Wall clock time and date at job start Sat Apr 11 2020 01:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47152 * 2 1 4 4 N 1.46501 * 109.47245 * 180.02562 * 3 2 1 5 5 C 1.34522 * 126.69094 * 90.02445 * 4 3 2 6 6 O 1.21540 * 123.76784 * 359.97065 * 5 4 3 7 7 N 1.33786 * 112.45774 * 179.97438 * 5 4 3 8 8 C 1.46507 * 124.17462 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47485 * 90.02747 * 8 7 5 10 10 C 1.53006 * 109.47223 * 59.99555 * 9 8 7 11 11 C 1.52999 * 109.46961 * 300.00204 * 9 8 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 9 8 7 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 9 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 9 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 9 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.34763 * 111.64763 * 0.23599 * 7 5 4 22 22 O 1.21237 * 127.15871 * 179.73944 * 21 7 5 23 23 C 1.47311 * 126.68928 * 269.98693 * 4 3 2 24 24 H 1.08994 * 110.60045 * 298.71569 * 23 4 3 25 25 C 1.53002 * 110.60036 * 61.50994 * 23 4 3 26 26 O 1.42895 * 109.47292 * 64.99786 * 25 23 4 27 27 C 1.42898 * 113.99916 * 180.02562 * 26 25 23 28 28 H 1.08996 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47007 * 299.99832 * 1 2 3 30 30 H 1.09001 * 109.47538 * 59.99557 * 1 2 3 31 31 H 1.09001 * 109.46689 * 240.00527 * 2 1 3 32 32 H 1.08995 * 109.47255 * 120.00147 * 2 1 3 33 33 H 1.09001 * 109.46893 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47261 * 300.00613 * 3 2 1 35 35 H 1.09002 * 109.47280 * 330.02451 * 8 7 5 36 36 H 1.09001 * 109.46702 * 210.02644 * 8 7 5 37 37 H 1.08993 * 109.46955 * 180.02562 * 10 9 8 38 38 H 1.09000 * 109.47050 * 300.00346 * 10 9 8 39 39 H 1.09001 * 109.47002 * 60.00080 * 10 9 8 40 40 H 1.09002 * 109.46716 * 299.99630 * 11 9 8 41 41 H 1.09000 * 109.47486 * 59.99547 * 11 9 8 42 42 H 1.09001 * 109.47362 * 180.02562 * 11 9 8 43 43 H 1.09002 * 109.47153 * 59.99783 * 12 9 8 44 44 H 1.09001 * 109.46832 * 299.99974 * 12 9 8 45 45 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 46 46 H 1.09002 * 109.46963 * 185.00049 * 25 23 4 47 47 H 1.09001 * 109.46806 * 304.99898 * 25 23 4 48 48 H 1.08998 * 109.47389 * 60.00031 * 27 26 25 49 49 H 1.09001 * 109.47455 * 179.97438 * 27 26 25 50 50 H 1.08999 * 109.47334 * 299.99685 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3083 1.4432 -1.0796 6 8 3.9013 1.4433 -2.2249 7 7 5.6053 1.4436 -0.7513 8 6 6.7006 1.4437 -1.7243 9 6 7.0820 2.8862 -2.0627 10 6 7.5304 3.6072 -0.7898 11 6 5.8711 3.6077 -2.6577 12 6 8.2262 2.8864 -3.0783 13 6 8.6014 4.3072 -3.4121 14 1 8.0766 5.1281 -2.9461 15 6 9.6156 4.5593 -4.3116 16 7 10.2550 3.5598 -4.8787 17 14 10.0811 6.3205 -4.7248 18 1 10.5154 7.0206 -3.4892 19 1 11.1917 6.3206 -5.7107 20 1 8.9061 7.0205 -5.3034 21 6 5.7797 1.4381 0.5850 22 8 6.8326 1.4326 1.1860 23 6 4.3857 1.4427 1.1803 24 1 4.2220 2.3375 1.7807 25 6 4.1599 0.1840 2.0203 26 8 4.5546 -0.9665 1.2703 27 6 4.3827 -2.2019 1.9675 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.6768 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 6.3811 0.9301 -2.6311 36 1 7.5632 0.9298 -1.3003 37 1 7.8016 4.6350 -1.0309 38 1 6.7154 3.6071 -0.0660 39 1 8.3930 3.0933 -0.3658 40 1 5.5516 3.0940 -3.5645 41 1 5.0561 3.6075 -1.9338 42 1 6.1429 4.6352 -2.8993 43 1 7.9072 2.3726 -3.9852 44 1 9.0888 2.3725 -2.6539 45 1 10.9682 3.7371 -5.5118 46 1 4.7538 0.2445 2.9323 47 1 3.1040 0.1044 2.2789 48 1 3.3314 -2.3308 2.2247 49 1 4.7044 -3.0262 1.3310 50 1 4.9810 -2.1912 2.8786 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348962654.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:45:19 Heat of formation + Delta-G solvation = -119.828457 kcal Electronic energy + Delta-G solvation = -30349.398980 eV Core-core repulsion = 26376.778189 eV Total energy + Delta-G solvation = -3972.620791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.53390 -39.69050 -39.33912 -38.37376 -37.20781 -36.32634 -34.68818 -33.74890 -31.09783 -29.46139 -28.69612 -28.11534 -27.33389 -26.80014 -25.38665 -24.80895 -22.88537 -22.39020 -21.41038 -19.84195 -18.56389 -18.45233 -18.04167 -17.71378 -17.22026 -17.03652 -16.54539 -16.21712 -16.07498 -15.91303 -15.56198 -15.48546 -15.29940 -15.05224 -14.58277 -14.47416 -14.12503 -13.99528 -13.57787 -13.56101 -13.29593 -13.00620 -12.82273 -12.80502 -12.74289 -12.62302 -12.57782 -12.39135 -12.30039 -12.16597 -12.15505 -11.94516 -11.53996 -11.53114 -11.33475 -11.12766 -11.01403 -10.64671 -10.51767 -10.48046 -9.92677 -8.15101 -6.22890 0.68689 1.12277 1.40538 1.43353 1.50572 2.00633 2.05335 2.43578 2.67217 2.99784 3.18648 3.67517 3.76200 3.93783 3.95484 4.08076 4.11281 4.14948 4.29412 4.36041 4.40321 4.42800 4.45477 4.50646 4.55426 4.61841 4.67006 4.69082 4.71150 4.80226 4.87048 4.95157 5.00123 5.01843 5.11357 5.24622 5.32540 5.34152 5.38271 5.39321 5.42923 5.50277 5.59788 5.73954 5.85922 6.13275 6.20764 6.28960 6.44851 6.89472 7.11839 7.44008 8.97214 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019986 B = 0.003318 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.646394 B = 8436.318845 C = 9085.879805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.145 3.855 4 N -0.609 5.609 5 C 0.698 3.302 6 O -0.577 6.577 7 N -0.571 5.571 8 C 0.137 3.863 9 C -0.070 4.070 10 C -0.106 4.106 11 C -0.102 4.102 12 C 0.047 3.953 13 C -0.518 4.518 14 H 0.066 0.934 15 C -0.001 4.001 16 N -0.935 5.935 17 Si 0.959 3.041 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.269 1.269 21 C 0.528 3.472 22 O -0.494 6.494 23 C 0.099 3.901 24 H 0.179 0.821 25 C 0.062 3.938 26 O -0.419 6.419 27 C 0.032 3.968 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.043 0.957 39 H 0.040 0.960 40 H 0.034 0.966 41 H 0.041 0.959 42 H 0.051 0.949 43 H -0.011 1.011 44 H -0.007 1.007 45 H 0.261 0.739 46 H 0.089 0.911 47 H 0.104 0.896 48 H 0.063 0.937 49 H 0.080 0.920 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.502 -8.005 20.022 30.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.026 3.974 4 N -0.347 5.347 5 C 0.401 3.599 6 O -0.453 6.453 7 N -0.314 5.314 8 C 0.015 3.985 9 C -0.071 4.071 10 C -0.164 4.164 11 C -0.159 4.159 12 C 0.009 3.991 13 C -0.556 4.556 14 H 0.084 0.916 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.784 3.216 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.194 1.194 21 C 0.316 3.684 22 O -0.366 6.366 23 C -0.008 4.008 24 H 0.195 0.805 25 C -0.015 4.015 26 O -0.339 6.339 27 C -0.064 4.064 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.146 0.854 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.008 0.992 44 H 0.011 0.989 45 H 0.070 0.930 46 H 0.107 0.893 47 H 0.122 0.878 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.042 -8.038 19.391 29.722 hybrid contribution 0.939 0.387 -0.843 1.320 sum -20.103 -7.652 18.548 28.402 Atomic orbital electron populations 1.21671 0.93329 1.02472 1.02765 1.21940 0.97228 0.96318 1.01991 1.21722 0.72501 0.98034 1.05170 1.47812 1.06797 1.76201 1.03858 1.16020 0.80958 0.77234 0.85677 1.90941 1.77410 1.56497 1.20444 1.46390 1.07972 1.67482 1.09534 1.21640 0.87381 0.98325 0.91158 1.20863 0.96557 0.92965 0.96673 1.21559 0.99296 1.00499 0.95004 1.21508 0.95302 1.00125 0.98962 1.18897 0.91630 0.96320 0.92248 1.21502 1.17064 0.93072 1.24004 0.91643 1.25912 0.96500 1.01230 0.96223 1.70098 1.24303 1.32984 1.30229 0.85598 0.77846 0.80034 0.78171 1.19166 1.21164 1.19369 1.21165 0.92095 0.73270 0.81845 1.90774 1.32068 1.47226 1.66502 1.22579 0.85273 1.03280 0.89658 0.80459 1.22881 1.02656 0.82646 0.93288 1.87941 1.87029 1.15659 1.43271 1.22853 1.01445 0.84744 0.97351 0.92234 0.90377 0.93014 0.94704 0.90527 0.85438 0.90536 0.90442 0.89822 0.92768 0.93842 0.94099 0.94660 0.94044 0.93014 0.99223 0.98899 0.93007 0.89272 0.87809 0.91891 0.90112 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.91 71.98 0.71 -0.60 16 2 C -0.14 -1.83 6.12 30.60 0.19 -1.64 16 3 C 0.15 2.03 5.88 86.38 0.51 2.54 16 4 N -0.61 -12.84 2.71 -817.78 -2.22 -15.06 16 5 C 0.70 22.42 6.74 179.44 1.21 23.63 16 6 O -0.58 -22.77 15.99 -3.84 -0.06 -22.83 16 7 N -0.57 -19.21 2.12 -773.13 -1.64 -20.85 16 8 C 0.14 5.45 4.73 86.38 0.41 5.86 16 9 C -0.07 -3.06 0.60 -52.18 -0.03 -3.09 16 10 C -0.11 -4.36 7.25 71.98 0.52 -3.84 16 11 C -0.10 -4.35 7.10 71.98 0.51 -3.84 16 12 C 0.05 2.53 4.04 29.85 0.12 2.65 16 13 C -0.52 -29.58 7.65 25.60 0.20 -29.38 16 14 H 0.07 3.57 5.68 -2.91 -0.02 3.56 16 15 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 16 N -0.94 -58.24 13.29 21.45 0.28 -57.95 16 17 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 21 C 0.53 15.30 5.39 87.94 0.47 15.78 16 22 O -0.49 -16.84 16.90 -2.90 -0.05 -16.89 16 23 C 0.10 1.73 3.89 44.37 0.17 1.90 16 24 H 0.18 1.69 8.14 -2.39 -0.02 1.67 16 25 C 0.06 0.80 5.19 71.98 0.37 1.17 16 26 O -0.42 -8.27 10.03 -148.98 -1.49 -9.77 16 27 C 0.03 0.40 11.01 113.37 1.25 1.65 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.84 6.13 -2.39 -0.01 0.83 16 33 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 1.33 8.03 -2.39 -0.02 1.31 16 35 H 0.08 3.24 7.86 -2.39 -0.02 3.23 16 36 H 0.08 3.37 8.00 -2.39 -0.02 3.35 16 37 H 0.05 2.31 6.62 -2.39 -0.02 2.30 16 38 H 0.04 1.56 6.21 -2.39 -0.01 1.54 16 39 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.03 1.59 8.10 -2.39 -0.02 1.58 16 41 H 0.04 1.60 6.18 -2.39 -0.01 1.58 16 42 H 0.05 2.28 6.62 -2.39 -0.02 2.26 16 43 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 44 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 45 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 46 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.10 0.63 6.54 -2.39 -0.02 0.61 16 48 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -78.40 392.97 4.83 -73.56 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.91 Total: 9.26 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 7.07 Total: 13.16 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -3.58 Total: -93.86 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -1.60 Total: -49.49 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -78.40 4.83 -73.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348962654.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.267 kcal (2) G-P(sol) polarization free energy of solvation -78.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds