Wall clock time and date at job start Sat Apr 11 2020 01:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52992 * 109.47359 * 257.14384 * 3 2 1 5 5 N 1.46500 * 109.47399 * 180.02562 * 4 3 2 6 6 C 1.46496 * 120.00025 * 270.00171 * 5 4 3 7 7 C 1.50697 * 109.47126 * 269.99879 * 6 5 4 8 8 H 1.08004 * 120.00054 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00029 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99890 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99932 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47578 * 89.99945 * 11 9 7 13 13 H 1.48508 * 109.47106 * 209.99870 * 11 9 7 14 14 H 1.48499 * 109.47275 * 329.99585 * 11 9 7 15 15 C 1.34772 * 119.99760 * 90.00015 * 5 4 3 16 16 O 1.21281 * 119.99940 * 180.02562 * 15 5 4 17 17 C 1.50703 * 120.00069 * 0.02562 * 15 5 4 18 18 C 1.50706 * 109.47001 * 179.97438 * 17 15 5 19 19 C 1.38260 * 120.11376 * 269.72444 * 18 17 15 20 20 C 1.37937 * 119.77085 * 179.91186 * 19 18 17 21 21 C 1.38909 * 120.53859 * 0.51738 * 20 19 18 22 22 C 1.37664 * 119.68761 * 359.45145 * 21 20 19 23 23 C 1.37940 * 120.10942 * 90.00026 * 18 17 15 24 24 C 1.50632 * 122.55861 * 180.80359 * 22 21 20 25 25 C 1.52730 * 110.59444 * 341.99505 * 24 22 21 26 26 C 1.53326 * 108.41106 * 51.10459 * 25 24 22 27 27 C 1.50632 * 117.75425 * 179.13595 * 21 20 19 28 28 H 1.09001 * 109.46913 * 137.14683 * 3 2 1 29 29 H 1.08996 * 109.47173 * 17.14833 * 3 2 1 30 30 H 1.09001 * 109.46863 * 60.00269 * 4 3 2 31 31 H 1.09004 * 109.47053 * 300.00510 * 4 3 2 32 32 H 1.09004 * 109.46974 * 29.99659 * 6 5 4 33 33 H 1.08998 * 109.47423 * 149.99953 * 6 5 4 34 34 H 0.96999 * 120.00110 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.46978 * 60.00374 * 17 15 5 36 36 H 1.09000 * 109.46976 * 299.99619 * 17 15 5 37 37 H 1.08005 * 120.11591 * 0.15821 * 19 18 17 38 38 H 1.07996 * 119.73306 * 180.24198 * 20 19 18 39 39 H 1.08001 * 119.72475 * 359.97438 * 23 18 17 40 40 H 1.08995 * 109.25625 * 102.28063 * 24 22 21 41 41 H 1.08998 * 109.25366 * 221.70923 * 24 22 21 42 42 H 1.08994 * 109.67764 * 291.37632 * 25 24 22 43 43 H 1.08998 * 109.70508 * 170.84815 * 25 24 22 44 44 H 1.08998 * 109.67958 * 170.46502 * 26 25 24 45 45 H 1.09007 * 109.68033 * 49.91771 * 26 25 24 46 46 H 1.09007 * 109.25429 * 282.51169 * 27 21 20 47 47 H 1.08999 * 109.25600 * 41.94182 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.3218 1.4062 5 7 4.5829 0.3231 1.4061 6 6 5.3164 -0.9132 1.6881 7 6 5.5679 -1.0212 3.1700 8 1 5.2160 -0.2466 3.8354 9 6 6.2471 -2.1090 3.6766 10 7 6.6751 -3.0524 2.8665 11 14 6.5581 -2.2432 5.5136 12 1 5.4291 -2.9631 6.1556 13 1 7.8195 -2.9909 5.7488 14 1 6.6732 -0.8824 6.0969 15 6 5.2557 1.4616 1.1465 16 8 6.4685 1.4626 1.1460 17 6 4.5010 2.7335 0.8570 18 6 5.4794 3.8513 0.6027 19 6 5.9252 4.6349 1.6509 20 6 6.8220 5.6549 1.4104 21 6 7.2733 5.9087 0.1214 22 6 6.8299 5.1281 -0.9222 23 6 5.9287 4.0997 -0.6776 24 6 7.2902 5.3345 -2.3415 25 6 7.9047 6.7225 -2.5105 26 6 8.9568 6.9232 -1.4133 27 6 8.2367 7.0503 -0.0725 28 1 2.9710 0.7542 -0.6990 29 1 2.9718 -0.9811 -0.3030 30 1 2.7549 -0.4317 2.1052 31 1 2.7540 1.3037 1.7092 32 1 4.7280 -1.7686 1.3561 33 1 6.2688 -0.8996 1.1581 34 1 7.1527 -3.8178 3.2229 35 1 3.8746 2.9871 1.7122 36 1 3.8741 2.5916 -0.0234 37 1 5.5755 4.4464 2.6553 38 1 7.1729 6.2640 2.2303 39 1 5.5768 3.4897 -1.4964 40 1 8.0351 4.5790 -2.5914 41 1 6.4382 5.2345 -3.0139 42 1 7.1281 7.4816 -2.4173 43 1 8.3768 6.7987 -3.4899 44 1 9.5258 7.8314 -1.6120 45 1 9.6296 6.0659 -1.3887 46 1 7.6880 7.9919 -0.0470 47 1 8.9715 7.0413 0.7325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069741430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:42:05 Heat of formation + Delta-G solvation = -26.615370 kcal Electronic energy + Delta-G solvation = -26945.644686 eV Core-core repulsion = 23284.374837 eV Total energy + Delta-G solvation = -3661.269849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.22881 -40.36243 -37.99113 -37.16548 -36.55623 -34.88424 -33.64479 -32.58585 -32.09542 -30.18840 -29.43483 -27.78852 -25.29154 -24.82296 -24.16898 -23.15269 -22.70584 -20.24881 -19.60707 -18.79254 -18.31678 -17.84775 -17.24040 -16.94593 -16.58776 -16.32214 -15.83694 -15.71880 -15.56833 -15.27675 -14.78087 -14.66937 -14.54044 -14.32137 -14.28353 -13.96355 -13.62494 -13.52211 -13.48752 -13.40116 -13.12057 -12.98814 -12.80013 -12.70327 -12.68618 -12.47879 -12.21422 -12.15376 -12.07919 -11.79961 -11.70980 -11.66334 -11.25718 -11.12058 -10.58260 -10.56550 -9.51769 -9.44516 -9.22310 -8.17797 -6.29932 0.49174 0.57617 1.38736 1.41187 1.50464 1.71292 1.86233 1.95293 2.32089 2.45508 2.87731 3.13148 3.22921 3.71455 3.81212 3.91568 3.98922 4.08591 4.12410 4.15517 4.16968 4.23005 4.32626 4.48643 4.53846 4.60733 4.66265 4.67914 4.72678 4.79730 4.86658 4.99950 5.02952 5.08266 5.09067 5.14459 5.18257 5.21144 5.28499 5.35223 5.42176 5.49535 5.62418 5.65137 5.77242 5.83824 5.90276 6.14201 6.23649 6.62610 6.76970 6.84250 7.35588 7.57209 8.88805 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010001 B = 0.003373 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.113201 B = 8299.218255 C =10170.484555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.247 3.753 3 C -0.038 4.038 4 C 0.112 3.888 5 N -0.599 5.599 6 C 0.261 3.739 7 C -0.539 4.539 8 H 0.053 0.947 9 C 0.010 3.990 10 N -0.926 5.926 11 Si 0.957 3.043 12 H -0.266 1.266 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.505 3.495 16 O -0.584 6.584 17 C -0.094 4.094 18 C -0.077 4.077 19 C -0.127 4.127 20 C -0.132 4.132 21 C -0.093 4.093 22 C -0.089 4.089 23 C -0.120 4.120 24 C -0.081 4.081 25 C -0.115 4.115 26 C -0.121 4.121 27 C -0.078 4.078 28 H 0.138 0.862 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.034 0.966 33 H 0.001 0.999 34 H 0.265 0.735 35 H 0.120 0.880 36 H 0.134 0.866 37 H 0.120 0.880 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.425 19.900 -9.970 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.071 4.071 3 C -0.079 4.079 4 C -0.012 4.012 5 N -0.330 5.330 6 C 0.139 3.861 7 C -0.578 4.578 8 H 0.071 0.929 9 C -0.189 4.189 10 N -0.566 5.566 11 Si 0.782 3.218 12 H -0.191 1.191 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.294 3.706 16 O -0.464 6.464 17 C -0.133 4.133 18 C -0.077 4.077 19 C -0.145 4.145 20 C -0.150 4.150 21 C -0.093 4.093 22 C -0.089 4.089 23 C -0.138 4.138 24 C -0.118 4.118 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.115 4.115 28 H 0.156 0.844 29 H 0.137 0.863 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.052 0.948 33 H 0.019 0.981 34 H 0.074 0.926 35 H 0.138 0.862 36 H 0.152 0.848 37 H 0.138 0.862 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.401 19.709 -9.969 22.347 hybrid contribution 0.864 -0.964 1.331 1.856 sum -2.537 18.745 -8.638 20.795 Atomic orbital electron populations 1.81252 1.14422 1.11013 1.10111 1.29142 0.94925 0.91326 0.91672 1.19842 0.80068 1.07682 1.00347 1.21535 0.79007 1.05026 0.95641 1.48098 1.06753 1.09856 1.68288 1.18767 0.91387 0.81483 0.94415 1.21767 1.36229 1.05838 0.93996 0.92897 1.25727 0.95258 0.95500 1.02383 1.70022 1.39143 1.10932 1.36502 0.85571 0.77875 0.78026 0.80282 1.19139 1.21034 1.19934 1.21151 0.87744 0.85519 0.76183 1.90689 1.16678 1.85877 1.53153 1.20827 0.97304 0.88861 1.06332 1.19429 0.98621 0.95763 0.93886 1.21114 0.98490 0.96197 0.98715 1.21325 0.98043 0.98541 0.97092 1.19906 0.98668 0.98164 0.92594 1.19860 0.97076 0.95634 0.96360 1.21211 0.98207 0.97737 0.96638 1.20511 1.01077 0.98558 0.91625 1.21532 0.98459 0.95931 0.99278 1.21569 0.97767 1.02356 0.94119 1.20496 0.96533 0.95714 0.98757 0.84406 0.86312 0.89937 0.87343 0.94834 0.98061 0.92610 0.86152 0.84821 0.86192 0.85031 0.85239 0.91270 0.89688 0.91247 0.90031 0.89700 0.92830 0.89538 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.41 18.54 20.01 0.37 -13.04 16 2 C 0.25 5.25 15.43 89.44 1.38 6.63 16 3 C -0.04 -0.67 6.03 28.79 0.17 -0.50 16 4 C 0.11 2.69 5.17 86.38 0.45 3.14 16 5 N -0.60 -21.44 2.46 -826.18 -2.03 -23.46 16 6 C 0.26 12.68 5.16 85.63 0.44 13.12 16 7 C -0.54 -29.40 9.39 25.60 0.24 -29.16 16 8 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 9 C 0.01 0.58 5.46 84.66 0.46 1.04 16 10 N -0.93 -54.16 13.29 21.45 0.28 -53.88 16 11 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 15 C 0.50 18.37 7.67 87.66 0.67 19.04 16 16 O -0.58 -28.38 15.61 -3.03 -0.05 -28.43 16 17 C -0.09 -2.26 4.39 29.10 0.13 -2.13 16 18 C -0.08 -2.11 4.37 -19.93 -0.09 -2.20 16 19 C -0.13 -3.56 9.71 22.20 0.22 -3.34 16 20 C -0.13 -3.36 9.61 22.36 0.21 -3.15 16 21 C -0.09 -2.23 5.74 -19.86 -0.11 -2.34 16 22 C -0.09 -2.16 5.74 -19.86 -0.11 -2.27 16 23 C -0.12 -3.11 9.27 22.36 0.21 -2.90 16 24 C -0.08 -1.47 5.67 29.74 0.17 -1.31 16 25 C -0.11 -1.62 5.98 30.61 0.18 -1.44 16 26 C -0.12 -1.83 5.98 30.61 0.18 -1.65 16 27 C -0.08 -1.36 5.67 29.74 0.17 -1.20 16 28 H 0.14 1.65 7.22 -2.39 -0.02 1.63 16 29 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 31 H 0.11 1.93 6.44 -2.39 -0.02 1.91 16 32 H 0.03 1.61 8.07 -2.38 -0.02 1.60 16 33 H 0.00 0.07 7.42 -2.39 -0.02 0.05 16 34 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.12 2.34 7.35 -2.39 -0.02 2.33 16 36 H 0.13 2.12 7.13 -2.39 -0.02 2.10 16 37 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.13 2.78 8.05 -2.91 -0.02 2.76 16 39 H 0.13 2.87 8.05 -2.91 -0.02 2.85 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 42 H 0.07 0.93 8.10 -2.39 -0.02 0.91 16 43 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.05 0.95 8.10 -2.38 -0.02 0.93 16 46 H 0.09 1.25 8.14 -2.38 -0.02 1.24 16 47 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 Total: -1.00 -76.68 392.31 6.54 -70.15 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.96 Total: 13.23 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 4.97 Total: -10.61 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -1.37 Total: -90.38 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.05 Total: -28.43 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -76.68 6.54 -70.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069741430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.531 kcal (2) G-P(sol) polarization free energy of solvation -76.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds