Wall clock time and date at job start Sat Apr 11 2020 01:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47219 * 2 1 4 4 C 1.42905 * 114.00163 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.46859 * 329.99684 * 4 3 2 6 6 C 1.52999 * 109.47269 * 89.99854 * 4 3 2 7 7 C 1.50703 * 109.46678 * 209.99832 * 4 3 2 8 8 N 1.29942 * 126.29030 * 315.02009 * 7 4 3 9 9 O 1.21295 * 110.25076 * 180.02562 * 8 7 4 10 10 C 1.33637 * 109.81224 * 359.97438 * 9 8 7 11 11 C 1.50703 * 126.55125 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.47289 * 270.02696 * 11 10 9 13 13 C 1.46498 * 119.99755 * 270.00096 * 12 11 10 14 14 C 1.34774 * 119.99868 * 89.99907 * 12 11 10 15 15 O 1.21589 * 120.00056 * 359.97438 * 14 12 11 16 16 N 1.34774 * 120.00155 * 180.02562 * 14 12 11 17 17 C 1.46498 * 120.00435 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.47362 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47147 * 180.02562 * 18 17 16 20 20 H 1.07989 * 119.99884 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99786 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00094 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99828 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47502 * 59.99391 * 23 21 19 25 25 H 1.48492 * 109.47297 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46985 * 299.99946 * 23 21 19 27 27 N 1.31129 * 106.90087 * 0.23128 * 10 9 8 28 28 H 1.09007 * 109.46674 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47126 * 299.99476 * 1 2 3 30 30 H 1.08997 * 109.47441 * 59.99980 * 1 2 3 31 31 H 1.09008 * 109.47234 * 239.99917 * 2 1 3 32 32 H 1.08997 * 109.47441 * 120.00020 * 2 1 3 33 33 H 1.08998 * 109.46894 * 299.99587 * 6 4 3 34 34 H 1.08994 * 109.47319 * 60.00111 * 6 4 3 35 35 H 1.08999 * 109.46871 * 180.02562 * 6 4 3 36 36 H 1.09001 * 109.47438 * 150.02477 * 11 10 9 37 37 H 1.09004 * 109.47113 * 30.02733 * 11 10 9 38 38 H 1.08999 * 109.46923 * 90.00257 * 13 12 11 39 39 H 1.08997 * 109.46694 * 209.99389 * 13 12 11 40 40 H 1.08995 * 109.47258 * 329.99665 * 13 12 11 41 41 H 0.97004 * 119.99614 * 0.02562 * 16 14 12 42 42 H 1.09001 * 109.47074 * 299.99867 * 17 16 14 43 43 H 1.09005 * 109.46706 * 60.00013 * 17 16 14 44 44 H 1.09001 * 109.47097 * 300.00073 * 18 17 16 45 45 H 1.08996 * 109.47238 * 59.99867 * 18 17 16 46 46 H 0.97000 * 120.00255 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8635 0.6016 0.5130 6 6 3.9387 1.5005 -1.4433 7 6 3.8347 2.7263 0.7098 8 7 3.2981 3.8996 0.5551 9 8 3.8484 4.7106 1.2698 10 6 4.8174 4.1134 1.9700 11 6 5.7361 4.7676 2.9695 12 7 6.9342 5.2579 2.2837 13 6 8.1054 4.3890 2.1441 14 6 6.9590 6.5082 1.7813 15 8 5.9867 7.2292 1.8967 16 7 8.0610 6.9591 1.1499 17 6 8.0877 8.3180 0.6032 18 6 9.4440 8.5760 -0.0560 19 6 9.4717 9.9741 -0.6178 20 1 8.6082 10.6144 -0.5153 21 6 10.5993 10.4354 -1.2636 22 7 11.6507 9.6554 -1.3889 23 14 10.6333 12.1681 -1.9606 24 1 10.4221 13.1470 -0.8641 25 1 11.9497 12.4186 -2.6003 26 1 9.5552 12.3165 -2.9709 27 7 4.8198 2.8505 1.6171 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.6467 0.5847 -1.9570 34 1 3.5061 2.3591 -1.9568 35 1 5.0254 1.5862 -1.4436 36 1 6.0239 4.0404 3.7288 37 1 5.2212 5.6033 3.4436 38 1 8.0286 3.8220 1.2164 39 1 9.0092 4.9980 2.1238 40 1 8.1499 3.7007 2.9881 41 1 8.8362 6.3836 1.0568 42 1 7.2963 8.4270 -0.1384 43 1 7.9328 9.0365 1.4082 44 1 10.2352 8.4672 0.6859 45 1 9.5994 7.8575 -0.8608 46 1 12.4441 9.9800 -1.8429 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344008069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:42:55 Heat of formation + Delta-G solvation = -5.406407 kcal Electronic energy + Delta-G solvation = -27420.308137 eV Core-core repulsion = 23349.108715 eV Total energy + Delta-G solvation = -4071.199422 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.70263 -40.00689 -38.94114 -36.32974 -35.73252 -34.90853 -33.52431 -32.82368 -31.88572 -30.41542 -29.76849 -28.30061 -26.38280 -25.35482 -24.53009 -23.44047 -23.20784 -21.44720 -20.97974 -19.87497 -18.30569 -17.95972 -17.73462 -17.21844 -16.52849 -16.11639 -16.05080 -15.93348 -15.71079 -14.60854 -14.51489 -14.11744 -13.94762 -13.79407 -13.62476 -13.51910 -13.12739 -12.97599 -12.81771 -12.63560 -12.45635 -12.28477 -12.24063 -12.04008 -12.00267 -11.62105 -11.45091 -11.19192 -11.17612 -11.02572 -10.65771 -10.34927 -10.32768 -10.10773 -9.96509 -9.57914 -9.29639 -9.07198 -8.52185 -8.32959 -6.09788 -4.12474 0.96756 1.89869 2.61824 2.78506 2.88110 3.31700 3.35360 3.39069 3.42422 3.64888 3.91070 4.19529 4.40638 4.44224 4.54641 4.68706 4.78339 4.83825 4.90737 4.91964 4.95549 5.08681 5.15220 5.27385 5.28357 5.33385 5.39876 5.47249 5.49901 5.57120 5.70596 5.74034 5.80225 6.10478 6.29365 6.36538 6.68112 6.73809 6.89735 6.92845 7.52487 7.60725 7.88734 8.04855 8.14891 8.29316 8.79079 8.93496 9.52283 11.01777 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019205 B = 0.002112 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.619782 B =13255.318831 C =13786.855288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.374 6.374 4 C 0.185 3.815 5 H 0.092 0.908 6 C -0.170 4.170 7 C 0.158 3.842 8 N -0.356 5.356 9 O 0.101 5.899 10 C 0.168 3.832 11 C 0.228 3.772 12 N -0.634 5.634 13 C 0.080 3.920 14 C 0.698 3.302 15 O -0.583 6.583 16 N -0.732 5.732 17 C 0.137 3.863 18 C 0.013 3.987 19 C -0.521 4.521 20 H 0.060 0.940 21 C 0.059 3.941 22 N -0.894 5.894 23 Si 0.898 3.102 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.276 1.276 27 N -0.472 5.472 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.395 0.605 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.022 0.978 45 H 0.021 0.979 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.813 -22.955 7.570 27.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.292 6.292 4 C 0.126 3.874 5 H 0.110 0.890 6 C -0.228 4.228 7 C -0.116 4.116 8 N -0.059 5.059 9 O 0.038 5.962 10 C -0.054 4.054 11 C 0.101 3.899 12 N -0.373 5.373 13 C -0.064 4.064 14 C 0.399 3.601 15 O -0.460 6.460 16 N -0.387 5.387 17 C 0.015 3.985 18 C -0.024 4.024 19 C -0.560 4.560 20 H 0.078 0.922 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.725 3.275 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.201 1.201 27 N -0.207 5.207 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.230 0.770 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.041 0.959 45 H 0.040 0.960 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.992 -22.504 6.981 27.927 hybrid contribution 0.815 0.399 -0.503 1.038 sum -14.176 -22.104 6.478 27.047 Atomic orbital electron populations 1.21741 0.93309 1.02369 1.03425 1.22598 0.95966 0.83074 1.00379 1.88014 1.19079 1.27121 1.95020 1.19909 0.82472 0.90259 0.94790 0.89002 1.22261 1.02103 1.03758 0.94662 1.25440 0.93164 0.95554 0.97399 1.74697 1.18199 1.00771 1.12252 1.85433 1.36462 1.35180 1.39083 1.29646 0.91722 0.87392 0.96685 1.19691 0.82537 0.99731 0.87944 1.47051 1.14575 1.13589 1.62105 1.21812 0.87416 0.94659 1.02475 1.16048 0.84236 0.80925 0.78853 1.90933 1.35041 1.56182 1.63873 1.45705 1.15240 1.18220 1.59519 1.21666 1.01249 0.78599 0.96991 1.19322 0.89806 0.97597 0.95698 1.21004 1.00165 0.98308 1.36537 0.92217 1.24992 0.95493 0.97841 0.95948 1.69941 1.04139 1.36317 1.42926 0.86560 0.77166 0.84381 0.79361 1.20085 1.21270 1.20108 1.71786 1.19496 1.16193 1.13258 0.90844 0.91784 0.91628 0.92879 0.93029 0.90870 0.90999 0.90835 0.85738 0.85827 0.92652 0.90525 0.90365 0.77019 0.92622 0.92468 0.95922 0.96022 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.41 6.47 37.16 0.24 0.65 16 3 O -0.37 -4.15 9.97 -35.23 -0.35 -4.50 16 4 C 0.19 1.94 3.27 -27.88 -0.09 1.85 16 5 H 0.09 0.77 7.79 -51.93 -0.40 0.37 16 6 C -0.17 -1.56 9.51 37.16 0.35 -1.20 16 7 C 0.16 2.14 7.10 -156.37 -1.11 1.03 16 8 N -0.36 -5.61 12.16 30.89 0.38 -5.24 16 9 O 0.10 1.57 11.31 18.12 0.20 1.78 16 10 C 0.17 2.15 8.10 -13.06 -0.11 2.05 16 11 C 0.23 2.29 6.07 -5.19 -0.03 2.26 16 12 N -0.63 -7.68 2.86 -188.74 -0.54 -8.22 16 13 C 0.08 0.70 10.25 59.85 0.61 1.31 16 14 C 0.70 11.75 8.28 -86.92 -0.72 11.03 16 15 O -0.58 -11.87 15.92 5.29 0.08 -11.79 16 16 N -0.73 -12.71 5.42 -65.23 -0.35 -13.06 16 17 C 0.14 2.91 5.61 -4.04 -0.02 2.89 16 18 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 19 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 23 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 N -0.47 -6.02 11.55 -9.88 -0.11 -6.13 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.30 7.87 -51.92 -0.41 -0.11 16 32 H 0.05 0.32 8.09 -51.93 -0.42 -0.10 16 33 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.12 0.77 7.89 -51.93 -0.41 0.36 16 37 H 0.12 1.24 7.42 -51.93 -0.39 0.86 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.66 6.36 -51.93 -0.33 0.33 16 40 H 0.08 0.47 7.89 -51.93 -0.41 0.06 16 41 H 0.39 5.91 6.20 -40.82 -0.25 5.66 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 392.78 15.07 5.92 5.92 Total: -1.00 -34.81 392.78 -7.30 -42.11 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.20 Total: -0.34 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -1.05 Total: 8.33 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.11 Total: -57.84 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.06 Total: -14.51 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.81 -7.30 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344008069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.703 kcal (2) G-P(sol) polarization free energy of solvation -34.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds