97814 1.21399 1.02106 0.93020 1.02570 1.20481 0.74633 0.87487 0.91460 1.93009 1.34533 1.92725 1.97137 1.93001 1.78259 1.70504 1.76998 1.22887 1.00441 1.05560 0.92314 1.21525 0.91067 0.91826 0.95757 0.92291 0.92753 0.92009 0.90272 0.91902 0.94465 0.93320 0.92570 0.90295 0.90325 0.89628 0.89845 0.90063 0.89306 0.88648 0.88211 0.89337 0.87979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 10.24 37.16 0.38 -2.32 16 2 C 0.13 2.21 6.08 -4.04 -0.02 2.19 16 3 N -0.99 -20.29 2.82 -115.67 -0.33 -20.62 16 4 C 0.24 5.94 5.44 -5.19 -0.03 5.92 16 5 C -0.54 -13.45 9.38 -34.44 -0.32 -13.77 16 6 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -24.77 13.29 55.43 0.74 -24.04 16 9 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 S 2.78 56.21 5.59 -107.50 -0.60 55.61 16 14 O -1.00 -20.16 15.20 -57.17 -0.87 -21.03 16 15 O -0.98 -23.08 15.08 -57.17 -0.86 -23.94 16 16 N -1.00 -16.47 2.02 -113.31 -0.23 -16.70 16 17 C 0.13 1.64 5.25 -4.09 -0.02 1.62 16 18 C -0.15 -1.69 5.45 -28.59 -0.16 -1.85 16 19 C -0.15 -1.64 4.85 -29.79 -0.14 -1.78 16 20 C 0.30 4.02 2.06 -27.94 -0.06 3.97 16 21 F -0.19 -3.34 13.76 2.25 0.03 -3.31 16 22 F -0.21 -2.88 16.98 2.25 0.04 -2.85 16 23 C -0.17 -2.14 5.46 -27.22 -0.15 -2.29 16 24 C 0.12 1.98 5.75 -2.94 -0.02 1.96 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 28 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 29 H 0.06 0.95 7.10 -51.93 -0.37 0.58 16 30 H 0.04 0.95 8.06 -51.93 -0.42 0.53 16 31 H 0.05 1.31 6.97 -51.93 -0.36 0.95 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.08 0.83 8.06 -51.93 -0.42 0.41 16 34 H 0.08 0.98 7.36 -51.93 -0.38 0.60 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.20 6.76 -51.93 -0.35 0.85 16 37 H 0.08 0.79 8.11 -51.93 -0.42 0.37 16 38 H 0.09 0.73 7.35 -51.93 -0.38 0.35 16 39 H 0.09 0.93 7.31 -51.93 -0.38 0.55 16 40 H 0.10 1.14 8.07 -51.93 -0.42 0.72 16 41 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.10 1.88 6.61 -51.93 -0.34 1.53 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -31.18 347.69 -8.82 -40.00 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.32 Total: 1.56 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -0.64 Total: -4.79 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.18 Total: -61.35 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -1.73 Total: -44.97 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.07 Total: -6.16 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 56.21 SS G_CDS: -0.60 Total: 55.61 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.18 -8.82 -40.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599398949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.890 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds