Wall clock time and date at job start Sat Apr 11 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47152 * 2 1 4 4 C 1.53003 * 109.47052 * 239.99733 * 2 1 3 5 5 O 1.45198 * 109.47070 * 119.99762 * 2 1 3 6 6 C 1.34639 * 116.99940 * 60.00050 * 5 2 1 7 7 O 1.21506 * 119.99728 * 359.97438 * 6 5 2 8 8 N 1.34781 * 119.99906 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99984 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47093 * 179.97438 * 9 8 6 11 11 H 1.08997 * 109.47265 * 55.00160 * 10 9 8 12 12 C 1.52997 * 109.46988 * 295.00028 * 10 9 8 13 13 C 1.53005 * 109.46740 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47278 * 60.00057 * 13 12 10 15 15 C 1.53003 * 109.46811 * 300.00003 * 14 13 12 16 16 C 1.52998 * 109.47450 * 60.00015 * 15 14 13 17 17 H 1.08994 * 109.47225 * 180.02562 * 16 15 14 18 18 N 1.46499 * 109.47189 * 59.99912 * 16 15 14 19 19 C 1.34773 * 119.99883 * 85.00039 * 18 16 15 20 20 O 1.21681 * 120.00324 * 359.97438 * 19 18 16 21 21 C 1.46381 * 119.99730 * 180.02562 * 19 18 16 22 22 H 1.07998 * 120.00484 * 6.31756 * 21 19 18 23 23 C 1.40049 * 119.99834 * 186.32376 * 21 19 18 24 24 N 1.30675 * 120.00198 * 175.03999 * 23 21 19 25 25 Si 1.86804 * 120.00164 * 355.03542 * 23 21 19 26 26 H 1.48500 * 109.46870 * 59.99990 * 25 23 21 27 27 H 1.48503 * 109.46923 * 300.00516 * 25 23 21 28 28 H 1.48495 * 109.47185 * 180.02562 * 25 23 21 29 29 H 1.09005 * 109.46897 * 300.00368 * 1 2 3 30 30 H 1.09001 * 109.46706 * 59.99915 * 1 2 3 31 31 H 1.08995 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47196 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46893 * 299.99504 * 3 2 1 34 34 H 1.08998 * 109.47202 * 59.99860 * 3 2 1 35 35 H 1.08995 * 109.47196 * 299.99814 * 4 2 1 36 36 H 1.08993 * 109.46922 * 60.00274 * 4 2 1 37 37 H 1.09001 * 109.46833 * 180.02562 * 4 2 1 38 38 H 0.97003 * 120.00214 * 359.97438 * 8 6 5 39 39 H 1.09000 * 109.46989 * 59.99256 * 9 8 6 40 40 H 1.09000 * 109.46900 * 299.99775 * 9 8 6 41 41 H 1.09001 * 109.46824 * 299.99531 * 12 10 9 42 42 H 1.08992 * 109.47097 * 60.00256 * 12 10 9 43 43 H 1.09007 * 109.46668 * 179.97438 * 13 12 10 44 44 H 1.08997 * 109.47336 * 300.00024 * 13 12 10 45 45 H 1.09005 * 109.47214 * 59.99562 * 14 13 12 46 46 H 1.08997 * 109.47275 * 179.97438 * 14 13 12 47 47 H 1.08997 * 109.47140 * 299.99628 * 15 14 13 48 48 H 1.08999 * 109.46803 * 180.02562 * 15 14 13 49 49 H 0.97003 * 120.00131 * 265.00063 * 18 16 15 50 50 H 0.96999 * 119.99711 * 5.08465 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5093 0.5041 8 7 2.0672 -2.6653 2.4173 9 6 1.6731 -4.0665 2.5839 10 6 2.2733 -4.6144 3.8801 11 1 1.9786 -3.9780 4.7145 12 6 3.7990 -4.6337 3.7675 13 6 4.3991 -5.1823 5.0636 14 6 3.8872 -6.6045 5.3008 15 6 2.3614 -6.5851 5.4134 16 6 1.7613 -6.0366 4.1173 17 1 0.6744 -6.0224 4.1977 18 7 2.1573 -6.8916 2.9956 19 6 1.4432 -7.9974 2.7063 20 8 0.4699 -8.2859 3.3771 21 6 1.8393 -8.8520 1.5858 22 1 2.7591 -8.6550 1.0552 23 6 1.0254 -9.9251 1.2018 24 7 1.3280 -10.6284 0.1428 25 14 -0.4928 -10.3511 2.2034 26 1 -1.4165 -9.1885 2.2209 27 1 -0.0910 -10.6850 3.5935 28 1 -1.1773 -11.5187 1.5924 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 2.6268 -2.2364 3.0835 39 1 2.0395 -4.6498 1.7391 40 1 0.5862 -4.1353 2.6287 41 1 4.0936 -5.2703 2.9332 42 1 4.1636 -3.6207 3.5981 43 1 5.4861 -5.1965 4.9831 44 1 4.1044 -4.5462 5.8982 45 1 4.1819 -7.2407 4.4661 46 1 4.3151 -6.9954 6.2239 47 1 2.0668 -5.9490 6.2480 48 1 1.9968 -7.5982 5.5828 49 1 2.9335 -6.6619 2.4610 50 1 2.1544 -10.4551 -0.3346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187282823.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:44:48 Heat of formation + Delta-G solvation = -186.060844 kcal Electronic energy + Delta-G solvation = -29327.456810 eV Core-core repulsion = 25351.963967 eV Total energy + Delta-G solvation = -3975.492843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.88123 -40.99569 -39.04346 -38.21653 -36.05152 -35.10487 -34.93261 -34.24405 -32.04173 -30.93476 -28.38177 -28.29335 -28.17130 -26.80166 -23.86176 -23.25964 -22.36654 -22.13509 -21.12550 -20.17319 -19.84043 -19.22706 -17.71729 -17.51943 -17.31676 -16.74026 -16.48634 -16.12360 -15.72670 -15.70399 -15.50684 -15.32852 -15.03408 -14.81535 -14.57566 -14.46915 -14.31184 -14.00376 -13.37911 -13.29842 -13.18299 -13.01950 -12.93536 -12.88453 -12.85144 -12.81064 -12.54135 -12.43557 -12.36884 -12.31976 -11.98502 -11.47010 -11.40456 -11.34498 -11.27385 -11.15988 -11.13997 -10.96969 -10.26978 -10.10071 -9.63630 -9.19423 -7.12845 1.12389 1.44455 1.52940 1.74459 1.96504 2.22925 2.38979 2.93363 3.12453 3.30157 3.60690 3.69285 3.75072 3.78802 3.80432 3.94317 4.18268 4.27170 4.28066 4.41329 4.52213 4.54299 4.59222 4.59999 4.68072 4.69437 4.75344 4.78693 4.82880 4.88258 4.92044 5.03105 5.06736 5.09847 5.20031 5.24965 5.26513 5.27330 5.31602 5.35669 5.45079 5.48478 5.52501 5.56726 5.59336 5.89899 6.10927 6.40182 6.65190 7.17925 7.34472 8.03907 8.11441 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012071 B = 0.003408 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.083727 B = 8214.487759 C = 9730.290807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.125 3.875 3 C -0.133 4.133 4 C -0.182 4.182 5 O -0.363 6.363 6 C 0.641 3.359 7 O -0.599 6.599 8 N -0.691 5.691 9 C 0.150 3.850 10 C -0.085 4.085 11 H 0.120 0.880 12 C -0.113 4.113 13 C -0.106 4.106 14 C -0.117 4.117 15 C -0.122 4.122 16 C 0.155 3.845 17 H 0.057 0.943 18 N -0.731 5.731 19 C 0.555 3.445 20 O -0.640 6.640 21 C -0.617 4.617 22 H 0.062 0.938 23 C 0.026 3.974 24 N -0.852 5.852 25 Si 1.168 2.832 26 H -0.300 1.300 27 H -0.295 1.295 28 H -0.312 1.312 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.420 0.580 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.039 0.961 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.032 0.968 49 H 0.394 0.606 50 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.429 25.844 6.285 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.089 3.911 3 C -0.190 4.190 4 C -0.239 4.239 5 O -0.278 6.278 6 C 0.394 3.606 7 O -0.490 6.490 8 N -0.352 5.352 9 C 0.027 3.973 10 C -0.104 4.104 11 H 0.138 0.862 12 C -0.151 4.151 13 C -0.144 4.144 14 C -0.154 4.154 15 C -0.161 4.161 16 C 0.049 3.951 17 H 0.075 0.925 18 N -0.381 5.381 19 C 0.360 3.640 20 O -0.535 6.535 21 C -0.654 4.654 22 H 0.080 0.920 23 C -0.187 4.187 24 N -0.481 5.481 25 Si 1.001 2.999 26 H -0.228 1.228 27 H -0.223 1.223 28 H -0.243 1.243 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.258 0.742 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.110 0.890 48 H 0.051 0.949 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.241 24.521 6.273 25.848 hybrid contribution 1.830 0.526 -0.690 2.025 sum 7.071 25.047 5.584 26.618 Atomic orbital electron populations 1.22486 0.94295 1.03366 1.03729 1.22413 0.94410 0.92921 0.81387 1.21871 1.02535 0.90130 1.04443 1.22489 1.01748 1.01977 0.97734 1.86294 1.71533 1.22659 1.47315 1.18350 0.78805 0.80982 0.82425 1.90945 1.42365 1.71173 1.44524 1.44568 1.55257 1.12048 1.23290 1.21200 0.99016 0.78612 0.98445 1.21578 0.97057 0.94817 0.96994 0.86167 1.21629 0.92651 1.02289 0.98522 1.21479 1.00382 0.94997 0.97507 1.21477 0.94443 0.98252 1.01275 1.21844 0.96675 1.00498 0.97108 1.20745 0.98516 0.88967 0.86833 0.92506 1.45572 1.32529 1.25986 1.34033 1.18194 0.81410 0.80867 0.83497 1.90051 1.32631 1.74503 1.56344 1.22233 1.10731 1.14963 1.17501 0.91991 1.27811 1.04879 0.91189 0.94864 1.70668 1.24151 1.39019 1.14214 0.81813 0.71905 0.73531 0.72669 1.22838 1.22308 1.24299 0.91564 0.89115 0.92668 0.90958 0.88072 0.90843 0.92738 0.89105 0.91716 0.74186 0.93126 0.93106 0.93266 0.89182 0.90748 0.89652 0.94194 0.91315 0.88990 0.94922 0.77047 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.63 8.37 71.98 0.60 -3.03 16 2 C 0.12 2.40 1.13 -10.79 -0.01 2.39 16 3 C -0.13 -1.52 8.85 71.98 0.64 -0.89 16 4 C -0.18 -3.75 8.37 71.98 0.60 -3.15 16 5 O -0.36 -8.28 9.94 -55.48 -0.55 -8.83 16 6 C 0.64 17.67 8.06 129.79 1.05 18.71 16 7 O -0.60 -21.24 11.88 19.82 0.24 -21.00 16 8 N -0.69 -15.18 5.29 -590.84 -3.12 -18.30 16 9 C 0.15 4.03 4.83 86.38 0.42 4.45 16 10 C -0.09 -1.84 2.02 -10.79 -0.02 -1.86 16 11 H 0.12 1.87 8.14 -2.39 -0.02 1.86 16 12 C -0.11 -2.03 4.91 30.60 0.15 -1.88 16 13 C -0.11 -1.75 5.92 30.60 0.18 -1.57 16 14 C -0.12 -2.79 5.77 30.60 0.18 -2.61 16 15 C -0.12 -3.48 5.60 30.59 0.17 -3.31 16 16 C 0.16 4.93 2.23 44.99 0.10 5.03 16 17 H 0.06 2.12 7.58 -2.39 -0.02 2.11 16 18 N -0.73 -29.35 3.61 -446.84 -1.61 -30.96 16 19 C 0.55 29.36 7.57 86.36 0.65 30.02 16 20 O -0.64 -36.77 11.77 -4.29 -0.05 -36.82 16 21 C -0.62 -35.73 9.96 24.83 0.25 -35.49 16 22 H 0.06 3.57 8.05 -2.91 -0.02 3.54 16 23 C 0.03 1.57 5.52 85.30 0.47 2.04 16 24 N -0.85 -50.84 13.64 21.84 0.30 -50.54 16 25 Si 1.17 63.21 25.82 68.60 1.77 64.98 16 26 H -0.30 -16.72 6.99 99.48 0.69 -16.02 16 27 H -0.30 -16.08 7.10 99.48 0.71 -15.38 16 28 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 29 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.52 5.88 -2.39 -0.01 1.51 16 32 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.05 1.54 5.88 -2.39 -0.01 1.53 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.42 6.19 7.77 -92.71 -0.72 5.47 16 39 H 0.05 1.65 7.60 -2.39 -0.02 1.63 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.05 1.09 6.50 -2.39 -0.02 1.08 16 42 H 0.09 1.16 7.18 -2.39 -0.02 1.14 16 43 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.04 1.17 7.60 -2.38 -0.02 1.15 16 46 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 47 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.39 14.59 6.64 -92.71 -0.62 13.98 16 50 H 0.28 15.94 8.72 -92.71 -0.81 15.13 16 Total: -1.00 -75.43 385.65 1.94 -73.49 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.45 Total: 19.17 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 5.42 Total: 8.84 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -4.44 Total: -99.81 kcal Atomic # 8 Polarization: -66.30 SS G_CDS: -0.37 Total: -66.66 kcal Atomic # 14 Polarization: 63.21 SS G_CDS: 1.77 Total: 64.98 kcal Total: -75.43 1.94 -73.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187282823.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.574 kcal (2) G-P(sol) polarization free energy of solvation -75.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds