Wall clock time and date at job start Sat Apr 11 2020 01:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47225 * 2 1 4 4 O 1.45195 * 109.47229 * 120.00926 * 2 1 3 5 5 C 1.34743 * 117.00202 * 149.99651 * 4 2 1 6 6 O 1.21506 * 120.00038 * 359.97438 * 5 4 2 7 7 C 1.47473 * 120.00181 * 179.97438 * 5 4 2 8 8 C 1.39798 * 120.08941 * 179.97438 * 7 5 4 9 9 C 1.37675 * 119.90951 * 180.02562 * 8 7 5 10 10 C 1.39049 * 120.08755 * 0.02562 * 9 8 7 11 11 O 1.35666 * 119.90763 * 179.70079 * 10 9 8 12 12 C 1.35640 * 118.00136 * 67.72582 * 11 10 9 13 13 C 1.39351 * 119.81779 * 6.01158 * 12 11 10 14 14 C 1.36417 * 120.17807 * 179.75814 * 13 12 11 15 15 C 1.40844 * 119.81787 * 0.51381 * 14 13 12 16 16 C 1.41193 * 120.17560 * 179.72153 * 15 14 13 17 17 H 1.07999 * 120.00326 * 34.54526 * 16 15 14 18 18 C 1.39894 * 119.99555 * 214.54257 * 16 15 14 19 19 N 1.30873 * 120.00386 * 356.19034 * 18 16 15 20 20 Si 1.86803 * 119.99673 * 176.19246 * 18 16 15 21 21 H 1.48498 * 109.47192 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47033 * 120.00303 * 20 18 16 23 23 H 1.48497 * 109.46989 * 239.99755 * 20 18 16 24 24 C 1.40839 * 119.64596 * 359.73511 * 15 14 13 25 25 C 1.36420 * 119.81770 * 0.02562 * 24 15 14 26 26 C 1.39055 * 120.18105 * 359.97438 * 10 9 8 27 27 C 1.37672 * 120.08786 * 359.97438 * 26 10 9 28 28 H 1.08997 * 109.46746 * 299.99387 * 1 2 3 29 29 H 1.08998 * 109.47243 * 59.99174 * 1 2 3 30 30 H 1.08995 * 109.47513 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46410 * 240.00307 * 2 1 3 32 32 H 1.09003 * 109.47170 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47685 * 300.00556 * 3 2 1 34 34 H 1.09011 * 109.46882 * 60.00774 * 3 2 1 35 35 H 1.08005 * 120.04833 * 0.02562 * 8 7 5 36 36 H 1.08000 * 119.95252 * 180.02562 * 9 8 7 37 37 H 1.07999 * 119.90928 * 359.97438 * 13 12 11 38 38 H 1.08005 * 120.08889 * 180.24691 * 14 13 12 39 39 H 0.96996 * 120.00706 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.09550 * 179.97438 * 24 15 14 41 41 H 1.08000 * 119.91083 * 179.97438 * 25 24 15 42 42 H 1.08002 * 119.95545 * 179.97438 * 26 10 9 43 43 H 1.07997 * 120.03833 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0140 -0.6846 1.1854 5 6 3.1982 -1.3196 1.0845 6 8 3.8094 -1.3021 0.0345 7 6 3.7524 -2.0359 2.2484 8 6 4.9805 -2.6957 2.1456 9 6 5.4942 -3.3637 3.2344 10 6 4.7929 -3.3829 4.4349 11 8 5.2996 -4.0474 5.5037 12 6 6.4257 -3.5596 6.0814 13 6 6.9527 -2.3426 5.6535 14 6 8.0821 -1.8428 6.2327 15 6 8.7219 -2.5656 7.2584 16 6 9.8946 -2.0583 7.8591 17 1 10.0159 -0.9934 7.9921 18 6 10.8993 -2.9350 8.2820 19 7 10.7211 -4.2282 8.1893 20 14 12.4955 -2.2597 8.9790 21 1 12.4477 -0.7755 8.9772 22 1 12.6733 -2.7471 10.3704 23 1 13.6340 -2.7199 8.1441 24 6 8.1857 -3.7974 7.6814 25 6 7.0528 -4.2811 7.0953 26 6 3.5710 -2.7278 4.5413 27 6 3.0510 -2.0568 3.4575 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9563 0.8902 35 1 5.5257 -2.6816 1.2133 36 1 6.4431 -3.8734 3.1558 37 1 6.4636 -1.7919 4.8636 38 1 8.4871 -0.8975 5.9027 39 1 11.4179 -4.8361 8.4822 40 1 8.6706 -4.3579 8.4670 41 1 6.6406 -5.2257 7.4182 42 1 3.0291 -2.7455 5.4754 43 1 2.1017 -1.5486 3.5409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609551786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:57 Heat of formation + Delta-G solvation = -77.491385 kcal Electronic energy + Delta-G solvation = -25901.519009 eV Core-core repulsion = 22069.917165 eV Total energy + Delta-G solvation = -3831.601844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.82362 -40.09477 -38.05152 -36.94496 -36.42231 -33.49597 -33.38604 -31.13454 -30.74450 -29.59648 -29.11626 -27.63990 -25.44522 -24.33301 -22.85686 -22.10424 -21.14049 -20.95935 -20.45849 -18.29640 -17.92657 -17.42425 -16.98873 -16.20453 -15.77544 -15.49811 -15.24857 -14.90343 -14.42864 -14.15880 -14.03557 -13.57629 -13.51345 -13.30484 -13.12221 -12.85475 -12.67003 -12.55098 -12.46487 -12.30194 -12.09555 -11.97885 -11.67063 -11.47376 -11.25496 -11.18882 -10.97400 -10.82938 -10.79256 -10.59189 -10.15673 -9.93088 -9.48763 -9.25448 -9.09689 -8.63706 -7.76802 -7.04643 -6.69474 -4.41768 0.57583 1.31645 2.39828 2.45534 2.66321 2.84814 3.06294 3.09563 3.13393 3.55263 3.92980 4.06492 4.44330 4.50940 4.57414 4.59330 4.79706 4.82080 4.87802 5.17053 5.23356 5.31510 5.36464 5.41535 5.48569 5.52214 5.57029 5.67626 5.81124 5.94655 5.98773 6.04660 6.08948 6.21217 6.33393 6.42235 6.52465 6.73302 6.88495 7.00493 7.14194 7.43429 7.46962 7.63937 7.64287 7.92834 8.14498 8.35881 8.56015 8.83736 8.87287 10.23062 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.024016 B = 0.002218 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.617483 B =12621.843395 C =13207.041287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 C -0.171 4.171 4 O -0.350 6.350 5 C 0.515 3.485 6 O -0.512 6.512 7 C -0.155 4.155 8 C -0.035 4.035 9 C -0.159 4.159 10 C 0.163 3.837 11 O -0.271 6.271 12 C -0.016 4.016 13 C -0.158 4.158 14 C -0.186 4.186 15 C 0.088 3.912 16 C -0.461 4.461 17 H 0.077 0.923 18 C 0.069 3.931 19 N -0.813 5.813 20 Si 0.916 3.084 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.126 4.126 25 C -0.114 4.114 26 C -0.152 4.152 27 C -0.043 4.043 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.278 0.722 40 H 0.139 0.861 41 H 0.101 0.899 42 H 0.139 0.861 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.653 5.146 -11.183 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.026 3.974 3 C -0.228 4.228 4 O -0.267 6.267 5 C 0.361 3.639 6 O -0.401 6.401 7 C -0.156 4.156 8 C -0.054 4.054 9 C -0.177 4.177 10 C 0.119 3.881 11 O -0.184 6.184 12 C -0.056 4.056 13 C -0.176 4.176 14 C -0.206 4.206 15 C 0.086 3.914 16 C -0.492 4.492 17 H 0.095 0.905 18 C -0.146 4.146 19 N -0.440 5.440 20 Si 0.741 3.259 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.200 1.200 24 C -0.145 4.145 25 C -0.133 4.133 26 C -0.170 4.170 27 C -0.061 4.061 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.156 0.844 41 H 0.119 0.881 42 H 0.157 0.843 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.444 4.800 -11.376 19.772 hybrid contribution 0.933 0.341 -0.044 0.994 sum -14.511 5.141 -11.420 19.168 Atomic orbital electron populations 1.21891 0.92343 1.03230 1.03192 1.22736 0.94934 0.92735 0.87017 1.22220 1.02347 0.95170 1.03078 1.86613 1.36301 1.62776 1.41017 1.21124 0.78997 0.75861 0.87901 1.90814 1.59568 1.59455 1.30275 1.19021 0.97909 1.05808 0.92859 1.21075 0.92791 0.92717 0.98787 1.21558 1.01905 1.01858 0.92401 1.19120 0.92409 0.89731 0.86844 1.84028 1.42090 1.50297 1.42006 1.18716 0.89693 0.96200 1.01016 1.20485 0.99211 0.95769 1.02167 1.20729 0.98354 1.01802 0.99689 1.17707 0.91830 0.91915 0.89939 1.19496 1.00518 0.94579 1.34577 0.90516 1.25873 1.00607 0.94603 0.93510 1.69737 1.34014 1.02843 1.37446 0.86135 0.80811 0.80132 0.78850 1.18598 1.19940 1.19967 1.21266 0.93392 0.98633 1.01234 1.19925 0.96964 0.99031 0.97393 1.21186 0.97478 0.98289 1.00043 1.21241 0.98801 0.95378 0.90699 0.91285 0.90380 0.91633 0.89695 0.91837 0.90724 0.91416 0.84304 0.84187 0.88481 0.88332 0.91054 0.84386 0.88068 0.84331 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.57 37.16 0.36 -0.59 16 2 C 0.08 0.73 3.19 -26.73 -0.09 0.64 16 3 C -0.17 -1.37 9.55 37.16 0.35 -1.02 16 4 O -0.35 -4.00 9.12 -40.61 -0.37 -4.37 16 5 C 0.52 6.93 7.86 34.49 0.27 7.20 16 6 O -0.51 -7.87 15.60 -19.27 -0.30 -8.17 16 7 C -0.15 -2.09 5.87 -104.97 -0.62 -2.70 16 8 C -0.04 -0.50 9.58 -39.20 -0.38 -0.87 16 9 C -0.16 -2.46 8.33 -39.49 -0.33 -2.79 16 10 C 0.16 2.72 4.70 -38.98 -0.18 2.53 16 11 O -0.27 -5.34 9.97 -2.09 -0.02 -5.37 16 12 C -0.02 -0.35 6.56 -38.75 -0.25 -0.60 16 13 C -0.16 -3.46 8.72 -39.82 -0.35 -3.81 16 14 C -0.19 -4.43 9.74 -39.25 -0.38 -4.81 16 15 C 0.09 2.28 5.55 -106.81 -0.59 1.69 16 16 C -0.46 -11.92 9.03 -37.84 -0.34 -12.26 16 17 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 18 C 0.07 1.70 5.42 -17.34 -0.09 1.60 16 19 N -0.81 -20.59 10.60 55.54 0.59 -20.00 16 20 Si 0.92 18.56 29.56 -169.99 -5.03 13.54 16 21 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 C -0.13 -3.16 8.62 -39.25 -0.34 -3.50 16 25 C -0.11 -2.63 9.92 -39.82 -0.40 -3.03 16 26 C -0.15 -2.11 9.97 -39.49 -0.39 -2.50 16 27 C -0.04 -0.53 9.61 -39.21 -0.38 -0.90 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.84 7.16 -51.93 -0.37 0.46 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.14 1.80 7.64 -52.48 -0.40 1.40 16 36 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.10 1.95 6.17 -52.49 -0.32 1.62 16 38 H 0.10 2.21 8.06 -52.48 -0.42 1.78 16 39 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 40 H 0.14 3.58 6.13 -52.49 -0.32 3.25 16 41 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 42 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.14 1.38 7.60 -52.49 -0.40 0.98 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -28.17 369.91 -9.27 -37.44 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.59 Total: 7.08 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -4.12 Total: -25.71 kcal Atomic # 7 Polarization: -20.59 SS G_CDS: 0.59 Total: -20.00 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.69 Total: -17.91 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.17 -9.27 -37.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609551786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.052 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds