Wall clock time and date at job start Sat Apr 11 2020 01:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47225 * 2 1 4 4 O 1.45195 * 109.47229 * 120.00926 * 2 1 3 5 5 C 1.34743 * 117.00202 * 149.99651 * 4 2 1 6 6 O 1.21506 * 120.00038 * 359.97438 * 5 4 2 7 7 C 1.47473 * 120.00181 * 179.97438 * 5 4 2 8 8 C 1.39798 * 120.08941 * 179.97438 * 7 5 4 9 9 C 1.37675 * 119.90951 * 180.02562 * 8 7 5 10 10 C 1.39049 * 120.08755 * 0.02562 * 9 8 7 11 11 O 1.35666 * 119.90763 * 179.70079 * 10 9 8 12 12 C 1.35640 * 118.00136 * 67.72582 * 11 10 9 13 13 C 1.39351 * 119.81779 * 6.01158 * 12 11 10 14 14 C 1.36417 * 120.17807 * 179.75814 * 13 12 11 15 15 C 1.40844 * 119.81787 * 0.51381 * 14 13 12 16 16 C 1.41193 * 120.17560 * 179.72153 * 15 14 13 17 17 H 1.07999 * 120.00326 * 34.54526 * 16 15 14 18 18 C 1.39894 * 119.99555 * 214.54257 * 16 15 14 19 19 N 1.30873 * 120.00386 * 356.19034 * 18 16 15 20 20 Si 1.86803 * 119.99673 * 176.19246 * 18 16 15 21 21 H 1.48498 * 109.47192 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47033 * 120.00303 * 20 18 16 23 23 H 1.48497 * 109.46989 * 239.99755 * 20 18 16 24 24 C 1.40839 * 119.64596 * 359.73511 * 15 14 13 25 25 C 1.36420 * 119.81770 * 0.02562 * 24 15 14 26 26 C 1.39055 * 120.18105 * 359.97438 * 10 9 8 27 27 C 1.37672 * 120.08786 * 359.97438 * 26 10 9 28 28 H 1.08997 * 109.46746 * 299.99387 * 1 2 3 29 29 H 1.08998 * 109.47243 * 59.99174 * 1 2 3 30 30 H 1.08995 * 109.47513 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46410 * 240.00307 * 2 1 3 32 32 H 1.09003 * 109.47170 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47685 * 300.00556 * 3 2 1 34 34 H 1.09011 * 109.46882 * 60.00774 * 3 2 1 35 35 H 1.08005 * 120.04833 * 0.02562 * 8 7 5 36 36 H 1.08000 * 119.95252 * 180.02562 * 9 8 7 37 37 H 1.07999 * 119.90928 * 359.97438 * 13 12 11 38 38 H 1.08005 * 120.08889 * 180.24691 * 14 13 12 39 39 H 0.96996 * 120.00706 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.09550 * 179.97438 * 24 15 14 41 41 H 1.08000 * 119.91083 * 179.97438 * 25 24 15 42 42 H 1.08002 * 119.95545 * 179.97438 * 26 10 9 43 43 H 1.07997 * 120.03833 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0140 -0.6846 1.1854 5 6 3.1982 -1.3196 1.0845 6 8 3.8094 -1.3021 0.0345 7 6 3.7524 -2.0359 2.2484 8 6 4.9805 -2.6957 2.1456 9 6 5.4942 -3.3637 3.2344 10 6 4.7929 -3.3829 4.4349 11 8 5.2996 -4.0474 5.5037 12 6 6.4257 -3.5596 6.0814 13 6 6.9527 -2.3426 5.6535 14 6 8.0821 -1.8428 6.2327 15 6 8.7219 -2.5656 7.2584 16 6 9.8946 -2.0583 7.8591 17 1 10.0159 -0.9934 7.9921 18 6 10.8993 -2.9350 8.2820 19 7 10.7211 -4.2282 8.1893 20 14 12.4955 -2.2597 8.9790 21 1 12.4477 -0.7755 8.9772 22 1 12.6733 -2.7471 10.3704 23 1 13.6340 -2.7199 8.1441 24 6 8.1857 -3.7974 7.6814 25 6 7.0528 -4.2811 7.0953 26 6 3.5710 -2.7278 4.5413 27 6 3.0510 -2.0568 3.4575 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9563 0.8902 35 1 5.5257 -2.6816 1.2133 36 1 6.4431 -3.8734 3.1558 37 1 6.4636 -1.7919 4.8636 38 1 8.4871 -0.8975 5.9027 39 1 11.4179 -4.8361 8.4822 40 1 8.6706 -4.3579 8.4670 41 1 6.6406 -5.2257 7.4182 42 1 3.0291 -2.7455 5.4754 43 1 2.1017 -1.5486 3.5409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609551786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:38:56 Heat of formation + Delta-G solvation = -88.615386 kcal Electronic energy + Delta-G solvation = -25902.001382 eV Core-core repulsion = 22069.917165 eV Total energy + Delta-G solvation = -3832.084217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.96347 -41.39775 -39.44353 -38.29724 -37.69221 -35.24998 -34.19660 -32.26348 -32.17133 -31.25879 -30.86450 -28.19424 -27.13808 -25.60581 -24.01957 -23.35594 -22.76700 -22.33374 -21.56210 -19.49127 -19.31111 -19.24807 -18.01160 -17.23514 -17.17782 -17.04836 -16.78966 -15.84153 -15.76496 -15.43563 -15.16384 -14.82292 -14.68999 -14.58028 -14.40568 -14.17502 -14.08538 -13.81281 -13.58655 -13.34372 -13.19625 -13.16185 -13.06528 -12.79982 -12.72168 -12.52001 -12.35299 -11.92785 -11.80844 -11.73422 -11.68465 -11.50964 -11.30933 -11.04134 -10.20544 -9.91524 -9.61659 -8.86295 -8.52368 -6.34138 -0.58970 0.20627 0.85622 0.98222 1.29657 1.40800 1.48635 1.53733 1.55522 2.23607 2.30128 2.75300 2.77750 3.53525 3.59500 3.74416 3.78779 3.81719 3.94865 4.07453 4.14702 4.23017 4.26175 4.29196 4.44440 4.64922 4.73584 4.76455 4.84430 4.86217 4.88108 4.99983 5.02919 5.13318 5.14213 5.15392 5.22957 5.25819 5.30952 5.43110 5.45764 5.59722 5.72188 5.79856 6.04393 6.25890 6.56705 6.62302 6.78328 6.94899 7.02723 8.42131 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.024016 B = 0.002218 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.617483 B =12621.843395 C =13207.041287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.070 3.930 3 C -0.169 4.169 4 O -0.347 6.347 5 C 0.518 3.482 6 O -0.535 6.535 7 C -0.153 4.153 8 C -0.036 4.036 9 C -0.163 4.163 10 C 0.128 3.872 11 O -0.276 6.276 12 C -0.001 4.001 13 C -0.154 4.154 14 C -0.195 4.195 15 C 0.056 3.944 16 C -0.495 4.495 17 H 0.075 0.925 18 C 0.027 3.973 19 N -0.843 5.843 20 Si 0.988 3.012 21 H -0.259 1.259 22 H -0.266 1.266 23 H -0.270 1.270 24 C -0.142 4.142 25 C -0.124 4.124 26 C -0.144 4.144 27 C -0.027 4.027 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.146 0.854 36 H 0.132 0.868 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.285 0.715 40 H 0.123 0.877 41 H 0.117 0.883 42 H 0.157 0.843 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.537 6.431 -12.102 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 C -0.226 4.226 4 O -0.264 6.264 5 C 0.365 3.635 6 O -0.427 6.427 7 C -0.154 4.154 8 C -0.055 4.055 9 C -0.182 4.182 10 C 0.084 3.916 11 O -0.190 6.190 12 C -0.042 4.042 13 C -0.173 4.173 14 C -0.215 4.215 15 C 0.054 3.946 16 C -0.525 4.525 17 H 0.093 0.907 18 C -0.185 4.185 19 N -0.472 5.472 20 Si 0.809 3.191 21 H -0.183 1.183 22 H -0.190 1.190 23 H -0.195 1.195 24 C -0.161 4.161 25 C -0.143 4.143 26 C -0.162 4.162 27 C -0.045 4.045 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.163 0.837 36 H 0.150 0.850 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.095 0.905 40 H 0.141 0.859 41 H 0.135 0.865 42 H 0.174 0.826 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -17.369 6.088 -12.305 22.140 hybrid contribution 1.255 -0.026 0.045 1.256 sum -16.114 6.061 -12.261 21.136 Atomic orbital electron populations 1.21912 0.89875 1.03689 1.04601 1.23084 0.96768 0.92823 0.85685 1.22231 1.00952 0.94814 1.04601 1.86601 1.35071 1.62423 1.42267 1.21077 0.79377 0.75671 0.87357 1.90810 1.60361 1.60356 1.31126 1.19202 0.97631 1.05090 0.93496 1.21130 0.93246 0.92495 0.98583 1.21488 1.01764 1.02264 0.92662 1.19429 0.93895 0.92021 0.86208 1.84039 1.40893 1.51027 1.43032 1.18752 0.89781 0.95625 1.00035 1.20631 0.98587 0.95838 1.02212 1.20906 0.98965 1.02116 0.99491 1.18025 0.92651 0.92797 0.91134 1.19715 1.01549 0.94825 1.36454 0.90680 1.26725 1.03642 0.94730 0.93398 1.69810 1.35284 1.03922 1.38157 0.85062 0.76331 0.79418 0.78287 1.18277 1.19042 1.19460 1.21181 0.94402 0.98859 1.01692 1.20081 0.96627 0.99819 0.97755 1.21384 0.96279 0.97216 1.01291 1.21517 0.99440 0.94194 0.89361 0.90637 0.88199 0.91667 0.90762 0.93974 0.88472 0.90684 0.83652 0.85032 0.86451 0.87516 0.90455 0.85904 0.86470 0.82585 0.81000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.57 71.98 0.69 -0.68 16 2 C 0.07 1.12 3.19 30.59 0.10 1.22 16 3 C -0.17 -2.35 9.55 71.98 0.69 -1.66 16 4 O -0.35 -7.09 9.12 -56.53 -0.52 -7.61 16 5 C 0.52 13.01 7.86 70.26 0.55 13.56 16 6 O -0.53 -15.93 15.60 19.82 0.31 -15.62 16 7 C -0.15 -3.80 5.87 -20.09 -0.12 -3.92 16 8 C -0.04 -0.98 9.58 22.51 0.22 -0.76 16 9 C -0.16 -4.94 8.33 22.33 0.19 -4.76 16 10 C 0.13 4.09 4.70 22.66 0.11 4.19 16 11 O -0.28 -10.69 9.97 -30.38 -0.30 -11.00 16 12 C 0.00 -0.03 6.56 22.81 0.15 0.12 16 13 C -0.15 -6.73 8.72 22.11 0.19 -6.53 16 14 C -0.20 -9.44 9.74 22.48 0.22 -9.22 16 15 C 0.06 2.99 5.55 -21.28 -0.12 2.87 16 16 C -0.49 -26.38 9.03 23.40 0.21 -26.17 16 17 H 0.08 3.86 7.85 -2.91 -0.02 3.84 16 18 C 0.03 1.34 5.42 85.24 0.46 1.80 16 19 N -0.84 -43.93 10.60 21.82 0.23 -43.70 16 20 Si 0.99 38.44 29.56 68.60 2.03 40.47 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 22 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 23 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 24 C -0.14 -7.37 8.62 22.48 0.19 -7.18 16 25 C -0.12 -5.81 9.92 22.11 0.22 -5.59 16 26 C -0.14 -3.63 9.97 22.33 0.22 -3.41 16 27 C -0.03 -0.58 9.61 22.51 0.22 -0.37 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 1.36 7.16 -2.39 -0.02 1.34 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.15 3.67 7.64 -2.91 -0.02 3.65 16 36 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 37 H 0.12 4.58 6.17 -2.91 -0.02 4.56 16 38 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 39 H 0.28 13.48 8.30 -92.71 -0.77 12.71 16 40 H 0.12 6.68 6.13 -2.91 -0.02 6.66 16 41 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 42 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 43 H 0.17 2.63 7.60 -2.91 -0.02 2.61 16 Total: -1.00 -61.96 369.91 7.16 -54.81 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 1.02 Total: 29.13 kcal Atomic # 6 Polarization: -50.86 SS G_CDS: 4.39 Total: -46.48 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.23 Total: -43.70 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.51 Total: -34.22 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -61.96 7.16 -54.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609551786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.807 kcal (2) G-P(sol) polarization free energy of solvation -61.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds