Wall clock time and date at job start Sat Apr 11 2020 01:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46890 * 2 1 4 4 C 1.53005 * 109.47147 * 240.00151 * 2 1 3 5 5 O 1.45196 * 109.47117 * 120.00305 * 2 1 3 6 6 C 1.34636 * 117.00313 * 60.00174 * 5 2 1 7 7 O 1.21508 * 119.99674 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00154 * 180.02562 * 6 5 2 9 9 C 1.46496 * 120.00105 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47535 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.46716 * 304.99950 * 10 9 8 12 12 C 1.52992 * 109.46961 * 64.99580 * 10 9 8 13 13 C 1.53002 * 109.47106 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47128 * 300.00123 * 13 12 10 15 15 C 1.52997 * 109.46978 * 59.99726 * 14 13 12 16 16 C 1.52997 * 109.47317 * 185.00041 * 10 9 8 17 17 H 1.09002 * 109.47153 * 299.99641 * 16 10 9 18 18 N 1.46505 * 109.47212 * 59.99649 * 16 10 9 19 19 C 1.34769 * 119.99686 * 204.99833 * 18 16 10 20 20 O 1.21686 * 120.00558 * 0.02562 * 19 18 16 21 21 C 1.46381 * 119.99664 * 180.02562 * 19 18 16 22 22 H 1.07994 * 119.99755 * 0.02562 * 21 19 18 23 23 C 1.40051 * 119.99900 * 180.02562 * 21 19 18 24 24 N 1.30665 * 119.99773 * 359.97438 * 23 21 19 25 25 Si 1.86797 * 119.99788 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47420 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.47010 * 120.00103 * 25 23 21 28 28 H 1.48496 * 109.47120 * 239.99793 * 25 23 21 29 29 H 1.08994 * 109.47616 * 299.99484 * 1 2 3 30 30 H 1.09011 * 109.47421 * 60.00175 * 1 2 3 31 31 H 1.09007 * 109.46883 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47107 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47213 * 299.99847 * 3 2 1 34 34 H 1.08999 * 109.47171 * 60.00228 * 3 2 1 35 35 H 1.08994 * 109.47590 * 299.99698 * 4 2 1 36 36 H 1.09000 * 109.46840 * 60.00170 * 4 2 1 37 37 H 1.09005 * 109.47044 * 179.97438 * 4 2 1 38 38 H 0.97001 * 119.99516 * 359.97438 * 8 6 5 39 39 H 1.08998 * 109.47174 * 59.99261 * 9 8 6 40 40 H 1.09000 * 109.47051 * 299.99828 * 9 8 6 41 41 H 1.09002 * 109.47103 * 60.00608 * 12 10 9 42 42 H 1.08996 * 109.47747 * 300.00196 * 12 10 9 43 43 H 1.08996 * 109.47407 * 180.02562 * 13 12 10 44 44 H 1.09002 * 109.47596 * 60.00070 * 13 12 10 45 45 H 1.09002 * 109.47097 * 299.99925 * 14 13 12 46 46 H 1.08998 * 109.47844 * 180.02562 * 14 13 12 47 47 H 1.09000 * 109.47140 * 180.02562 * 15 14 13 48 48 H 1.09002 * 109.47497 * 60.00450 * 15 14 13 49 49 H 0.97000 * 119.99634 * 25.00165 * 18 16 10 50 50 H 0.97003 * 119.99908 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9517 -2.5097 0.5034 8 7 2.0672 -2.6655 2.4171 9 6 1.6732 -4.0666 2.5835 10 6 2.2723 -4.6144 3.8804 11 1 3.3519 -4.4644 3.8736 12 6 1.6627 -3.8778 5.0747 13 6 2.2623 -4.4250 6.3716 14 6 1.9562 -5.9199 6.4840 15 6 2.5658 -6.6565 5.2896 16 6 1.9658 -6.1091 3.9924 17 1 0.8862 -6.2591 3.9993 18 7 2.5496 -6.8144 2.8487 19 6 2.0268 -7.9883 2.4427 20 8 1.0696 -8.4623 3.0257 21 6 2.6104 -8.6933 1.3003 22 1 3.4601 -8.2729 0.7831 23 6 2.0668 -9.9130 0.8780 24 7 1.0390 -10.4218 1.5041 25 14 2.8112 -10.8122 -0.5803 26 1 3.9584 -10.0321 -1.1100 27 1 3.2823 -12.1524 -0.1475 28 1 1.7850 -10.9675 -1.6424 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2494 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 2.6268 -2.2366 3.0832 39 1 2.0395 -4.6499 1.7388 40 1 0.5863 -4.1355 2.6284 41 1 0.5830 -4.0278 5.0816 42 1 1.8810 -2.8129 4.9950 43 1 1.8276 -3.9006 7.2226 44 1 3.3418 -4.2748 6.3647 45 1 0.8766 -6.0702 6.4911 46 1 2.3829 -6.3098 7.4081 47 1 2.3474 -7.7214 5.3694 48 1 3.6454 -6.5063 5.2825 49 1 3.3124 -6.4364 2.3837 50 1 0.6622 -11.2664 1.2114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187282843.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:44:50 Heat of formation + Delta-G solvation = -150.143342 kcal Electronic energy + Delta-G solvation = -29038.722084 eV Core-core repulsion = 25064.786741 eV Total energy + Delta-G solvation = -3973.935344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.76356 -39.25911 -37.35131 -36.53350 -34.80671 -34.00807 -33.02033 -32.18758 -30.83452 -29.00099 -27.58842 -27.50174 -26.27881 -25.43749 -22.70198 -22.01449 -20.99800 -20.15393 -19.68823 -19.44676 -18.20695 -17.06701 -16.62072 -16.21764 -15.38729 -15.30695 -15.27876 -14.70096 -14.56213 -14.25397 -14.04180 -13.81940 -13.69825 -13.52697 -13.11970 -12.69742 -12.66848 -12.44490 -12.27812 -12.13457 -12.04789 -12.03423 -11.86840 -11.62940 -11.44657 -11.40583 -11.13587 -11.04916 -10.86693 -10.80085 -10.48040 -10.44002 -10.33082 -10.21876 -10.08998 -10.04744 -9.84573 -9.06638 -8.82880 -7.57947 -7.47577 -6.15578 -4.60542 2.18312 2.91485 3.15360 3.23745 3.28012 4.12825 4.14001 4.56201 4.59832 4.60375 4.63512 4.73155 4.74854 4.88305 5.15901 5.27405 5.29899 5.33482 5.36369 5.44191 5.51298 5.53374 5.58631 5.61546 5.66835 5.71713 5.75057 5.79997 5.85014 5.91877 5.99199 6.06886 6.09263 6.17008 6.19867 6.29162 6.29750 6.39188 6.44405 6.46118 6.53615 6.77038 6.85385 7.46733 7.47163 7.95187 8.13008 8.36274 8.44510 9.06260 9.55871 10.63111 10.82134 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.009766 B = 0.003497 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.486846 B = 8004.317152 C =10371.011402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.369 6.369 6 C 0.645 3.355 7 O -0.563 6.563 8 N -0.708 5.708 9 C 0.141 3.859 10 C -0.103 4.103 11 H 0.078 0.922 12 C -0.112 4.112 13 C -0.117 4.117 14 C -0.118 4.118 15 C -0.126 4.126 16 C 0.168 3.832 17 H 0.079 0.921 18 N -0.764 5.764 19 C 0.557 3.443 20 O -0.579 6.579 21 C -0.545 4.545 22 H 0.067 0.933 23 C 0.088 3.912 24 N -0.768 5.768 25 Si 0.905 3.095 26 H -0.264 1.264 27 H -0.277 1.277 28 H -0.276 1.276 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.402 0.598 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.055 0.945 49 H 0.378 0.622 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.855 21.394 2.788 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.284 6.284 6 C 0.398 3.602 7 O -0.452 6.452 8 N -0.367 5.367 9 C 0.019 3.981 10 C -0.123 4.123 11 H 0.096 0.904 12 C -0.150 4.150 13 C -0.154 4.154 14 C -0.156 4.156 15 C -0.165 4.165 16 C 0.060 3.940 17 H 0.097 0.903 18 N -0.418 5.418 19 C 0.361 3.639 20 O -0.462 6.462 21 C -0.582 4.582 22 H 0.085 0.915 23 C -0.131 4.131 24 N -0.396 5.396 25 Si 0.730 3.270 26 H -0.188 1.188 27 H -0.202 1.202 28 H -0.202 1.202 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.237 0.763 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.210 0.790 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.628 20.662 2.746 21.008 hybrid contribution 1.004 -0.079 -0.711 1.232 sum 3.631 20.583 2.035 21.000 Atomic orbital electron populations 1.22521 0.94066 1.05265 1.02265 1.22023 0.94334 0.91376 0.82294 1.21852 1.02177 0.92697 1.02960 1.22527 1.01526 1.03794 0.96339 1.86273 1.71793 1.23972 1.46394 1.18120 0.79209 0.80357 0.82510 1.90937 1.40897 1.70253 1.43084 1.44856 1.55437 1.13112 1.23283 1.21491 1.00393 0.77619 0.98574 1.21693 1.00648 0.96567 0.93372 0.90394 1.21578 1.00812 0.98593 0.93988 1.21532 1.00620 0.96344 0.96941 1.21525 1.01263 0.94602 0.98232 1.21943 0.99466 1.00980 0.94082 1.20387 0.99190 0.87346 0.87030 0.90342 1.46240 1.36630 1.25399 1.33522 1.18176 0.82981 0.78442 0.84295 1.90598 1.29594 1.66833 1.59134 1.20924 1.16676 1.05960 1.14640 0.91524 1.25688 0.93863 0.96941 0.96654 1.70027 1.18016 1.16084 1.35515 0.86358 0.79678 0.79476 0.81497 1.18817 1.20235 1.20180 0.92294 0.91258 0.89196 0.91538 0.90249 0.91593 0.89117 0.91268 0.92204 0.76344 0.89921 0.91078 0.91465 0.92191 0.92310 0.92141 0.91913 0.92406 0.90971 0.92639 0.79011 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 8.37 37.15 0.31 -1.64 16 2 C 0.14 1.46 1.13 -90.62 -0.10 1.35 16 3 C -0.14 -1.05 8.85 37.16 0.33 -0.72 16 4 C -0.18 -2.02 8.37 37.16 0.31 -1.71 16 5 O -0.37 -4.62 9.94 -40.31 -0.40 -5.02 16 6 C 0.65 9.31 8.06 54.06 0.44 9.75 16 7 O -0.56 -9.83 11.88 -19.28 -0.23 -10.06 16 8 N -0.71 -8.78 5.29 -65.28 -0.35 -9.12 16 9 C 0.14 2.04 4.98 -4.04 -0.02 2.02 16 10 C -0.10 -1.35 1.80 -90.63 -0.16 -1.51 16 11 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 12 C -0.11 -1.22 5.08 -26.73 -0.14 -1.36 16 13 C -0.12 -1.24 5.92 -26.73 -0.16 -1.39 16 14 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 15 C -0.13 -2.07 5.50 -26.71 -0.15 -2.22 16 16 C 0.17 2.96 1.90 -67.91 -0.13 2.83 16 17 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 18 N -0.76 -16.20 4.30 -55.19 -0.24 -16.44 16 19 C 0.56 15.44 7.71 -12.99 -0.10 15.34 16 20 O -0.58 -18.31 14.68 5.20 0.08 -18.23 16 21 C -0.54 -15.34 9.54 -35.63 -0.34 -15.68 16 22 H 0.07 1.74 7.85 -52.49 -0.41 1.32 16 23 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 24 N -0.77 -23.07 11.83 55.55 0.66 -22.41 16 25 Si 0.91 20.39 29.56 -169.99 -5.02 15.36 16 26 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.09 1.22 5.88 -51.93 -0.31 0.91 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 1.27 5.88 -51.93 -0.31 0.96 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.40 3.91 7.77 -40.82 -0.32 3.59 16 39 H 0.08 1.41 7.31 -51.93 -0.38 1.03 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.55 7.18 -51.93 -0.37 0.17 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 48 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.38 7.19 8.37 -40.82 -0.34 6.85 16 50 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 LS Contribution 393.81 15.07 5.93 5.93 Total: -1.00 -34.63 393.81 -8.46 -43.09 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -8.73 Total: 11.15 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -0.16 Total: 5.74 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.07 Total: -47.97 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.55 Total: -33.31 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.63 -8.46 -43.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187282843.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.053 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds