Wall clock time and date at job start Sat Apr 11 2020 01:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 O 1.45194 * 109.47339 * 239.99574 * 2 1 3 6 6 C 1.34639 * 116.99841 * 60.00459 * 5 2 1 7 7 O 1.21508 * 119.99991 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00005 * 179.97438 * 6 5 2 9 9 C 1.46505 * 119.99900 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.46949 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.47075 * 304.99918 * 10 9 8 12 12 C 1.52996 * 109.47705 * 64.99870 * 10 9 8 13 13 C 1.52996 * 109.47705 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46980 * 300.00365 * 13 12 10 15 15 C 1.52997 * 109.47248 * 59.99718 * 14 13 12 16 16 C 1.52998 * 109.46980 * 185.00235 * 10 9 8 17 17 H 1.08995 * 109.47521 * 59.99515 * 16 10 9 18 18 N 1.46497 * 109.46882 * 299.99193 * 16 10 9 19 19 C 1.34783 * 119.99812 * 154.99611 * 18 16 10 20 20 O 1.21684 * 119.99902 * 0.02562 * 19 18 16 21 21 C 1.46369 * 120.00129 * 180.02562 * 19 18 16 22 22 H 1.08000 * 120.00036 * 0.02562 * 21 19 18 23 23 C 1.40047 * 120.00334 * 180.02562 * 21 19 18 24 24 N 1.30672 * 120.00020 * 359.97438 * 23 21 19 25 25 Si 1.86799 * 120.00250 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47257 * 59.99498 * 25 23 21 27 27 H 1.48502 * 109.47290 * 179.97438 * 25 23 21 28 28 H 1.48508 * 109.47056 * 299.99603 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 36 36 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 38 38 H 0.97001 * 119.99769 * 0.02562 * 8 6 5 39 39 H 1.08999 * 109.46873 * 299.99872 * 9 8 6 40 40 H 1.08995 * 109.47310 * 60.00204 * 9 8 6 41 41 H 1.09000 * 109.47044 * 300.00359 * 12 10 9 42 42 H 1.09003 * 109.47322 * 59.99904 * 12 10 9 43 43 H 1.09003 * 109.46809 * 59.99590 * 13 12 10 44 44 H 1.08995 * 109.47389 * 179.97438 * 13 12 10 45 45 H 1.08998 * 109.47417 * 179.97438 * 14 13 12 46 46 H 1.09000 * 109.46957 * 299.99755 * 14 13 12 47 47 H 1.09003 * 109.47618 * 60.00116 * 15 14 13 48 48 H 1.09009 * 109.46906 * 179.97438 * 15 14 13 49 49 H 0.96996 * 120.00757 * 335.00593 * 18 16 10 50 50 H 0.96998 * 120.00125 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 2.0140 -0.6845 -1.1854 6 6 1.6523 -0.1729 -2.3772 7 8 0.9510 0.8182 -2.4252 8 7 2.0682 -0.7601 -3.5168 9 6 1.6742 -0.2038 -4.8136 10 6 2.2744 -1.0524 -5.9362 11 1 3.3540 -1.1207 -5.8025 12 6 1.6658 -2.4556 -5.8961 13 6 2.2656 -3.3040 -7.0191 14 6 1.9586 -2.6534 -8.3694 15 6 2.5672 -1.2502 -8.4095 16 6 1.9679 -0.4020 -7.2867 17 1 2.4014 0.5976 -7.3154 18 7 0.5169 -0.3104 -7.4664 19 6 -0.0033 0.6300 -8.2799 20 8 0.7323 1.4026 -8.8653 21 6 -1.4531 0.7220 -8.4590 22 1 -2.1060 0.0366 -7.9391 23 6 -1.9936 1.6988 -9.3046 24 7 -1.2037 2.5284 -9.9333 25 14 -3.8439 1.8166 -9.5327 26 1 -4.4885 2.0808 -8.2213 27 1 -4.1576 2.9249 -10.4702 28 1 -4.3567 0.5382 -10.0877 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 -1.7488 1.2493 36 1 3.1300 -0.7207 1.2495 37 1 1.6766 -0.2073 2.1393 38 1 2.6277 -1.5516 -3.4784 39 1 0.5873 -0.2090 -4.8960 40 1 2.0399 0.8197 -4.8961 41 1 1.8842 -2.9189 -4.9339 42 1 0.5862 -2.3874 -6.0298 43 1 3.3453 -3.3722 -6.8859 44 1 1.8324 -4.3038 -6.9902 45 1 2.3862 -3.2575 -9.1695 46 1 0.8789 -2.5850 -8.5026 47 1 3.6469 -1.3185 -8.2763 48 1 2.3488 -0.7869 -9.3718 49 1 -0.0696 -0.9263 -7.0000 50 1 -1.5781 3.2047 -10.5193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187282883.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:44:54 Heat of formation + Delta-G solvation = -171.374709 kcal Electronic energy + Delta-G solvation = -29225.531066 eV Core-core repulsion = 25250.675061 eV Total energy + Delta-G solvation = -3974.856005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.84586 -40.80000 -38.67901 -38.05037 -36.00804 -34.91132 -34.71845 -33.84136 -31.98148 -30.81521 -28.35911 -28.27406 -28.20758 -26.78397 -23.83187 -23.25563 -22.29635 -22.11324 -21.09544 -19.71483 -19.43642 -19.01020 -17.64046 -17.47776 -17.29281 -16.52246 -16.33933 -16.16563 -15.72809 -15.60137 -15.32873 -15.27596 -14.84836 -14.63816 -14.40209 -14.20607 -13.98634 -13.36474 -13.33241 -13.19176 -13.11944 -12.91684 -12.90630 -12.84648 -12.81587 -12.69503 -12.66212 -12.56625 -12.42435 -12.29610 -12.07337 -11.92478 -11.38127 -11.33140 -11.22563 -11.12374 -10.94178 -10.88158 -10.23467 -9.79794 -9.34199 -8.26679 -6.82196 1.15071 1.37846 1.41615 1.52362 1.77309 2.24389 2.51085 3.15509 3.17534 3.59385 3.73631 3.75507 3.77447 3.81362 3.87012 3.96486 4.22936 4.32523 4.32904 4.45936 4.54875 4.59881 4.62042 4.64999 4.70892 4.75267 4.77552 4.82952 4.85388 4.90232 4.96031 5.07209 5.09818 5.15900 5.23018 5.29540 5.30318 5.32056 5.32820 5.37688 5.38919 5.50781 5.59181 5.61449 5.92117 6.27676 6.38899 6.43587 6.89547 7.37357 7.61074 8.54494 8.72349 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011159 B = 0.003340 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.603450 B = 8382.091096 C =10073.417766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.125 3.875 3 C -0.182 4.182 4 C -0.133 4.133 5 O -0.364 6.364 6 C 0.642 3.358 7 O -0.599 6.599 8 N -0.690 5.690 9 C 0.154 3.846 10 C -0.084 4.084 11 H 0.113 0.887 12 C -0.111 4.111 13 C -0.105 4.105 14 C -0.114 4.114 15 C -0.121 4.121 16 C 0.161 3.839 17 H 0.039 0.961 18 N -0.742 5.742 19 C 0.545 3.455 20 O -0.631 6.631 21 C -0.577 4.577 22 H 0.082 0.918 23 C 0.030 3.970 24 N -0.822 5.822 25 Si 0.992 3.008 26 H -0.258 1.258 27 H -0.274 1.274 28 H -0.253 1.253 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.420 0.580 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.042 0.958 47 H 0.084 0.916 48 H 0.021 0.979 49 H 0.390 0.610 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.629 -13.769 19.873 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.088 3.912 3 C -0.239 4.239 4 C -0.190 4.190 5 O -0.278 6.278 6 C 0.395 3.605 7 O -0.490 6.490 8 N -0.351 5.351 9 C 0.031 3.969 10 C -0.104 4.104 11 H 0.132 0.868 12 C -0.149 4.149 13 C -0.143 4.143 14 C -0.151 4.151 15 C -0.160 4.160 16 C 0.055 3.945 17 H 0.057 0.943 18 N -0.396 5.396 19 C 0.348 3.652 20 O -0.518 6.518 21 C -0.614 4.614 22 H 0.100 0.900 23 C -0.185 4.185 24 N -0.452 5.452 25 Si 0.811 3.189 26 H -0.183 1.183 27 H -0.199 1.199 28 H -0.177 1.177 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.258 0.742 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.103 0.897 48 H 0.040 0.960 49 H 0.224 0.776 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.862 -12.582 19.411 24.432 hybrid contribution -0.945 0.372 -0.547 1.154 sum 6.917 -12.210 18.863 23.511 Atomic orbital electron populations 1.22487 0.94335 1.03028 1.04052 1.22415 0.94388 0.92532 0.81840 1.22488 1.01748 0.95624 1.04049 1.21870 1.02529 1.01240 0.93329 1.86294 1.71532 1.56461 1.13530 1.18334 0.78795 0.81466 0.81921 1.90941 1.42339 1.28257 1.87452 1.44581 1.55181 1.33018 1.02358 1.21147 0.99552 0.96492 0.79731 1.21548 1.02382 0.95528 0.90908 0.86848 1.21618 0.99955 0.93066 1.00244 1.21471 1.01937 0.98465 0.92398 1.21447 1.00148 0.94625 0.98908 1.21805 1.00431 0.96359 0.97379 1.20508 0.82567 0.97369 0.94059 0.94285 1.45837 1.05860 1.37078 1.50871 1.18427 0.89482 0.79213 0.78049 1.90548 1.62877 1.45973 1.52378 1.21402 0.91348 1.18707 1.29900 0.90024 1.26896 1.05260 0.93299 0.93023 1.70180 1.38721 1.14331 1.21921 0.85163 0.75650 0.78980 0.79061 1.18253 1.19905 1.17706 0.91619 0.92676 0.89105 0.89080 0.91677 0.92703 0.90895 0.90938 0.88052 0.74219 0.92753 0.93717 0.89077 0.92826 0.89965 0.90369 0.91552 0.93872 0.89713 0.95959 0.77562 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.75 8.37 71.98 0.60 -3.15 16 2 C 0.12 2.45 1.13 -10.79 -0.01 2.44 16 3 C -0.18 -3.75 8.37 71.98 0.60 -3.15 16 4 C -0.13 -1.57 8.85 71.98 0.64 -0.93 16 5 O -0.36 -8.54 9.94 -55.48 -0.55 -9.09 16 6 C 0.64 18.29 8.06 129.79 1.05 19.34 16 7 O -0.60 -21.74 11.88 19.82 0.24 -21.50 16 8 N -0.69 -16.19 5.29 -590.85 -3.12 -19.32 16 9 C 0.15 4.48 4.83 86.38 0.42 4.89 16 10 C -0.08 -2.07 2.02 -10.80 -0.02 -2.10 16 11 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 12 C -0.11 -2.19 4.90 30.59 0.15 -2.04 16 13 C -0.11 -1.93 5.92 30.59 0.18 -1.75 16 14 C -0.11 -3.04 5.76 30.59 0.18 -2.86 16 15 C -0.12 -4.00 5.60 30.58 0.17 -3.83 16 16 C 0.16 5.85 2.23 44.98 0.10 5.96 16 17 H 0.04 1.72 7.58 -2.39 -0.02 1.70 16 18 N -0.74 -32.47 3.61 -446.91 -1.61 -34.08 16 19 C 0.54 31.71 7.71 86.36 0.67 32.37 16 20 O -0.63 -42.53 14.68 -4.30 -0.06 -42.59 16 21 C -0.58 -33.47 9.54 24.83 0.24 -33.23 16 22 H 0.08 4.29 7.85 -2.91 -0.02 4.26 16 23 C 0.03 1.73 5.50 85.30 0.47 2.20 16 24 N -0.82 -51.62 11.83 21.84 0.26 -51.36 16 25 Si 0.99 42.47 29.56 68.60 2.03 44.50 16 26 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 28 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.56 5.88 -2.39 -0.01 1.55 16 31 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 1.55 5.88 -2.39 -0.01 1.53 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.42 6.79 7.76 -92.71 -0.72 6.07 16 39 H 0.05 1.87 7.61 -2.39 -0.02 1.85 16 40 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 41 H 0.09 1.28 7.18 -2.39 -0.02 1.26 16 42 H 0.05 1.25 6.51 -2.39 -0.02 1.23 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.04 1.37 7.60 -2.39 -0.02 1.35 16 47 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 49 H 0.39 15.20 6.65 -92.71 -0.62 14.58 16 50 H 0.27 15.60 8.29 -92.71 -0.77 14.84 16 Total: -1.00 -82.83 389.68 2.20 -80.63 By element: Atomic # 1 Polarization: 39.03 SS G_CDS: -0.39 Total: 38.64 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 5.42 Total: 14.17 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -4.48 Total: -104.76 kcal Atomic # 8 Polarization: -72.81 SS G_CDS: -0.38 Total: -73.18 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -82.83 2.20 -80.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187282883.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.746 kcal (2) G-P(sol) polarization free energy of solvation -82.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds