Wall clock time and date at job start Sat Apr 11 2020 01:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52992 * 109.47359 * 257.14384 * 3 2 1 5 5 N 1.46500 * 109.47399 * 180.02562 * 4 3 2 6 6 C 1.46496 * 120.00025 * 270.00171 * 5 4 3 7 7 C 1.50697 * 109.47126 * 269.99879 * 6 5 4 8 8 H 1.08004 * 120.00054 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00029 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99890 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99932 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47578 * 89.99945 * 11 9 7 13 13 H 1.48508 * 109.47106 * 209.99870 * 11 9 7 14 14 H 1.48499 * 109.47275 * 329.99585 * 11 9 7 15 15 C 1.34772 * 119.99760 * 90.00015 * 5 4 3 16 16 O 1.21281 * 119.99940 * 180.02562 * 15 5 4 17 17 C 1.50703 * 120.00069 * 0.02562 * 15 5 4 18 18 C 1.50706 * 109.47001 * 179.97438 * 17 15 5 19 19 C 1.38260 * 120.11376 * 269.72444 * 18 17 15 20 20 C 1.37937 * 119.77085 * 179.91186 * 19 18 17 21 21 C 1.38909 * 120.53859 * 0.51738 * 20 19 18 22 22 C 1.37664 * 119.68761 * 359.45145 * 21 20 19 23 23 C 1.37940 * 120.10942 * 90.00026 * 18 17 15 24 24 C 1.50632 * 122.55861 * 180.80359 * 22 21 20 25 25 C 1.52730 * 110.59444 * 341.99505 * 24 22 21 26 26 C 1.53326 * 108.41106 * 51.10459 * 25 24 22 27 27 C 1.50632 * 117.75425 * 179.13595 * 21 20 19 28 28 H 1.09001 * 109.46913 * 137.14683 * 3 2 1 29 29 H 1.08996 * 109.47173 * 17.14833 * 3 2 1 30 30 H 1.09001 * 109.46863 * 60.00269 * 4 3 2 31 31 H 1.09004 * 109.47053 * 300.00510 * 4 3 2 32 32 H 1.09004 * 109.46974 * 29.99659 * 6 5 4 33 33 H 1.08998 * 109.47423 * 149.99953 * 6 5 4 34 34 H 0.96999 * 120.00110 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.46978 * 60.00374 * 17 15 5 36 36 H 1.09000 * 109.46976 * 299.99619 * 17 15 5 37 37 H 1.08005 * 120.11591 * 0.15821 * 19 18 17 38 38 H 1.07996 * 119.73306 * 180.24198 * 20 19 18 39 39 H 1.08001 * 119.72475 * 359.97438 * 23 18 17 40 40 H 1.08995 * 109.25625 * 102.28063 * 24 22 21 41 41 H 1.08998 * 109.25366 * 221.70923 * 24 22 21 42 42 H 1.08994 * 109.67764 * 291.37632 * 25 24 22 43 43 H 1.08998 * 109.70508 * 170.84815 * 25 24 22 44 44 H 1.08998 * 109.67958 * 170.46502 * 26 25 24 45 45 H 1.09007 * 109.68033 * 49.91771 * 26 25 24 46 46 H 1.09007 * 109.25429 * 282.51169 * 27 21 20 47 47 H 1.08999 * 109.25600 * 41.94182 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.3218 1.4062 5 7 4.5829 0.3231 1.4061 6 6 5.3164 -0.9132 1.6881 7 6 5.5679 -1.0212 3.1700 8 1 5.2160 -0.2466 3.8354 9 6 6.2471 -2.1090 3.6766 10 7 6.6751 -3.0524 2.8665 11 14 6.5581 -2.2432 5.5136 12 1 5.4291 -2.9631 6.1556 13 1 7.8195 -2.9909 5.7488 14 1 6.6732 -0.8824 6.0969 15 6 5.2557 1.4616 1.1465 16 8 6.4685 1.4626 1.1460 17 6 4.5010 2.7335 0.8570 18 6 5.4794 3.8513 0.6027 19 6 5.9252 4.6349 1.6509 20 6 6.8220 5.6549 1.4104 21 6 7.2733 5.9087 0.1214 22 6 6.8299 5.1281 -0.9222 23 6 5.9287 4.0997 -0.6776 24 6 7.2902 5.3345 -2.3415 25 6 7.9047 6.7225 -2.5105 26 6 8.9568 6.9232 -1.4133 27 6 8.2367 7.0503 -0.0725 28 1 2.9710 0.7542 -0.6990 29 1 2.9718 -0.9811 -0.3030 30 1 2.7549 -0.4317 2.1052 31 1 2.7540 1.3037 1.7092 32 1 4.7280 -1.7686 1.3561 33 1 6.2688 -0.8996 1.1581 34 1 7.1527 -3.8178 3.2229 35 1 3.8746 2.9871 1.7122 36 1 3.8741 2.5916 -0.0234 37 1 5.5755 4.4464 2.6553 38 1 7.1729 6.2640 2.2303 39 1 5.5768 3.4897 -1.4964 40 1 8.0351 4.5790 -2.5914 41 1 6.4382 5.2345 -3.0139 42 1 7.1281 7.4816 -2.4173 43 1 8.3768 6.7987 -3.4899 44 1 9.5258 7.8314 -1.6120 45 1 9.6296 6.0659 -1.3887 46 1 7.6880 7.9919 -0.0470 47 1 8.9715 7.0413 0.7325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069741430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:42:05 Heat of formation + Delta-G solvation = -9.444591 kcal Electronic energy + Delta-G solvation = -26944.900105 eV Core-core repulsion = 23284.374837 eV Total energy + Delta-G solvation = -3660.525268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.17664 -39.10051 -36.90077 -36.25179 -35.15893 -33.01752 -32.65790 -31.58060 -30.82633 -29.24664 -28.00721 -26.42785 -24.01835 -23.61971 -22.95175 -22.23902 -21.68632 -19.23451 -18.39698 -17.59729 -16.55333 -16.43669 -16.18361 -15.74077 -15.56907 -14.99279 -14.72204 -14.48407 -14.37933 -14.14957 -13.95938 -13.67829 -13.52612 -13.21512 -12.92866 -12.71128 -12.51163 -12.42103 -12.38261 -12.24671 -11.97512 -11.75411 -11.61742 -11.34160 -11.26330 -11.16474 -11.03997 -10.97932 -10.83119 -10.62019 -10.49655 -10.32922 -10.18654 -9.70326 -9.05272 -8.53916 -8.47217 -8.24238 -7.82952 -6.08626 -4.13070 1.48283 1.56167 2.73061 2.81147 3.28132 3.32340 3.35855 3.40627 3.61666 3.88041 4.28154 4.42733 4.54908 4.60455 4.74741 4.90177 4.97946 5.01099 5.04511 5.08811 5.16673 5.23818 5.29726 5.36505 5.39735 5.42297 5.43871 5.53221 5.56338 5.63388 5.72560 5.81154 5.82137 5.85485 5.88345 5.94472 6.07796 6.14438 6.22574 6.28091 6.59457 6.74939 6.79173 6.94711 7.18067 7.37260 7.44294 7.57388 7.87634 8.17991 8.27863 8.85272 9.01296 9.52468 10.99510 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010001 B = 0.003373 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.113201 B = 8299.218255 C =10170.484555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.217 3.783 3 C -0.051 4.051 4 C 0.117 3.883 5 N -0.599 5.599 6 C 0.245 3.755 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.509 3.491 16 O -0.523 6.523 17 C -0.108 4.108 18 C -0.056 4.056 19 C -0.105 4.105 20 C -0.119 4.119 21 C -0.084 4.084 22 C -0.077 4.077 23 C -0.106 4.106 24 C -0.080 4.080 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.078 4.078 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 18.049 -9.472 20.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.009 4.009 5 N -0.331 5.331 6 C 0.127 3.873 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.295 3.705 16 O -0.398 6.398 17 C -0.148 4.148 18 C -0.056 4.056 19 C -0.123 4.123 20 C -0.137 4.137 21 C -0.084 4.084 22 C -0.077 4.077 23 C -0.124 4.124 24 C -0.117 4.117 25 C -0.156 4.156 26 C -0.158 4.158 27 C -0.115 4.115 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.448 17.845 -9.468 20.349 hybrid contribution 0.542 -0.411 1.191 1.372 sum -1.906 17.434 -8.277 19.393 Atomic orbital electron populations 1.81206 1.13063 1.09365 1.08703 1.29114 0.95108 0.92794 0.93056 1.19912 0.81310 1.06419 1.01596 1.21301 0.82328 1.03341 0.93938 1.48223 1.04755 1.11503 1.68659 1.19327 0.92569 0.78903 0.96544 1.21421 1.36593 1.06204 0.92463 0.92412 1.24915 0.95311 0.95613 0.98151 1.69915 1.38273 1.10350 1.34718 0.86526 0.77703 0.78164 0.85216 1.20655 1.21107 1.19893 1.20218 0.88175 0.84299 0.77813 1.90718 1.13722 1.84868 1.50501 1.20828 0.97673 0.92544 1.03730 1.19229 0.97702 0.95240 0.93467 1.20898 0.97620 0.95330 0.98469 1.21036 0.98155 0.98464 0.96092 1.19497 0.98568 0.97496 0.92848 1.19461 0.97428 0.95957 0.94880 1.20918 0.97868 0.97232 0.96398 1.20447 1.00644 0.97568 0.93014 1.21529 0.98453 0.97004 0.98575 1.21549 0.97789 1.01925 0.94543 1.20429 0.96842 0.96230 0.97985 0.87592 0.86509 0.88809 0.90604 0.94803 0.93622 0.92688 0.88455 0.88708 0.86275 0.86495 0.86484 0.90670 0.91005 0.91789 0.91682 0.91727 0.91510 0.91047 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.49 18.54 42.15 0.78 -5.71 16 2 C 0.22 2.58 15.43 -20.76 -0.32 2.26 16 3 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 4 C 0.12 1.53 5.17 -4.05 -0.02 1.51 16 5 N -0.60 -10.87 2.46 -175.07 -0.43 -11.30 16 6 C 0.25 5.81 5.16 -5.20 -0.03 5.78 16 7 C -0.53 -14.13 9.39 -34.44 -0.32 -14.46 16 8 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 11 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.51 9.35 7.67 -10.99 -0.08 9.27 16 16 O -0.52 -12.31 15.61 5.56 0.09 -12.23 16 17 C -0.11 -1.41 4.39 -29.03 -0.13 -1.54 16 18 C -0.06 -0.80 4.37 -104.72 -0.46 -1.25 16 19 C -0.11 -1.48 9.71 -39.68 -0.39 -1.87 16 20 C -0.12 -1.54 9.61 -39.44 -0.38 -1.92 16 21 C -0.08 -1.04 5.74 -104.62 -0.60 -1.64 16 22 C -0.08 -0.97 5.74 -104.62 -0.60 -1.57 16 23 C -0.11 -1.43 9.27 -39.44 -0.37 -1.79 16 24 C -0.08 -0.79 5.67 -28.05 -0.16 -0.95 16 25 C -0.12 -0.97 5.98 -26.70 -0.16 -1.13 16 26 C -0.12 -1.03 5.98 -26.70 -0.16 -1.19 16 27 C -0.08 -0.74 5.67 -28.06 -0.16 -0.90 16 28 H 0.11 0.86 7.22 -51.93 -0.38 0.48 16 29 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 31 H 0.08 0.81 6.44 -51.93 -0.33 0.48 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.38 16 33 H 0.05 1.25 7.42 -51.93 -0.39 0.86 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.10 1.10 7.35 -51.93 -0.38 0.72 16 36 H 0.09 0.94 7.13 -51.93 -0.37 0.57 16 37 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 38 H 0.12 1.27 8.05 -52.49 -0.42 0.84 16 39 H 0.12 1.38 8.05 -52.49 -0.42 0.96 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 42 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 LS Contribution 392.31 15.07 5.91 5.91 Total: -1.00 -33.74 392.31 -9.83 -43.57 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.30 Total: -1.22 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -4.60 Total: -10.46 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 1.09 Total: -41.87 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.74 -9.83 -43.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069741430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.126 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds