Wall clock time and date at job start Sat Apr 11 2020 01:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47260 * 2 1 4 4 H 1.08998 * 109.47173 * 305.00528 * 3 2 1 5 5 C 1.50698 * 109.47077 * 185.00542 * 3 2 1 6 6 H 1.08002 * 119.99396 * 239.72654 * 5 3 2 7 7 C 1.37873 * 120.00053 * 59.99731 * 5 3 2 8 8 N 1.31511 * 120.00018 * 359.73003 * 7 5 3 9 9 Si 1.86807 * 119.99750 * 179.72275 * 7 5 3 10 10 H 1.48495 * 109.47127 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46895 * 120.00417 * 9 7 5 12 12 H 1.48495 * 109.47125 * 240.00372 * 9 7 5 13 13 N 1.46494 * 109.46917 * 65.00023 * 3 2 1 14 14 C 1.34773 * 120.00601 * 275.00421 * 13 3 2 15 15 O 1.21278 * 119.99771 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00081 * 180.02562 * 14 13 3 17 17 N 1.46505 * 109.47130 * 179.97438 * 16 14 13 18 18 C 1.34779 * 119.99968 * 270.00201 * 17 16 14 19 19 O 1.21504 * 120.00347 * 5.05693 * 18 17 16 20 20 O 1.34639 * 119.99785 * 185.05728 * 18 17 16 21 21 C 1.45202 * 117.00135 * 179.97438 * 20 18 17 22 22 C 1.53002 * 109.46651 * 60.00305 * 21 20 18 23 23 C 1.52998 * 109.47253 * 179.97438 * 21 20 18 24 24 C 1.53000 * 109.46952 * 300.00695 * 21 20 18 25 25 C 1.46500 * 119.99857 * 89.99380 * 17 16 14 26 26 C 1.53000 * 117.49951 * 2.96388 * 25 17 16 27 27 C 1.52999 * 117.50309 * 294.30350 * 25 17 16 28 28 H 1.08993 * 109.47452 * 59.99842 * 1 2 3 29 29 H 1.09003 * 109.47332 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46931 * 299.99512 * 1 2 3 31 31 H 1.09006 * 109.46411 * 239.99929 * 2 1 3 32 32 H 1.09001 * 109.47313 * 120.00454 * 2 1 3 33 33 H 0.97001 * 119.99784 * 179.97438 * 8 7 5 34 34 H 0.97004 * 119.99658 * 94.99621 * 13 3 2 35 35 H 1.08996 * 109.47115 * 299.99117 * 16 14 13 36 36 H 1.08999 * 109.47652 * 59.99665 * 16 14 13 37 37 H 1.08996 * 109.47104 * 60.00319 * 22 21 20 38 38 H 1.08997 * 109.46614 * 180.02562 * 22 21 20 39 39 H 1.09000 * 109.47298 * 299.99748 * 22 21 20 40 40 H 1.09001 * 109.46718 * 60.00285 * 23 21 20 41 41 H 1.08997 * 109.47004 * 179.97438 * 23 21 20 42 42 H 1.08996 * 109.47607 * 300.00358 * 23 21 20 43 43 H 1.08994 * 109.47134 * 59.99372 * 24 21 20 44 44 H 1.08997 * 109.46776 * 180.02562 * 24 21 20 45 45 H 1.09000 * 109.46587 * 299.99451 * 24 21 20 46 46 H 1.09001 * 115.54852 * 148.63211 * 25 17 16 47 47 H 1.08999 * 117.49891 * 359.97438 * 26 25 17 48 48 H 1.09000 * 117.49680 * 145.01868 * 26 25 17 49 49 H 1.09000 * 117.49757 * 214.97818 * 27 25 17 50 50 H 1.08996 * 117.49527 * 359.97438 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4442 -0.1240 6 1 4.1470 1.8927 0.6501 7 6 4.1432 0.8783 -1.2281 8 7 3.4063 0.3323 -2.1706 9 14 6.0046 0.8874 -1.3854 10 1 6.5982 1.5568 -0.2002 11 1 6.5014 -0.5097 -1.4649 12 1 6.3938 1.6220 -2.6159 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3671 15 8 -0.3392 2.6326 0.4343 16 6 0.0369 3.3385 2.6546 17 7 -1.3217 3.8715 2.5268 18 6 -1.5134 5.1262 2.0734 19 8 -0.5680 5.7827 1.6841 20 8 -2.7526 5.6522 2.0518 21 6 -2.8844 7.0088 1.5512 22 6 -2.3868 7.0694 0.1056 23 6 -4.3541 7.4308 1.6021 24 6 -2.0510 7.9552 2.4175 25 6 -2.4719 3.0407 2.8916 26 6 -2.1862 1.6512 3.4647 27 6 -2.7404 1.7949 2.0451 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8293 -0.0656 -2.9476 34 1 2.2720 2.1230 1.9978 35 1 0.0682 2.6144 3.4687 36 1 0.7283 4.1539 2.8669 37 1 -2.9805 6.3951 -0.5116 38 1 -2.4853 8.0879 -0.2701 39 1 -1.3398 6.7686 0.0688 40 1 -4.7090 7.3874 2.6318 41 1 -4.4529 8.4493 1.2268 42 1 -4.9475 6.7564 0.9847 43 1 -1.0040 7.6543 2.3807 44 1 -2.1503 8.9736 2.0420 45 1 -2.4055 7.9119 3.4473 46 1 -3.3352 3.5788 3.2830 47 1 -1.1425 1.3550 3.5699 48 1 -2.8619 1.2750 4.2329 49 1 -3.7803 1.5131 1.8799 50 1 -2.0615 1.5936 1.2165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183911374.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:44:45 Heat of formation + Delta-G solvation = -107.287688 kcal Electronic energy + Delta-G solvation = -30088.488984 eV Core-core repulsion = 26116.412002 eV Total energy + Delta-G solvation = -3972.076983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.04433 -40.76346 -39.00218 -37.74831 -36.82901 -35.12013 -34.39811 -34.20721 -32.78773 -29.83757 -28.38058 -28.34658 -28.25390 -25.05024 -24.06001 -23.23414 -22.96462 -21.85547 -21.11606 -20.19580 -19.27417 -18.98693 -17.85200 -17.64372 -17.21380 -16.86805 -16.78599 -16.27504 -16.06957 -15.58568 -15.39178 -15.24990 -14.70609 -14.59298 -14.50819 -14.10107 -13.57396 -13.56086 -13.34139 -13.22741 -13.15163 -13.07036 -12.87849 -12.84744 -12.83523 -12.71549 -12.64580 -12.31399 -12.18185 -12.14484 -12.09990 -11.88260 -11.55068 -11.51720 -11.38275 -11.06177 -11.02579 -10.74216 -10.53678 -9.60952 -9.56432 -8.16639 -6.33901 0.98999 1.42204 1.43786 1.55367 1.69494 1.85587 2.36118 2.60056 2.79982 2.91298 3.12739 3.76001 3.80120 3.85757 3.95004 3.96524 3.97713 4.04954 4.09569 4.30581 4.49888 4.51589 4.58928 4.60792 4.68510 4.76055 4.77613 4.82875 4.84120 4.88911 4.93628 5.03155 5.09516 5.14145 5.21372 5.27024 5.28572 5.37410 5.37943 5.47463 5.49487 5.57355 5.65283 5.81126 5.94804 6.18747 6.25596 6.75117 6.99364 7.25179 7.33773 7.61085 8.88483 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015696 B = 0.003456 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.463365 B = 8099.000511 C = 9042.637756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.118 4.118 3 C 0.283 3.717 4 H -0.011 1.011 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.260 1.260 11 H -0.277 1.277 12 H -0.287 1.287 13 N -0.705 5.705 14 C 0.481 3.519 15 O -0.570 6.570 16 C 0.112 3.888 17 N -0.551 5.551 18 C 0.656 3.344 19 O -0.592 6.592 20 O -0.359 6.359 21 C 0.123 3.877 22 C -0.181 4.181 23 C -0.131 4.131 24 C -0.177 4.177 25 C 0.068 3.932 26 C -0.158 4.158 27 C -0.214 4.214 28 H 0.017 0.983 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.404 0.596 35 H 0.151 0.849 36 H 0.117 0.883 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.151 0.849 47 H 0.097 0.903 48 H 0.138 0.862 49 H 0.111 0.889 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.616 9.012 15.549 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.157 4.157 3 C 0.179 3.821 4 H 0.007 0.993 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.202 1.202 12 H -0.213 1.213 13 N -0.355 5.355 14 C 0.266 3.734 15 O -0.450 6.450 16 C -0.013 4.013 17 N -0.287 5.287 18 C 0.412 3.588 19 O -0.483 6.483 20 O -0.274 6.274 21 C 0.087 3.913 22 C -0.239 4.239 23 C -0.188 4.188 24 C -0.234 4.234 25 C -0.035 4.035 26 C -0.196 4.196 27 C -0.253 4.253 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.239 0.761 35 H 0.168 0.832 36 H 0.135 0.865 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.121 0.879 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.110 0.890 45 H 0.089 0.911 46 H 0.168 0.832 47 H 0.116 0.884 48 H 0.156 0.844 49 H 0.130 0.870 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.911 9.192 14.579 22.790 hybrid contribution 1.516 -0.179 -0.840 1.742 sum -13.395 9.013 13.739 21.200 Atomic orbital electron populations 1.21688 0.96801 0.98985 1.00315 1.21750 0.93863 0.98848 1.01272 1.18287 0.93408 0.89170 0.81220 0.99324 1.21638 0.91619 1.38502 1.06777 0.91100 1.25768 1.03259 0.94469 0.95060 1.70061 1.36929 1.38408 1.09961 0.85345 0.79272 0.77874 0.78131 1.18416 1.20235 1.21291 1.46211 1.15448 1.56231 1.17609 1.21547 0.82180 0.78780 0.90905 1.90646 1.52266 1.60244 1.41855 1.21504 0.82973 1.01068 0.95795 1.45772 1.06673 1.10284 1.66002 1.18041 0.82080 0.82313 0.76408 1.90902 1.43312 1.61653 1.52429 1.86295 1.28329 1.33708 1.79031 1.22441 0.98956 0.76706 0.93187 1.22471 1.02027 1.03684 0.95681 1.21857 0.90044 1.02820 1.04110 1.22450 1.00867 1.00016 1.00036 1.21988 0.90269 0.86738 1.04493 1.23466 1.03419 0.95753 0.96916 1.23654 1.03228 1.02594 0.95805 0.96362 0.93774 0.92755 0.91388 0.93722 0.92706 0.76135 0.83155 0.86517 0.93011 0.88760 0.93150 0.90340 0.87887 0.91660 0.92412 0.89050 0.91055 0.83164 0.88448 0.84437 0.87022 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.52 71.98 0.61 -4.73 16 2 C -0.12 -5.79 5.45 30.60 0.17 -5.63 16 3 C 0.28 14.62 2.24 44.25 0.10 14.72 16 4 H -0.01 -0.70 7.58 -2.39 -0.02 -0.72 16 5 C -0.55 -29.33 8.73 25.60 0.22 -29.11 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.01 0.78 5.29 84.65 0.45 1.23 16 8 N -0.92 -53.20 11.28 21.45 0.24 -52.96 16 9 Si 0.97 42.80 29.54 68.60 2.03 44.83 16 10 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 13 N -0.70 -28.80 5.02 -446.12 -2.24 -31.04 16 14 C 0.48 18.80 6.24 87.66 0.55 19.34 16 15 O -0.57 -27.07 11.41 -3.02 -0.03 -27.10 16 16 C 0.11 3.18 5.39 85.63 0.46 3.64 16 17 N -0.55 -16.11 2.29 -932.39 -2.14 -18.25 16 18 C 0.66 21.83 7.69 129.79 1.00 22.83 16 19 O -0.59 -23.10 11.51 19.83 0.23 -22.87 16 20 O -0.36 -10.15 8.90 -55.48 -0.49 -10.64 16 21 C 0.12 2.86 1.13 -10.79 -0.01 2.85 16 22 C -0.18 -4.86 8.37 71.98 0.60 -4.26 16 23 C -0.13 -1.95 8.85 71.98 0.64 -1.32 16 24 C -0.18 -3.74 8.37 71.98 0.60 -3.14 16 25 C 0.07 1.58 6.16 44.99 0.28 1.85 16 26 C -0.16 -2.90 9.74 30.62 0.30 -2.60 16 27 C -0.21 -5.49 10.16 30.62 0.31 -5.18 16 28 H 0.02 0.88 7.85 -2.39 -0.02 0.86 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.05 2.23 4.45 -2.38 -0.01 2.22 16 31 H 0.07 3.78 5.94 -2.38 -0.01 3.76 16 32 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 34 H 0.40 13.72 8.54 -92.71 -0.79 12.93 16 35 H 0.15 2.96 5.99 -2.39 -0.01 2.94 16 36 H 0.12 3.24 7.50 -2.39 -0.02 3.22 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 1.77 5.88 -2.39 -0.01 1.76 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.06 1.62 5.88 -2.39 -0.01 1.60 16 44 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.15 2.86 7.71 -2.39 -0.02 2.84 16 47 H 0.10 1.83 6.11 -2.39 -0.01 1.81 16 48 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 50 H 0.08 2.94 4.52 -2.39 -0.01 2.93 16 Total: -1.00 -74.76 387.15 4.02 -70.73 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: 0.16 Total: 36.80 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 6.27 Total: 10.50 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -4.13 Total: -102.25 kcal Atomic # 8 Polarization: -60.31 SS G_CDS: -0.30 Total: -60.61 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -74.76 4.02 -70.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183911374.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.553 kcal (2) G-P(sol) polarization free energy of solvation -74.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds