Wall clock time and date at job start Sat Apr 11 2020 01:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47254 * 2 1 4 4 H 1.08997 * 109.47256 * 305.00094 * 3 2 1 5 5 C 1.50698 * 109.47406 * 184.99856 * 3 2 1 6 6 H 1.07998 * 120.00193 * 240.00889 * 5 3 2 7 7 C 1.37882 * 119.99865 * 59.99818 * 5 3 2 8 8 N 1.31512 * 119.99942 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99860 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47069 * 60.00770 * 9 7 5 11 11 H 1.48505 * 109.46841 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47336 * 300.00269 * 9 7 5 13 13 N 1.46505 * 109.47211 * 64.99986 * 3 2 1 14 14 C 1.34777 * 119.99900 * 275.00075 * 13 3 2 15 15 O 1.21272 * 120.00075 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99754 * 179.97438 * 14 13 3 17 17 H 1.08992 * 109.51384 * 304.90078 * 16 14 13 18 18 C 1.53300 * 109.50758 * 65.00451 * 16 14 13 19 19 N 1.47158 * 108.38182 * 172.22422 * 18 16 14 20 20 C 1.34777 * 120.98045 * 129.43903 * 19 18 16 21 21 O 1.21282 * 120.00169 * 354.31694 * 20 19 18 22 22 C 1.50703 * 119.99933 * 174.31275 * 20 19 18 23 23 C 1.52993 * 109.47019 * 188.98362 * 22 20 19 24 24 C 1.53001 * 109.46773 * 68.98016 * 22 20 19 25 25 C 1.52999 * 109.46918 * 308.98573 * 22 20 19 26 26 C 1.47150 * 118.03285 * 309.71161 * 19 18 16 27 27 C 1.52874 * 108.60889 * 50.23194 * 26 19 18 28 28 O 1.42961 * 109.50956 * 184.74416 * 16 14 13 29 29 H 1.08993 * 109.47435 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47061 * 300.00258 * 1 2 3 31 31 H 1.09000 * 109.47009 * 59.99707 * 1 2 3 32 32 H 1.08997 * 109.46913 * 240.00263 * 2 1 3 33 33 H 1.09000 * 109.47009 * 120.00293 * 2 1 3 34 34 H 0.96995 * 120.00473 * 180.02562 * 8 7 5 35 35 H 0.97006 * 119.99821 * 94.99489 * 13 3 2 36 36 H 1.08995 * 109.68617 * 52.50174 * 18 16 14 37 37 H 1.09003 * 109.67836 * 291.94207 * 18 16 14 38 38 H 1.09003 * 109.47102 * 299.99579 * 23 22 20 39 39 H 1.08997 * 109.47633 * 60.00357 * 23 22 20 40 40 H 1.09005 * 109.46862 * 180.02562 * 23 22 20 41 41 H 1.08997 * 109.47001 * 189.39618 * 24 22 20 42 42 H 1.08998 * 109.47822 * 309.40138 * 24 22 20 43 43 H 1.08999 * 109.46864 * 69.40187 * 24 22 20 44 44 H 1.08999 * 109.47371 * 317.92921 * 25 22 20 45 45 H 1.08997 * 109.47465 * 77.93187 * 25 22 20 46 46 H 1.08999 * 109.46827 * 197.93031 * 25 22 20 47 47 H 1.09004 * 109.67491 * 170.00955 * 26 19 18 48 48 H 1.08992 * 109.68329 * 290.56241 * 26 19 18 49 49 H 1.08998 * 109.58758 * 187.92234 * 27 26 19 50 50 H 1.08999 * 109.41502 * 67.83897 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8887 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3374 -2.1733 9 14 6.0050 0.8800 -1.3810 10 1 6.5966 0.1450 -0.2342 11 1 6.3978 0.2166 -2.6503 12 1 6.5005 2.2798 -1.3807 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3391 2.6327 0.4342 16 6 0.0364 3.3377 2.6549 17 1 0.1506 2.6375 3.4823 18 6 0.9303 4.5604 2.8915 19 7 0.4037 5.3034 4.0475 20 6 1.2097 5.6648 5.0655 21 8 2.3630 5.2904 5.0882 22 6 0.6778 6.5343 6.1755 23 6 1.8339 6.9790 7.0735 24 6 -0.3354 5.7413 7.0035 25 6 -0.0053 7.7653 5.5763 26 6 -1.0299 5.6348 4.0619 27 6 -1.8272 4.3645 3.7657 28 8 -1.3267 3.7605 2.5704 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8293 -0.0611 -2.9498 35 1 2.2720 2.1230 1.9979 36 1 0.9196 5.1994 2.0086 37 1 1.9500 4.2351 3.0978 38 1 2.3204 6.1020 7.5004 39 1 2.5556 7.5440 6.4837 40 1 1.4490 7.6075 7.8767 41 1 -0.8417 6.4119 7.6976 42 1 -1.0690 5.2842 6.3395 43 1 0.1828 4.9627 7.5632 44 1 0.5955 8.1489 4.7517 45 1 -0.9935 7.4894 5.2083 46 1 -0.1045 8.5345 6.3421 47 1 -1.3075 6.0208 5.0427 48 1 -1.2412 6.3838 3.2988 49 1 -2.8795 4.6161 3.6333 50 1 -1.7213 3.6681 4.5974 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376927707.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:45:33 Heat of formation + Delta-G solvation = -107.435009 kcal Electronic energy + Delta-G solvation = -29813.171368 eV Core-core repulsion = 25841.087996 eV Total energy + Delta-G solvation = -3972.083371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.10215 -39.42487 -38.02677 -36.21357 -35.11192 -34.70891 -32.61150 -31.80091 -30.63139 -28.38117 -27.80071 -27.68933 -26.86522 -24.90603 -23.66185 -22.91962 -21.45089 -20.30006 -19.35750 -19.17340 -17.49820 -16.86222 -16.79131 -16.29478 -15.89836 -15.72488 -15.32794 -15.15854 -14.62525 -14.45464 -14.39705 -14.24216 -13.95142 -13.75375 -13.07873 -12.84158 -12.68392 -12.66212 -12.62466 -12.47397 -12.08386 -12.04067 -11.97128 -11.61570 -11.43180 -11.33642 -11.23332 -11.18779 -10.98752 -10.81615 -10.78592 -10.31815 -10.25935 -10.16351 -9.79833 -9.61387 -9.07012 -9.00736 -8.69456 -8.48297 -7.85280 -6.11027 -4.20522 2.41021 2.58958 3.24953 3.27893 3.30110 3.32957 3.36745 4.00252 4.27332 4.34894 4.41755 4.44868 4.52625 4.65361 4.74868 4.84308 4.92199 5.06534 5.09589 5.19398 5.20383 5.25796 5.30513 5.38346 5.44414 5.46547 5.47785 5.51318 5.61567 5.72218 5.78836 5.83784 5.95835 6.14983 6.40689 6.47312 6.67012 6.93160 7.05337 7.12150 7.21338 7.36228 7.42474 7.62991 7.73510 7.90238 7.94381 8.18235 8.62377 8.77901 9.08136 9.46523 10.94258 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015596 B = 0.003331 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.860050 B = 8404.655743 C = 9750.194418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.273 3.727 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.703 5.703 14 C 0.510 3.490 15 O -0.523 6.523 16 C 0.061 3.939 17 H 0.081 0.919 18 C 0.089 3.911 19 N -0.612 5.612 20 C 0.525 3.475 21 O -0.531 6.531 22 C -0.086 4.086 23 C -0.127 4.127 24 C -0.152 4.152 25 C -0.155 4.155 26 C 0.051 3.949 27 C 0.043 3.957 28 O -0.346 6.346 29 H 0.023 0.977 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.031 0.969 34 H 0.265 0.735 35 H 0.389 0.611 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.116 0.884 48 H 0.080 0.920 49 H 0.110 0.890 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 12.566 18.728 24.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.292 3.708 15 O -0.399 6.399 16 C -0.002 4.002 17 H 0.099 0.901 18 C -0.034 4.034 19 N -0.347 5.347 20 C 0.313 3.687 21 O -0.407 6.407 22 C -0.089 4.089 23 C -0.184 4.184 24 C -0.209 4.209 25 C -0.212 4.212 26 C -0.072 4.072 27 C -0.035 4.035 28 O -0.263 6.263 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.221 0.779 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.133 0.867 48 H 0.099 0.901 49 H 0.128 0.872 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.904 12.207 17.670 23.650 hybrid contribution 1.359 0.009 0.471 1.438 sum -8.545 12.217 18.141 23.481 Atomic orbital electron populations 1.21843 0.98301 0.98104 1.01249 1.21949 0.92622 0.99760 1.02375 1.18817 0.94261 0.89153 0.80605 0.93164 1.21195 0.90607 1.39198 1.06370 0.92028 1.24872 0.98613 0.94755 0.95340 1.69880 1.35238 1.37506 1.09333 0.86511 0.84837 0.78361 0.77428 1.20133 1.21147 1.20157 1.46480 1.14003 1.55923 1.18902 1.19627 0.83332 0.79994 0.87821 1.90702 1.51008 1.58712 1.39448 1.22426 0.83685 0.95592 0.98495 0.90103 1.22222 0.99301 0.93210 0.88639 1.48082 1.09125 1.56846 1.20598 1.20665 0.85654 0.80164 0.82242 1.90720 1.17866 1.55025 1.77078 1.20789 0.97996 0.95614 0.94488 1.21676 0.96483 1.01877 0.98398 1.22123 0.98297 1.00462 1.00035 1.22249 1.00961 0.96368 1.01586 1.23058 0.80660 0.98860 1.04590 1.22991 0.98627 0.93285 0.88584 1.88149 1.24867 1.78641 1.34642 0.95790 0.94359 0.93101 0.88183 0.94972 0.92490 0.77856 0.89805 0.87263 0.91637 0.91996 0.91941 0.91004 0.91387 0.91617 0.91923 0.90907 0.91302 0.86700 0.90145 0.87182 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.52 37.16 0.32 -2.80 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.86 2.24 -69.08 -0.15 6.70 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -14.16 8.73 -34.44 -0.30 -14.46 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.74 11.29 55.43 0.63 -24.11 16 9 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 13 N -0.70 -14.58 4.99 -54.93 -0.27 -14.85 16 14 C 0.51 10.22 5.75 -10.98 -0.06 10.16 16 15 O -0.52 -12.48 13.65 -14.27 -0.19 -12.68 16 16 C 0.06 0.94 3.19 -27.73 -0.09 0.85 16 17 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 18 C 0.09 1.27 5.90 -3.53 -0.02 1.25 16 19 N -0.61 -7.09 3.01 -172.53 -0.52 -7.61 16 20 C 0.52 6.40 6.40 -10.98 -0.07 6.33 16 21 O -0.53 -8.59 15.45 5.56 0.09 -8.51 16 22 C -0.09 -0.70 0.75 -155.66 -0.12 -0.82 16 23 C -0.13 -1.06 7.72 37.15 0.29 -0.77 16 24 C -0.15 -0.94 8.12 37.16 0.30 -0.63 16 25 C -0.15 -0.97 7.91 37.16 0.29 -0.68 16 26 C 0.05 0.43 4.26 -3.75 -0.02 0.41 16 27 C 0.04 0.41 6.96 37.09 0.26 0.67 16 28 O -0.35 -5.24 9.92 -55.07 -0.55 -5.78 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.85 5.65 -51.93 -0.29 0.55 16 31 H 0.05 1.22 7.85 -51.93 -0.41 0.82 16 32 H 0.10 2.69 5.95 -51.93 -0.31 2.39 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.39 7.15 8.54 -40.82 -0.35 6.80 16 36 H 0.08 1.26 8.13 -51.93 -0.42 0.83 16 37 H 0.11 1.65 7.06 -51.93 -0.37 1.29 16 38 H 0.06 0.62 8.00 -51.93 -0.42 0.21 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 42 H 0.07 0.38 5.26 -51.93 -0.27 0.10 16 43 H 0.06 0.46 8.12 -51.93 -0.42 0.03 16 44 H 0.06 0.48 8.01 -51.93 -0.42 0.06 16 45 H 0.07 0.35 5.03 -51.93 -0.26 0.09 16 46 H 0.07 0.33 8.01 -51.93 -0.42 -0.08 16 47 H 0.12 0.65 2.52 -51.93 -0.13 0.52 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 381.35 15.07 5.75 5.75 Total: -1.00 -33.10 381.35 -7.93 -41.03 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -8.22 Total: 6.33 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 0.39 Total: 4.65 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.17 Total: -46.57 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.66 Total: -26.97 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.10 -7.93 -41.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376927707.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.409 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds