Wall clock time and date at job start Sat Apr 11 2020 01:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47202 * 2 1 4 4 C 1.52999 * 109.47269 * 240.00522 * 2 1 3 5 5 N 1.46499 * 109.47276 * 184.99913 * 4 2 1 6 6 C 1.46499 * 120.00136 * 269.99459 * 5 4 2 7 7 C 1.34784 * 119.99971 * 89.99654 * 5 4 2 8 8 O 1.21274 * 119.99897 * 359.72827 * 7 5 4 9 9 C 1.50695 * 119.99635 * 179.97438 * 7 5 4 10 10 H 1.09002 * 109.47422 * 60.00295 * 9 7 5 11 11 C 1.52994 * 109.47448 * 299.99856 * 9 7 5 12 12 C 1.50707 * 109.47011 * 180.02562 * 9 7 5 13 13 C 1.38254 * 119.96285 * 59.72388 * 12 9 7 14 14 C 1.38217 * 120.06644 * 179.72812 * 13 12 9 15 15 C 1.38404 * 119.99976 * 0.55113 * 14 13 12 16 16 F 1.35103 * 120.03706 * 179.75109 * 15 14 13 17 17 C 1.38653 * 119.92949 * 359.72143 * 15 14 13 18 18 F 1.35105 * 120.03170 * 180.02562 * 17 15 14 19 19 C 1.38211 * 119.96075 * 240.00409 * 12 9 7 20 20 N 1.46505 * 109.47239 * 120.00217 * 2 1 3 21 21 C 1.36934 * 119.99981 * 274.99629 * 20 2 1 22 22 H 1.08010 * 120.00039 * 0.02562 * 21 20 2 23 23 C 1.38810 * 120.00242 * 179.97438 * 21 20 2 24 24 N 1.31621 * 119.99937 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00271 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47164 * 59.99755 * 25 23 21 27 27 H 1.48503 * 109.47027 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46925 * 299.99963 * 25 23 21 29 29 H 1.09003 * 109.47202 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47062 * 299.99577 * 1 2 3 31 31 H 1.08994 * 109.47262 * 59.99493 * 1 2 3 32 32 H 1.08998 * 109.47074 * 64.99488 * 4 2 1 33 33 H 1.09008 * 109.46412 * 304.99494 * 4 2 1 34 34 H 1.08996 * 109.47008 * 270.00543 * 6 5 4 35 35 H 1.08997 * 109.46865 * 30.00228 * 6 5 4 36 36 H 1.08998 * 109.47058 * 149.99741 * 6 5 4 37 37 H 1.08997 * 109.47563 * 300.00368 * 11 9 7 38 38 H 1.09008 * 109.47290 * 60.00053 * 11 9 7 39 39 H 1.09005 * 109.47504 * 180.02562 * 11 9 7 40 40 H 1.08002 * 119.96558 * 0.02562 * 13 12 9 41 41 H 1.08001 * 119.99563 * 180.27816 * 14 13 12 42 42 H 1.07999 * 120.00426 * 0.02562 * 19 12 9 43 43 H 0.96992 * 120.00048 * 95.00205 * 20 2 1 44 44 H 0.96997 * 120.00458 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8262 -1.1906 6 6 4.3343 0.2342 -1.7613 7 6 4.0758 -1.8986 -0.6116 8 8 3.3851 -2.7741 -0.1349 9 6 5.5776 -2.0069 -0.5519 10 1 5.9813 -1.1598 0.0028 11 6 6.1462 -2.0041 -1.9722 12 6 5.9616 -3.2897 0.1398 13 6 5.5544 -4.5038 -0.3814 14 6 5.9101 -5.6818 0.2480 15 6 6.6650 -5.6463 1.4075 16 9 7.0088 -6.7971 2.0262 17 6 7.0685 -4.4284 1.9333 18 9 7.8059 -4.3914 3.0647 19 6 6.7155 -3.2508 1.2975 20 7 2.0183 -0.6907 1.1962 21 6 2.1492 -0.0076 2.3757 22 1 1.8920 1.0403 2.4244 23 6 2.6114 -0.6620 3.5092 24 7 2.9244 -1.9391 3.4501 25 14 2.7892 0.2696 5.1185 26 1 1.4668 0.8065 5.5284 27 1 3.2983 -0.6488 6.1685 28 1 3.7446 1.3920 4.9377 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.7516 -0.1582 -2.1370 33 1 1.6053 -1.7198 -1.2951 34 1 4.5423 0.0094 -2.8074 35 1 3.8090 1.1867 -1.6919 36 1 5.2721 0.2954 -1.2093 37 1 5.7426 -2.8511 -2.5269 38 1 5.8684 -1.0765 -2.4730 39 1 7.2325 -2.0829 -1.9290 40 1 4.9619 -4.5320 -1.2839 41 1 5.5952 -6.6298 -0.1626 42 1 7.0287 -2.3015 1.7063 43 1 2.2490 -1.6317 1.1526 44 1 3.2477 -2.3964 4.2421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755617347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:41:51 Heat of formation + Delta-G solvation = -100.779891 kcal Electronic energy + Delta-G solvation = -29102.810706 eV Core-core repulsion = 24884.095312 eV Total energy + Delta-G solvation = -4218.715394 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.155 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.52350 -49.60945 -41.41518 -39.69889 -37.48727 -36.08961 -34.87343 -33.65989 -31.89829 -30.63469 -29.99844 -28.04375 -27.08709 -25.67960 -25.08242 -24.28849 -22.93598 -21.39261 -20.13695 -19.23175 -18.98196 -18.35632 -17.98076 -17.44871 -17.32925 -16.94325 -16.68192 -16.24499 -16.04126 -15.75064 -15.53235 -15.51390 -14.99838 -14.71281 -14.65724 -14.43259 -13.93083 -13.92775 -13.73595 -13.44193 -13.29147 -13.06322 -12.97994 -12.78839 -12.77551 -12.66990 -12.49159 -12.41615 -12.19802 -12.14843 -11.89901 -11.76275 -11.53654 -10.91201 -10.49559 -10.01059 -9.60924 -9.33737 -8.85579 -7.81430 -5.09507 -0.09917 0.04881 1.41931 1.44273 1.50863 1.89780 2.18604 2.50909 2.58429 2.81145 3.27260 3.44671 3.47413 3.56008 3.80462 4.02759 4.08446 4.14221 4.22472 4.25669 4.32812 4.42552 4.58242 4.67536 4.70059 4.77666 4.79975 4.82391 4.87582 4.91857 4.95855 5.02039 5.04898 5.09984 5.12656 5.31569 5.33809 5.44705 5.50964 5.57890 5.75668 5.84895 6.35517 6.65548 7.42379 7.52460 8.32267 8.56410 9.38037 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009859 B = 0.005408 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.471871 B = 5175.888609 C = 6994.603415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.046 0.954 4 C 0.117 3.883 5 N -0.607 5.607 6 C 0.070 3.930 7 C 0.517 3.483 8 O -0.560 6.560 9 C -0.064 4.064 10 H 0.106 0.894 11 C -0.144 4.144 12 C -0.042 4.042 13 C -0.065 4.065 14 C -0.122 4.122 15 C 0.046 3.954 16 F -0.140 7.140 17 C 0.044 3.956 18 F -0.144 7.144 19 C -0.120 4.120 20 N -0.736 5.736 21 C -0.232 4.232 22 H 0.069 0.931 23 C -0.074 4.074 24 N -0.953 5.953 25 Si 0.956 3.044 26 H -0.282 1.282 27 H -0.304 1.304 28 H -0.277 1.277 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.152 0.848 41 H 0.171 0.829 42 H 0.145 0.855 43 H 0.386 0.614 44 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.073 1.275 -18.227 19.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 H 0.064 0.936 4 C -0.006 4.006 5 N -0.339 5.339 6 C -0.071 4.071 7 C 0.305 3.695 8 O -0.438 6.438 9 C -0.085 4.085 10 H 0.123 0.877 11 C -0.200 4.200 12 C -0.043 4.043 13 C -0.083 4.083 14 C -0.140 4.140 15 C 0.026 3.974 16 F -0.118 7.118 17 C 0.024 3.976 18 F -0.123 7.123 19 C -0.139 4.139 20 N -0.380 5.380 21 C -0.364 4.364 22 H 0.086 0.914 23 C -0.267 4.267 24 N -0.604 5.604 25 Si 0.787 3.213 26 H -0.209 1.209 27 H -0.231 1.231 28 H -0.203 1.203 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.137 0.863 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.170 0.830 41 H 0.189 0.811 42 H 0.163 0.837 43 H 0.223 0.777 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 7.766 0.913 -17.817 19.458 hybrid contribution 0.119 -0.209 2.387 2.399 sum 7.886 0.704 -15.430 17.343 Atomic orbital electron populations 1.22267 0.97929 1.00375 1.00954 1.20986 0.92800 0.95598 0.87225 0.93552 1.21747 0.79837 1.01124 0.97916 1.47641 1.06730 1.21215 1.58326 1.22208 0.95400 0.90166 0.99356 1.20652 0.90548 0.81710 0.76546 1.90700 1.65411 1.41899 1.45779 1.20274 0.92000 0.95617 1.00652 0.87650 1.22091 1.02302 1.04895 0.90759 1.19441 0.95222 0.95706 0.93901 1.21034 0.96392 0.90243 1.00603 1.21285 0.97663 1.01695 0.93373 1.17870 1.03477 0.80120 0.95886 1.91469 1.90862 1.47128 1.82379 1.17831 0.99302 0.94270 0.86219 1.91462 1.74779 1.97329 1.48683 1.21043 1.00120 0.96928 0.95821 1.42963 1.77918 1.11474 1.05681 1.19494 1.34426 0.93746 0.88766 0.91357 1.25415 1.03879 0.96651 1.00715 1.69923 1.52355 1.09816 1.28257 0.85469 0.77786 0.77421 0.80652 1.20872 1.23136 1.20291 0.94797 0.94987 0.90150 0.86339 0.92376 0.89057 0.90501 0.90680 0.91495 0.88341 0.89779 0.83020 0.81112 0.83745 0.77693 0.95086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 9.49 71.98 0.68 -4.65 16 2 C 0.14 5.40 3.20 44.99 0.14 5.54 16 3 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 4 C 0.12 3.45 5.14 86.38 0.44 3.89 16 5 N -0.61 -16.91 2.77 -846.77 -2.35 -19.26 16 6 C 0.07 1.20 8.80 127.77 1.12 2.33 16 7 C 0.52 17.53 6.24 87.65 0.55 18.08 16 8 O -0.56 -24.90 12.40 -3.01 -0.04 -24.94 16 9 C -0.06 -1.69 2.10 -12.29 -0.03 -1.72 16 10 H 0.11 2.77 7.13 -2.39 -0.02 2.75 16 11 C -0.14 -2.22 8.64 71.98 0.62 -1.60 16 12 C -0.04 -1.29 4.40 -19.86 -0.09 -1.37 16 13 C -0.06 -1.83 7.92 22.27 0.18 -1.65 16 14 C -0.12 -3.41 10.02 22.30 0.22 -3.18 16 15 C 0.05 1.54 7.31 22.41 0.16 1.71 16 16 F -0.14 -4.70 17.18 44.97 0.77 -3.92 16 17 C 0.04 1.56 7.31 22.41 0.16 1.73 16 18 F -0.14 -5.41 17.18 44.97 0.77 -4.64 16 19 C -0.12 -4.06 9.65 22.30 0.22 -3.84 16 20 N -0.74 -37.61 4.52 -322.93 -1.46 -39.07 16 21 C -0.23 -13.09 9.93 84.03 0.83 -12.26 16 22 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 23 C -0.07 -4.39 5.50 84.86 0.47 -3.93 16 24 N -0.95 -61.49 13.06 21.65 0.28 -61.21 16 25 Si 0.96 48.13 29.55 68.60 2.03 50.15 16 26 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 28 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 32 H 0.12 2.33 8.07 -2.39 -0.02 2.31 16 33 H 0.06 1.98 7.43 -2.38 -0.02 1.96 16 34 H 0.09 0.91 6.95 -2.39 -0.02 0.90 16 35 H 0.08 1.22 8.07 -2.39 -0.02 1.20 16 36 H 0.07 1.23 6.01 -2.39 -0.01 1.22 16 37 H 0.07 1.00 7.40 -2.39 -0.02 0.98 16 38 H 0.10 1.08 4.53 -2.38 -0.01 1.07 16 39 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.15 3.70 7.51 -2.91 -0.02 3.68 16 41 H 0.17 3.64 8.06 -2.91 -0.02 3.61 16 42 H 0.14 4.61 7.94 -2.91 -0.02 4.59 16 43 H 0.39 21.97 5.01 -92.71 -0.46 21.51 16 44 H 0.24 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -79.44 364.54 6.27 -73.18 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.56 Total: 30.64 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 5.70 Total: -0.91 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -3.53 Total: -119.55 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.04 Total: -24.94 kcal Atomic # 9 Polarization: -10.11 SS G_CDS: 1.55 Total: -8.56 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.15 kcal Total: -79.44 6.27 -73.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755617347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.605 kcal (2) G-P(sol) polarization free energy of solvation -79.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds