Wall clock time and date at job start Sat Apr 11 2020 01:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47142 * 2 1 4 4 C 1.52997 * 109.47010 * 120.00086 * 2 1 3 5 5 C 1.53005 * 109.47100 * 184.99647 * 4 2 1 6 6 C 1.52997 * 109.47100 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.47057 * 180.02562 * 6 5 4 8 8 C 1.36942 * 119.99912 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99715 * 359.97438 * 8 7 6 10 10 C 1.38812 * 120.00187 * 179.97438 * 8 7 6 11 11 N 1.31620 * 119.99427 * 359.97438 * 10 8 7 12 12 Si 1.86791 * 120.00151 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47311 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47066 * 119.99990 * 12 10 8 15 15 H 1.48499 * 109.46980 * 239.99870 * 12 10 8 16 16 N 1.46501 * 109.46999 * 239.99990 * 2 1 3 17 17 C 1.34779 * 120.00008 * 85.00161 * 16 2 1 18 18 O 1.21550 * 119.99979 * 359.97438 * 17 16 2 19 19 C 1.47848 * 120.00150 * 179.97438 * 17 16 2 20 20 C 1.39575 * 120.14487 * 180.02562 * 19 17 16 21 21 C 1.37955 * 119.85263 * 180.26061 * 20 19 17 22 22 C 1.38362 * 120.14149 * 359.43978 * 21 20 19 23 23 C 1.50701 * 119.85431 * 180.30234 * 22 21 20 24 24 F 1.39901 * 109.46955 * 120.25487 * 23 22 21 25 25 F 1.39895 * 109.47776 * 240.25961 * 23 22 21 26 26 C 1.38356 * 120.29585 * 0.56434 * 22 21 20 27 27 C 1.37959 * 120.14427 * 359.71588 * 26 22 21 28 28 H 1.08997 * 109.46983 * 300.00226 * 1 2 3 29 29 H 1.08998 * 109.47013 * 59.99862 * 1 2 3 30 30 H 1.09000 * 109.47142 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47350 * 304.99968 * 4 2 1 32 32 H 1.09006 * 109.47211 * 64.99717 * 4 2 1 33 33 H 1.08999 * 109.47281 * 300.00363 * 5 4 2 34 34 H 1.09001 * 109.46476 * 60.00400 * 5 4 2 35 35 H 1.08999 * 109.47350 * 300.00321 * 6 5 4 36 36 H 1.09006 * 109.47211 * 60.00070 * 6 5 4 37 37 H 0.96991 * 119.99906 * 359.97438 * 7 6 5 38 38 H 0.96996 * 119.99445 * 180.02562 * 11 10 8 39 39 H 0.96996 * 120.00380 * 264.99994 * 16 2 1 40 40 H 1.08002 * 120.07104 * 359.97438 * 20 19 17 41 41 H 1.07998 * 119.92975 * 179.72529 * 21 20 19 42 42 H 1.09004 * 109.47251 * 0.26252 * 23 22 21 43 43 H 1.07996 * 119.93336 * 179.74170 * 26 22 21 44 44 H 1.07997 * 120.07494 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3136 6 6 4.0749 -1.3352 2.5625 7 7 5.5349 -1.2314 2.6245 8 6 6.2188 -1.8064 3.6622 9 1 5.6817 -2.3362 4.4352 10 6 7.6022 -1.7086 3.7208 11 7 8.2566 -1.0634 2.7785 12 14 8.5349 -2.4924 5.1366 13 1 7.5745 -3.1528 6.0568 14 1 9.4855 -3.5017 4.6047 15 1 9.2863 -1.4453 5.8743 16 7 2.0183 -0.6906 -1.1962 17 6 2.1471 -0.0182 -2.3572 18 8 1.8576 1.1610 -2.4119 19 6 2.6404 -0.7150 -3.5642 20 6 2.7754 -0.0215 -4.7679 21 6 3.2312 -0.6790 -5.8919 22 6 3.5652 -2.0200 -5.8248 23 6 4.0689 -2.7301 -7.0549 24 9 5.3515 -3.2326 -6.8108 25 9 3.2066 -3.7857 -7.3701 26 6 3.4337 -2.7133 -4.6347 27 6 2.9736 -2.0692 -3.5048 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -0.2618 2.1369 32 1 1.7516 -1.7716 1.2056 33 1 3.9995 -1.0729 0.4259 34 1 3.8532 0.4369 1.3573 35 1 3.6403 -0.8761 3.4505 36 1 3.7865 -2.3855 2.5184 37 1 6.0172 -0.7559 1.9302 38 1 9.2233 -0.9953 2.8192 39 1 2.2490 -1.6317 -1.1527 40 1 2.5192 1.0263 -4.8205 41 1 3.3319 -0.1446 -6.8250 42 1 4.1059 -2.0296 -7.8892 43 1 3.6921 -3.7610 -4.5900 44 1 2.8710 -2.6116 -2.5766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755515586.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:41:46 Heat of formation + Delta-G solvation = -117.316500 kcal Electronic energy + Delta-G solvation = -26564.672641 eV Core-core repulsion = 22345.240166 eV Total energy + Delta-G solvation = -4219.432475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.155 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.36626 -47.34993 -40.57598 -38.90820 -36.79891 -34.88891 -33.18992 -32.30665 -31.53673 -30.86315 -29.40238 -26.98974 -25.68324 -23.50623 -23.32273 -22.73601 -21.17366 -20.81280 -20.58357 -18.43515 -17.85657 -17.57756 -17.46257 -17.01924 -16.51100 -15.46040 -15.13991 -15.06573 -14.75253 -14.59341 -14.34107 -14.28785 -13.96387 -13.80672 -13.71673 -13.61931 -13.51178 -13.09678 -12.97995 -12.70596 -12.64929 -12.23433 -12.13124 -11.60821 -11.45151 -11.34003 -11.19212 -10.87599 -10.82608 -10.49031 -10.43063 -10.11383 -9.98773 -9.69853 -9.56703 -9.46635 -9.17631 -8.87204 -6.91519 -5.75997 -3.04850 0.24738 0.88956 2.49202 2.93784 3.24794 3.42335 3.43361 3.48612 3.51198 3.72540 4.04294 4.37842 4.42725 4.52590 4.58127 4.62292 4.74273 4.82490 4.99232 5.02274 5.10811 5.20037 5.38662 5.49588 5.51494 5.57494 5.59189 5.70261 5.75995 5.81878 5.85719 5.94347 6.02905 6.07792 6.17597 6.29626 6.33633 6.39174 6.40761 6.84900 6.88244 7.31719 7.70367 8.01132 8.43031 9.53861 10.12717 10.46925 11.47035 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009535 B = 0.002635 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.836432 B =10623.269053 C =12858.803190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 N -0.714 5.714 17 C 0.558 3.442 18 O -0.535 6.535 19 C -0.110 4.110 20 C -0.064 4.064 21 C -0.093 4.093 22 C -0.150 4.150 23 C 0.312 3.688 24 F -0.196 7.196 25 F -0.199 7.199 26 C -0.085 4.085 27 C -0.086 4.086 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.017 0.983 36 H 0.016 0.984 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.401 0.599 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.120 0.880 43 H 0.136 0.864 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.235 -1.170 -20.281 26.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.109 0.891 4 C -0.162 4.162 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.218 1.218 15 H -0.219 1.219 16 N -0.365 5.365 17 C 0.344 3.656 18 O -0.413 6.413 19 C -0.113 4.113 20 C -0.082 4.082 21 C -0.111 4.111 22 C -0.152 4.152 23 C 0.258 3.742 24 F -0.177 7.177 25 F -0.180 7.180 26 C -0.103 4.103 27 C -0.104 4.104 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.236 0.764 40 H 0.162 0.838 41 H 0.155 0.845 42 H 0.138 0.862 43 H 0.154 0.846 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.408 -0.454 -20.123 25.968 hybrid contribution 0.997 -0.934 0.615 1.499 sum -15.410 -1.389 -19.507 24.899 Atomic orbital electron populations 1.22174 0.95253 1.02090 1.02534 1.21105 0.93723 0.97888 0.83620 0.89088 1.21864 0.96946 1.00790 0.96573 1.21743 0.93576 1.01545 0.99559 1.20644 0.86223 0.96410 0.94182 1.42392 1.00199 1.66197 1.29106 1.19283 0.89451 1.27016 1.01303 0.91169 1.24760 0.96469 1.01240 0.98675 1.69676 1.07139 1.47005 1.34381 0.86112 0.79897 0.78507 0.81660 1.20563 1.21843 1.21851 1.46040 1.66705 1.14210 1.09579 1.18193 0.77744 0.86505 0.83131 1.90776 1.50168 1.15343 1.84990 1.20190 1.02089 0.94312 0.94694 1.21270 0.95516 1.00766 0.90688 1.20927 0.98117 0.92822 0.99272 1.20569 1.03599 0.95579 0.95406 1.20438 0.73218 0.84355 0.96195 1.93047 1.39813 1.89116 1.95766 1.93025 1.70366 1.60725 1.93893 1.20946 0.97196 1.00565 0.91595 1.21365 0.96805 0.93458 0.98808 0.91370 0.92284 0.92469 0.90079 0.91376 0.92114 0.91875 0.96478 0.96586 0.78335 0.93561 0.76366 0.83786 0.84462 0.86224 0.84641 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.48 37.16 0.35 -1.18 16 2 C 0.14 1.55 2.57 -67.93 -0.17 1.38 16 3 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 4 C -0.12 -1.40 4.75 -26.73 -0.13 -1.53 16 5 C -0.13 -1.96 5.22 -26.73 -0.14 -2.10 16 6 C 0.15 3.04 6.26 -4.04 -0.03 3.01 16 7 N -0.73 -18.98 5.60 -59.91 -0.34 -19.32 16 8 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 9 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 10 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 11 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 12 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 N -0.71 -7.62 4.48 -54.75 -0.25 -7.87 16 17 C 0.56 6.91 7.74 -12.33 -0.10 6.82 16 18 O -0.53 -8.30 16.01 5.32 0.09 -8.22 16 19 C -0.11 -1.15 5.87 -104.97 -0.62 -1.77 16 20 C -0.06 -0.59 9.60 -39.19 -0.38 -0.97 16 21 C -0.09 -0.68 9.65 -39.64 -0.38 -1.07 16 22 C -0.15 -1.22 5.38 -104.53 -0.56 -1.79 16 23 C 0.31 2.21 5.45 36.01 0.20 2.40 16 24 F -0.20 -1.87 17.25 2.25 0.04 -1.83 16 25 F -0.20 -1.73 17.25 2.25 0.04 -1.69 16 26 C -0.08 -0.75 9.57 -39.64 -0.38 -1.13 16 27 C -0.09 -0.77 9.54 -39.18 -0.37 -1.14 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.95 7.75 -51.93 -0.40 0.55 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.38 10.44 7.67 -40.82 -0.31 10.13 16 38 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.40 3.50 6.64 -40.82 -0.27 3.23 16 40 H 0.14 1.30 7.65 -52.49 -0.40 0.90 16 41 H 0.14 0.56 7.94 -52.49 -0.42 0.15 16 42 H 0.12 0.41 7.87 -51.93 -0.41 0.00 16 43 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.14 0.96 6.41 -52.49 -0.34 0.62 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -34.69 379.94 -8.24 -42.93 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.29 Total: 7.21 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -2.95 Total: -6.57 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.14 Total: -55.14 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.08 Total: -3.53 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.69 -8.24 -42.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755515586.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.389 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds