Wall clock time and date at job start Sat Apr 11 2020 01:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46890 * 2 1 4 4 C 1.53005 * 109.47147 * 240.00151 * 2 1 3 5 5 O 1.45196 * 109.47117 * 120.00305 * 2 1 3 6 6 C 1.34636 * 117.00313 * 60.00174 * 5 2 1 7 7 O 1.21508 * 119.99674 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00154 * 180.02562 * 6 5 2 9 9 C 1.46496 * 120.00105 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47535 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.46716 * 304.99950 * 10 9 8 12 12 C 1.52992 * 109.46961 * 64.99580 * 10 9 8 13 13 C 1.53002 * 109.47106 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47128 * 300.00123 * 13 12 10 15 15 C 1.52997 * 109.46978 * 59.99726 * 14 13 12 16 16 C 1.52997 * 109.47317 * 185.00041 * 10 9 8 17 17 H 1.09002 * 109.47153 * 299.99641 * 16 10 9 18 18 N 1.46505 * 109.47212 * 59.99649 * 16 10 9 19 19 C 1.34769 * 119.99686 * 204.99833 * 18 16 10 20 20 O 1.21686 * 120.00558 * 0.02562 * 19 18 16 21 21 C 1.46381 * 119.99664 * 180.02562 * 19 18 16 22 22 H 1.07994 * 119.99755 * 0.02562 * 21 19 18 23 23 C 1.40051 * 119.99900 * 180.02562 * 21 19 18 24 24 N 1.30665 * 119.99773 * 359.97438 * 23 21 19 25 25 Si 1.86797 * 119.99788 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47420 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.47010 * 120.00103 * 25 23 21 28 28 H 1.48496 * 109.47120 * 239.99793 * 25 23 21 29 29 H 1.08994 * 109.47616 * 299.99484 * 1 2 3 30 30 H 1.09011 * 109.47421 * 60.00175 * 1 2 3 31 31 H 1.09007 * 109.46883 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47107 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47213 * 299.99847 * 3 2 1 34 34 H 1.08999 * 109.47171 * 60.00228 * 3 2 1 35 35 H 1.08994 * 109.47590 * 299.99698 * 4 2 1 36 36 H 1.09000 * 109.46840 * 60.00170 * 4 2 1 37 37 H 1.09005 * 109.47044 * 179.97438 * 4 2 1 38 38 H 0.97001 * 119.99516 * 359.97438 * 8 6 5 39 39 H 1.08998 * 109.47174 * 59.99261 * 9 8 6 40 40 H 1.09000 * 109.47051 * 299.99828 * 9 8 6 41 41 H 1.09002 * 109.47103 * 60.00608 * 12 10 9 42 42 H 1.08996 * 109.47747 * 300.00196 * 12 10 9 43 43 H 1.08996 * 109.47407 * 180.02562 * 13 12 10 44 44 H 1.09002 * 109.47596 * 60.00070 * 13 12 10 45 45 H 1.09002 * 109.47097 * 299.99925 * 14 13 12 46 46 H 1.08998 * 109.47844 * 180.02562 * 14 13 12 47 47 H 1.09000 * 109.47140 * 180.02562 * 15 14 13 48 48 H 1.09002 * 109.47497 * 60.00450 * 15 14 13 49 49 H 0.97000 * 119.99634 * 25.00165 * 18 16 10 50 50 H 0.97003 * 119.99908 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9517 -2.5097 0.5034 8 7 2.0672 -2.6655 2.4171 9 6 1.6732 -4.0666 2.5835 10 6 2.2723 -4.6144 3.8804 11 1 3.3519 -4.4644 3.8736 12 6 1.6627 -3.8778 5.0747 13 6 2.2623 -4.4250 6.3716 14 6 1.9562 -5.9199 6.4840 15 6 2.5658 -6.6565 5.2896 16 6 1.9658 -6.1091 3.9924 17 1 0.8862 -6.2591 3.9993 18 7 2.5496 -6.8144 2.8487 19 6 2.0268 -7.9883 2.4427 20 8 1.0696 -8.4623 3.0257 21 6 2.6104 -8.6933 1.3003 22 1 3.4601 -8.2729 0.7831 23 6 2.0668 -9.9130 0.8780 24 7 1.0390 -10.4218 1.5041 25 14 2.8112 -10.8122 -0.5803 26 1 3.9584 -10.0321 -1.1100 27 1 3.2823 -12.1524 -0.1475 28 1 1.7850 -10.9675 -1.6424 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2494 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 2.6268 -2.2366 3.0832 39 1 2.0395 -4.6499 1.7388 40 1 0.5863 -4.1355 2.6284 41 1 0.5830 -4.0278 5.0816 42 1 1.8810 -2.8129 4.9950 43 1 1.8276 -3.9006 7.2226 44 1 3.3418 -4.2748 6.3647 45 1 0.8766 -6.0702 6.4911 46 1 2.3829 -6.3098 7.4081 47 1 2.3474 -7.7214 5.3694 48 1 3.6454 -6.5063 5.2825 49 1 3.3124 -6.4364 2.3837 50 1 0.6622 -11.2664 1.2114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187282843.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:44:50 Heat of formation + Delta-G solvation = -175.192610 kcal Electronic energy + Delta-G solvation = -29039.808302 eV Core-core repulsion = 25064.786741 eV Total energy + Delta-G solvation = -3975.021561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83807 -40.61816 -38.74976 -38.10716 -36.00046 -34.92749 -34.86889 -34.20878 -31.99663 -30.51547 -28.35745 -28.27242 -28.16589 -26.79148 -23.89583 -23.27545 -22.17387 -21.46267 -21.11887 -20.85174 -19.38520 -18.90440 -17.63505 -17.42676 -17.29685 -16.78855 -16.35572 -15.98566 -15.66016 -15.64320 -15.26883 -15.04763 -14.96116 -14.60654 -14.41052 -14.33543 -13.98389 -13.72293 -13.34174 -13.19349 -13.08087 -12.99289 -12.91421 -12.86472 -12.84027 -12.75604 -12.60773 -12.46589 -12.30503 -12.06820 -12.01424 -11.95216 -11.43507 -11.38161 -11.34696 -11.18117 -11.07386 -10.94022 -10.23752 -9.80160 -9.38538 -8.28139 -6.83753 1.14702 1.37817 1.38520 1.55691 1.77186 2.23755 2.49193 3.09564 3.15104 3.54909 3.68535 3.76892 3.78057 3.81373 3.92822 3.96583 4.21105 4.30371 4.34217 4.42031 4.51202 4.54638 4.60390 4.62111 4.65826 4.71598 4.77669 4.83832 4.86596 4.90300 4.98971 5.05504 5.09144 5.19406 5.21858 5.26426 5.28226 5.29733 5.31914 5.33276 5.38008 5.45682 5.56718 5.59841 5.90811 6.26212 6.34429 6.43140 6.88349 7.37056 7.58464 8.52597 8.70222 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.009766 B = 0.003497 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.486846 B = 8004.317152 C =10371.011402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.125 3.875 3 C -0.133 4.133 4 C -0.182 4.182 5 O -0.363 6.363 6 C 0.642 3.358 7 O -0.599 6.599 8 N -0.690 5.690 9 C 0.152 3.848 10 C -0.085 4.085 11 H 0.105 0.895 12 C -0.108 4.108 13 C -0.108 4.108 14 C -0.115 4.115 15 C -0.119 4.119 16 C 0.165 3.835 17 H 0.037 0.963 18 N -0.751 5.751 19 C 0.543 3.457 20 O -0.630 6.630 21 C -0.575 4.575 22 H 0.083 0.917 23 C 0.029 3.971 24 N -0.822 5.822 25 Si 0.994 3.006 26 H -0.248 1.248 27 H -0.267 1.267 28 H -0.271 1.271 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.420 0.580 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.047 0.953 46 H 0.073 0.927 47 H 0.022 0.978 48 H 0.074 0.926 49 H 0.392 0.608 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.263 24.408 2.776 25.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.088 3.912 3 C -0.190 4.190 4 C -0.240 4.240 5 O -0.278 6.278 6 C 0.395 3.605 7 O -0.490 6.490 8 N -0.351 5.351 9 C 0.029 3.971 10 C -0.104 4.104 11 H 0.124 0.876 12 C -0.146 4.146 13 C -0.146 4.146 14 C -0.153 4.153 15 C -0.158 4.158 16 C 0.059 3.941 17 H 0.055 0.945 18 N -0.404 5.404 19 C 0.347 3.653 20 O -0.517 6.517 21 C -0.612 4.612 22 H 0.102 0.898 23 C -0.186 4.186 24 N -0.451 5.451 25 Si 0.814 3.186 26 H -0.171 1.171 27 H -0.192 1.192 28 H -0.196 1.196 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.258 0.742 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.041 0.959 48 H 0.092 0.908 49 H 0.225 0.775 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.091 23.760 2.769 24.456 hybrid contribution 0.215 -0.953 -0.707 1.206 sum 5.306 22.807 2.061 23.506 Atomic orbital electron populations 1.22483 0.94281 1.03363 1.03718 1.22417 0.94430 0.92919 0.81410 1.21870 1.02527 0.90130 1.04438 1.22492 1.01760 1.02002 0.97710 1.86294 1.71544 1.22628 1.47341 1.18323 0.78812 0.80981 0.82365 1.90939 1.42439 1.71161 1.44439 1.44565 1.55214 1.12046 1.23290 1.21163 0.98979 0.78628 0.98299 1.21545 1.02292 0.92814 0.93758 0.87645 1.21604 0.99967 1.00059 0.93008 1.21510 1.02018 0.93756 0.97273 1.21516 1.00106 0.96678 0.96989 1.21839 1.00684 0.98384 0.94915 1.20544 0.96713 0.90428 0.86429 0.94480 1.45883 1.36406 1.23825 1.34249 1.18476 0.82568 0.79927 0.84333 1.90552 1.31760 1.68701 1.60644 1.21470 1.17500 1.06937 1.15268 0.89840 1.26928 0.93964 0.97702 1.00032 1.70194 1.20012 1.16967 1.37964 0.85030 0.78994 0.77999 0.76623 1.17132 1.19168 1.19574 0.91575 0.89093 0.92676 0.90984 0.88038 0.90859 0.92701 0.89073 0.91727 0.74244 0.92873 0.93414 0.92751 0.88900 0.89838 0.90119 0.93463 0.90787 0.95938 0.90777 0.77468 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.69 8.37 71.98 0.60 -3.09 16 2 C 0.12 2.46 1.13 -10.79 -0.01 2.45 16 3 C -0.13 -1.58 8.85 71.98 0.64 -0.94 16 4 C -0.18 -3.84 8.37 71.98 0.60 -3.24 16 5 O -0.36 -8.58 9.94 -55.45 -0.55 -9.13 16 6 C 0.64 18.40 8.06 129.79 1.05 19.44 16 7 O -0.60 -21.79 11.88 19.82 0.24 -21.55 16 8 N -0.69 -16.36 5.29 -590.87 -3.12 -19.49 16 9 C 0.15 4.49 4.98 86.38 0.43 4.92 16 10 C -0.08 -2.13 1.80 -10.80 -0.02 -2.15 16 11 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 12 C -0.11 -2.10 5.08 30.59 0.16 -1.95 16 13 C -0.11 -1.90 5.92 30.60 0.18 -1.72 16 14 C -0.11 -2.89 5.92 30.59 0.18 -2.71 16 15 C -0.12 -4.01 5.50 30.61 0.17 -3.84 16 16 C 0.16 6.08 1.90 45.00 0.09 6.17 16 17 H 0.04 1.68 7.58 -2.39 -0.02 1.66 16 18 N -0.75 -33.25 4.30 -446.75 -1.92 -35.17 16 19 C 0.54 31.81 7.71 86.36 0.67 32.47 16 20 O -0.63 -42.68 14.68 -4.30 -0.06 -42.74 16 21 C -0.57 -33.38 9.54 24.83 0.24 -33.14 16 22 H 0.08 4.39 7.85 -2.91 -0.02 4.37 16 23 C 0.03 1.64 5.50 85.31 0.47 2.11 16 24 N -0.82 -51.59 11.83 21.84 0.26 -51.33 16 25 Si 0.99 42.43 29.56 68.60 2.03 44.46 16 26 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 27 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.05 1.54 5.88 -2.38 -0.01 1.52 16 32 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.05 1.58 5.88 -2.39 -0.01 1.56 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.42 6.91 7.77 -92.71 -0.72 6.19 16 39 H 0.05 1.89 7.31 -2.39 -0.02 1.87 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.09 1.28 7.18 -2.39 -0.02 1.26 16 43 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 46 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 48 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.39 15.15 8.37 -92.71 -0.78 14.37 16 50 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 Total: -1.00 -83.30 393.81 1.73 -81.57 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: -0.56 Total: 38.60 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 5.43 Total: 14.78 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -4.79 Total: -105.98 kcal Atomic # 8 Polarization: -73.05 SS G_CDS: -0.38 Total: -73.42 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -83.30 1.73 -81.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187282843.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.627 kcal (2) G-P(sol) polarization free energy of solvation -83.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds