Wall clock time and date at job start Sat Apr 11 2020 01:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47202 * 2 1 4 4 C 1.52999 * 109.47269 * 240.00522 * 2 1 3 5 5 N 1.46499 * 109.47276 * 184.99913 * 4 2 1 6 6 C 1.46499 * 120.00136 * 269.99459 * 5 4 2 7 7 C 1.34784 * 119.99971 * 89.99654 * 5 4 2 8 8 O 1.21274 * 119.99897 * 359.72827 * 7 5 4 9 9 C 1.50695 * 119.99635 * 179.97438 * 7 5 4 10 10 H 1.09002 * 109.47422 * 60.00295 * 9 7 5 11 11 C 1.52994 * 109.47448 * 299.99856 * 9 7 5 12 12 C 1.50707 * 109.47011 * 180.02562 * 9 7 5 13 13 C 1.38254 * 119.96285 * 59.72388 * 12 9 7 14 14 C 1.38217 * 120.06644 * 179.72812 * 13 12 9 15 15 C 1.38404 * 119.99976 * 0.55113 * 14 13 12 16 16 F 1.35103 * 120.03706 * 179.75109 * 15 14 13 17 17 C 1.38653 * 119.92949 * 359.72143 * 15 14 13 18 18 F 1.35105 * 120.03170 * 180.02562 * 17 15 14 19 19 C 1.38211 * 119.96075 * 240.00409 * 12 9 7 20 20 N 1.46505 * 109.47239 * 120.00217 * 2 1 3 21 21 C 1.36934 * 119.99981 * 274.99629 * 20 2 1 22 22 H 1.08010 * 120.00039 * 0.02562 * 21 20 2 23 23 C 1.38810 * 120.00242 * 179.97438 * 21 20 2 24 24 N 1.31621 * 119.99937 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00271 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47164 * 59.99755 * 25 23 21 27 27 H 1.48503 * 109.47027 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46925 * 299.99963 * 25 23 21 29 29 H 1.09003 * 109.47202 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47062 * 299.99577 * 1 2 3 31 31 H 1.08994 * 109.47262 * 59.99493 * 1 2 3 32 32 H 1.08998 * 109.47074 * 64.99488 * 4 2 1 33 33 H 1.09008 * 109.46412 * 304.99494 * 4 2 1 34 34 H 1.08996 * 109.47008 * 270.00543 * 6 5 4 35 35 H 1.08997 * 109.46865 * 30.00228 * 6 5 4 36 36 H 1.08998 * 109.47058 * 149.99741 * 6 5 4 37 37 H 1.08997 * 109.47563 * 300.00368 * 11 9 7 38 38 H 1.09008 * 109.47290 * 60.00053 * 11 9 7 39 39 H 1.09005 * 109.47504 * 180.02562 * 11 9 7 40 40 H 1.08002 * 119.96558 * 0.02562 * 13 12 9 41 41 H 1.08001 * 119.99563 * 180.27816 * 14 13 12 42 42 H 1.07999 * 120.00426 * 0.02562 * 19 12 9 43 43 H 0.96992 * 120.00048 * 95.00205 * 20 2 1 44 44 H 0.96997 * 120.00458 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8262 -1.1906 6 6 4.3343 0.2342 -1.7613 7 6 4.0758 -1.8986 -0.6116 8 8 3.3851 -2.7741 -0.1349 9 6 5.5776 -2.0069 -0.5519 10 1 5.9813 -1.1598 0.0028 11 6 6.1462 -2.0041 -1.9722 12 6 5.9616 -3.2897 0.1398 13 6 5.5544 -4.5038 -0.3814 14 6 5.9101 -5.6818 0.2480 15 6 6.6650 -5.6463 1.4075 16 9 7.0088 -6.7971 2.0262 17 6 7.0685 -4.4284 1.9333 18 9 7.8059 -4.3914 3.0647 19 6 6.7155 -3.2508 1.2975 20 7 2.0183 -0.6907 1.1962 21 6 2.1492 -0.0076 2.3757 22 1 1.8920 1.0403 2.4244 23 6 2.6114 -0.6620 3.5092 24 7 2.9244 -1.9391 3.4501 25 14 2.7892 0.2696 5.1185 26 1 1.4668 0.8065 5.5284 27 1 3.2983 -0.6488 6.1685 28 1 3.7446 1.3920 4.9377 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.7516 -0.1582 -2.1370 33 1 1.6053 -1.7198 -1.2951 34 1 4.5423 0.0094 -2.8074 35 1 3.8090 1.1867 -1.6919 36 1 5.2721 0.2954 -1.2093 37 1 5.7426 -2.8511 -2.5269 38 1 5.8684 -1.0765 -2.4730 39 1 7.2325 -2.0829 -1.9290 40 1 4.9619 -4.5320 -1.2839 41 1 5.5952 -6.6298 -0.1626 42 1 7.0287 -2.3015 1.7063 43 1 2.2490 -1.6317 1.1526 44 1 3.2477 -2.3964 4.2421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755617347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:41:51 Heat of formation + Delta-G solvation = -79.422104 kcal Electronic energy + Delta-G solvation = -29101.884562 eV Core-core repulsion = 24884.095312 eV Total energy + Delta-G solvation = -4217.789251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.155 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.21178 -48.28886 -40.19744 -38.46323 -35.94832 -34.71905 -33.52600 -31.82892 -30.69995 -29.10865 -28.49224 -26.98646 -25.92100 -24.10889 -23.51072 -23.07993 -21.67045 -19.87726 -18.87758 -17.73272 -17.42233 -16.94689 -16.71783 -16.15539 -16.02050 -15.63056 -15.25547 -14.71506 -14.67029 -14.37613 -14.24923 -13.79556 -13.73863 -13.51996 -13.42285 -13.10328 -12.82487 -12.54482 -12.27846 -12.18053 -11.98078 -11.94595 -11.60423 -11.47530 -11.35449 -11.26437 -11.11059 -10.87538 -10.77699 -10.62782 -10.34687 -10.02040 -9.52188 -9.19388 -8.82281 -8.76980 -8.37433 -8.09409 -6.78857 -5.58812 -2.88942 1.13083 1.26106 3.15774 3.36492 3.47527 3.52591 3.54845 3.67325 4.03010 4.50274 4.59270 4.67027 4.69032 4.92255 5.12289 5.17637 5.22190 5.30951 5.39202 5.43848 5.44986 5.62273 5.65836 5.73766 5.79921 5.82242 5.92276 6.00597 6.02321 6.03374 6.09245 6.16291 6.23473 6.29256 6.39993 6.57668 6.69154 6.82545 6.95735 6.96304 7.16206 7.78626 7.83684 8.56500 8.76063 9.69745 10.32809 10.71701 11.60514 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009859 B = 0.005408 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.471871 B = 5175.888609 C = 6994.603415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 H 0.042 0.958 4 C 0.111 3.889 5 N -0.607 5.607 6 C 0.081 3.919 7 C 0.528 3.472 8 O -0.505 6.505 9 C -0.069 4.069 10 H 0.107 0.893 11 C -0.153 4.153 12 C -0.036 4.036 13 C -0.065 4.065 14 C -0.129 4.129 15 C 0.062 3.938 16 F -0.135 7.135 17 C 0.068 3.932 18 F -0.133 7.133 19 C -0.105 4.105 20 N -0.721 5.721 21 C -0.242 4.242 22 H 0.063 0.937 23 C -0.010 4.010 24 N -0.916 5.916 25 Si 0.896 3.104 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.289 1.289 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.399 0.601 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.138 -0.583 -15.375 17.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.060 0.940 4 C -0.012 4.012 5 N -0.341 5.341 6 C -0.063 4.063 7 C 0.315 3.685 8 O -0.378 6.378 9 C -0.090 4.090 10 H 0.125 0.875 11 C -0.210 4.210 12 C -0.036 4.036 13 C -0.083 4.083 14 C -0.148 4.148 15 C 0.042 3.958 16 F -0.114 7.114 17 C 0.047 3.953 18 F -0.111 7.111 19 C -0.124 4.124 20 N -0.367 5.367 21 C -0.373 4.373 22 H 0.081 0.919 23 C -0.207 4.207 24 N -0.563 5.563 25 Si 0.727 3.273 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.216 1.216 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.152 0.848 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.237 0.763 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.837 -1.034 -14.901 16.868 hybrid contribution 0.189 0.276 1.614 1.648 sum 8.026 -0.759 -13.287 15.541 Atomic orbital electron populations 1.22419 0.99266 1.00928 0.99862 1.20631 0.91947 0.95512 0.87653 0.94030 1.21829 0.79208 1.02047 0.98145 1.47501 1.06613 1.20875 1.59112 1.21854 0.95817 0.91213 0.97377 1.20009 0.89328 0.81834 0.77378 1.90728 1.64005 1.39758 1.43339 1.20224 0.94196 0.96629 0.97955 0.87548 1.22083 1.01468 1.03525 0.93912 1.19125 0.95928 0.94344 0.94252 1.20762 0.96913 0.90532 1.00115 1.20936 0.99075 1.00300 0.94453 1.17643 1.02580 0.80531 0.95011 1.91490 1.90695 1.47053 1.82135 1.17530 0.98379 0.93331 0.86018 1.91505 1.74372 1.97220 1.48014 1.20892 0.99255 0.97056 0.95149 1.42706 1.77649 1.11756 1.04562 1.19115 1.36924 0.93542 0.87743 0.91925 1.24715 1.02563 0.95864 0.97536 1.69721 1.50089 1.08178 1.28334 0.86456 0.77633 0.78630 0.84548 1.21495 1.21802 1.21588 0.93420 0.92709 0.94695 0.91200 0.90323 0.92930 0.91366 0.91199 0.91960 0.90517 0.91479 0.84787 0.84056 0.83912 0.76254 0.93766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.49 37.16 0.35 -2.62 16 2 C 0.15 3.04 3.20 -67.93 -0.22 2.82 16 3 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 4 C 0.11 1.78 5.14 -4.04 -0.02 1.76 16 5 N -0.61 -9.23 2.77 -181.58 -0.50 -9.74 16 6 C 0.08 0.86 8.80 59.85 0.53 1.39 16 7 C 0.53 9.21 6.24 -10.98 -0.07 9.14 16 8 O -0.50 -11.09 12.40 5.56 0.07 -11.02 16 9 C -0.07 -0.95 2.10 -92.93 -0.19 -1.14 16 10 H 0.11 1.45 7.13 -51.93 -0.37 1.08 16 11 C -0.15 -1.43 8.64 37.15 0.32 -1.11 16 12 C -0.04 -0.55 4.40 -104.62 -0.46 -1.01 16 13 C -0.06 -0.94 7.92 -39.58 -0.31 -1.25 16 14 C -0.13 -1.83 10.02 -39.53 -0.40 -2.23 16 15 C 0.06 1.01 7.31 -39.37 -0.29 0.73 16 16 F -0.14 -2.22 17.18 2.25 0.04 -2.18 16 17 C 0.07 1.16 7.31 -39.36 -0.29 0.87 16 18 F -0.13 -2.36 17.18 2.25 0.04 -2.32 16 19 C -0.10 -1.71 9.65 -39.53 -0.38 -2.09 16 20 N -0.72 -18.40 4.52 -53.42 -0.24 -18.64 16 21 C -0.24 -6.82 9.93 -15.06 -0.15 -6.97 16 22 H 0.06 1.72 7.83 -52.48 -0.41 1.31 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 24 N -0.92 -28.60 13.06 55.49 0.72 -27.88 16 25 Si 0.90 23.00 29.55 -169.99 -5.02 17.98 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.08 1.39 7.43 -51.92 -0.39 1.00 16 34 H 0.05 0.41 6.95 -51.93 -0.36 0.05 16 35 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 36 H 0.07 0.70 6.01 -51.93 -0.31 0.39 16 37 H 0.06 0.57 7.40 -51.93 -0.38 0.19 16 38 H 0.08 0.60 4.53 -51.92 -0.24 0.36 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.13 1.73 7.51 -52.49 -0.39 1.34 16 41 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.14 2.16 7.94 -52.49 -0.42 1.75 16 43 H 0.40 11.11 5.01 -40.82 -0.20 10.91 16 44 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 364.54 15.07 5.49 5.49 Total: -1.00 -34.90 364.54 -7.06 -41.96 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.98 Total: 8.46 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -1.67 Total: -2.10 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -0.02 Total: -56.26 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.08 Total: -4.51 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.90 -7.06 -41.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755617347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.462 kcal (2) G-P(sol) polarization free energy of solvation -34.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds