Wall clock time and date at job start Sat Apr 11 2020 01:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47254 * 2 1 4 4 H 1.08997 * 109.47256 * 305.00094 * 3 2 1 5 5 C 1.50698 * 109.47406 * 184.99856 * 3 2 1 6 6 H 1.07998 * 120.00193 * 240.00889 * 5 3 2 7 7 C 1.37882 * 119.99865 * 59.99818 * 5 3 2 8 8 N 1.31512 * 119.99942 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99860 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47069 * 60.00770 * 9 7 5 11 11 H 1.48505 * 109.46841 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47336 * 300.00269 * 9 7 5 13 13 N 1.46505 * 109.47211 * 64.99986 * 3 2 1 14 14 C 1.34777 * 119.99900 * 275.00075 * 13 3 2 15 15 O 1.21272 * 120.00075 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99754 * 179.97438 * 14 13 3 17 17 H 1.08992 * 109.51384 * 304.90078 * 16 14 13 18 18 C 1.53300 * 109.50758 * 65.00451 * 16 14 13 19 19 N 1.47158 * 108.38182 * 172.22422 * 18 16 14 20 20 C 1.34777 * 120.98045 * 129.43903 * 19 18 16 21 21 O 1.21282 * 120.00169 * 354.31694 * 20 19 18 22 22 C 1.50703 * 119.99933 * 174.31275 * 20 19 18 23 23 C 1.52993 * 109.47019 * 188.98362 * 22 20 19 24 24 C 1.53001 * 109.46773 * 68.98016 * 22 20 19 25 25 C 1.52999 * 109.46918 * 308.98573 * 22 20 19 26 26 C 1.47150 * 118.03285 * 309.71161 * 19 18 16 27 27 C 1.52874 * 108.60889 * 50.23194 * 26 19 18 28 28 O 1.42961 * 109.50956 * 184.74416 * 16 14 13 29 29 H 1.08993 * 109.47435 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47061 * 300.00258 * 1 2 3 31 31 H 1.09000 * 109.47009 * 59.99707 * 1 2 3 32 32 H 1.08997 * 109.46913 * 240.00263 * 2 1 3 33 33 H 1.09000 * 109.47009 * 120.00293 * 2 1 3 34 34 H 0.96995 * 120.00473 * 180.02562 * 8 7 5 35 35 H 0.97006 * 119.99821 * 94.99489 * 13 3 2 36 36 H 1.08995 * 109.68617 * 52.50174 * 18 16 14 37 37 H 1.09003 * 109.67836 * 291.94207 * 18 16 14 38 38 H 1.09003 * 109.47102 * 299.99579 * 23 22 20 39 39 H 1.08997 * 109.47633 * 60.00357 * 23 22 20 40 40 H 1.09005 * 109.46862 * 180.02562 * 23 22 20 41 41 H 1.08997 * 109.47001 * 189.39618 * 24 22 20 42 42 H 1.08998 * 109.47822 * 309.40138 * 24 22 20 43 43 H 1.08999 * 109.46864 * 69.40187 * 24 22 20 44 44 H 1.08999 * 109.47371 * 317.92921 * 25 22 20 45 45 H 1.08997 * 109.47465 * 77.93187 * 25 22 20 46 46 H 1.08999 * 109.46827 * 197.93031 * 25 22 20 47 47 H 1.09004 * 109.67491 * 170.00955 * 26 19 18 48 48 H 1.08992 * 109.68329 * 290.56241 * 26 19 18 49 49 H 1.08998 * 109.58758 * 187.92234 * 27 26 19 50 50 H 1.08999 * 109.41502 * 67.83897 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8887 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3374 -2.1733 9 14 6.0050 0.8800 -1.3810 10 1 6.5966 0.1450 -0.2342 11 1 6.3978 0.2166 -2.6503 12 1 6.5005 2.2798 -1.3807 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3391 2.6327 0.4342 16 6 0.0364 3.3377 2.6549 17 1 0.1506 2.6375 3.4823 18 6 0.9303 4.5604 2.8915 19 7 0.4037 5.3034 4.0475 20 6 1.2097 5.6648 5.0655 21 8 2.3630 5.2904 5.0882 22 6 0.6778 6.5343 6.1755 23 6 1.8339 6.9790 7.0735 24 6 -0.3354 5.7413 7.0035 25 6 -0.0053 7.7653 5.5763 26 6 -1.0299 5.6348 4.0619 27 6 -1.8272 4.3645 3.7657 28 8 -1.3267 3.7605 2.5704 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8293 -0.0611 -2.9498 35 1 2.2720 2.1230 1.9979 36 1 0.9196 5.1994 2.0086 37 1 1.9500 4.2351 3.0978 38 1 2.3204 6.1020 7.5004 39 1 2.5556 7.5440 6.4837 40 1 1.4490 7.6075 7.8767 41 1 -0.8417 6.4119 7.6976 42 1 -1.0690 5.2842 6.3395 43 1 0.1828 4.9627 7.5632 44 1 0.5955 8.1489 4.7517 45 1 -0.9935 7.4894 5.2083 46 1 -0.1045 8.5345 6.3421 47 1 -1.3075 6.0208 5.0427 48 1 -1.2412 6.3838 3.2988 49 1 -2.8795 4.6161 3.6333 50 1 -1.7213 3.6681 4.5974 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376927707.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:45:32 Heat of formation + Delta-G solvation = -130.218284 kcal Electronic energy + Delta-G solvation = -29814.159325 eV Core-core repulsion = 25841.087996 eV Total energy + Delta-G solvation = -3973.071328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.06630 -40.85092 -39.29007 -37.06641 -36.87905 -35.77153 -34.41409 -33.36215 -32.15499 -29.55414 -28.74387 -28.26143 -28.24289 -26.12258 -24.94570 -24.38194 -22.54574 -21.83606 -21.16301 -20.07452 -19.09141 -18.01222 -17.89815 -17.38730 -17.22283 -17.02860 -16.80128 -16.38277 -16.07732 -15.70575 -15.39719 -15.25525 -15.14846 -14.87496 -14.60228 -14.08750 -14.01499 -13.81901 -13.51142 -13.28990 -13.17981 -13.16703 -13.09777 -12.94113 -12.77115 -12.74210 -12.67062 -12.49149 -12.20050 -12.09123 -12.03866 -11.91894 -11.62443 -11.55302 -11.21236 -11.09242 -10.82165 -10.59011 -10.49008 -9.77207 -9.66979 -8.17696 -6.34998 1.43367 1.45088 1.46486 1.52754 1.55008 1.84582 1.97217 2.41408 3.06623 3.12162 3.28211 3.49600 3.69890 3.76660 3.85279 3.87647 3.95730 4.10858 4.16734 4.24524 4.33569 4.47608 4.52915 4.55679 4.63413 4.69427 4.71444 4.73985 4.78433 4.83143 4.92612 4.95833 5.04055 5.04861 5.14734 5.23679 5.24694 5.34251 5.39325 5.41567 5.51533 5.57709 5.75026 5.84524 6.00947 6.14494 6.23958 6.71430 6.88534 7.01131 7.29917 7.47069 8.87461 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015596 B = 0.003331 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.860050 B = 8404.655743 C = 9750.194418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.281 3.719 4 H 0.002 0.998 5 C -0.551 4.551 6 H 0.069 0.931 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.700 5.700 14 C 0.507 3.493 15 O -0.564 6.564 16 C 0.080 3.920 17 H 0.099 0.901 18 C 0.095 3.905 19 N -0.609 5.609 20 C 0.517 3.483 21 O -0.580 6.580 22 C -0.081 4.081 23 C -0.127 4.127 24 C -0.150 4.150 25 C -0.152 4.152 26 C 0.050 3.950 27 C 0.035 3.965 28 O -0.375 6.375 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.150 0.850 48 H 0.087 0.913 49 H 0.141 0.859 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.038 13.755 21.557 27.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.019 0.981 5 C -0.589 4.589 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.292 3.708 15 O -0.443 6.443 16 C 0.017 3.983 17 H 0.117 0.883 18 C -0.029 4.029 19 N -0.343 5.343 20 C 0.307 3.693 21 O -0.459 6.459 22 C -0.084 4.084 23 C -0.184 4.184 24 C -0.207 4.207 25 C -0.209 4.209 26 C -0.071 4.071 27 C -0.042 4.042 28 O -0.293 6.293 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.236 0.764 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.167 0.833 48 H 0.105 0.895 49 H 0.159 0.841 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.079 13.421 20.547 26.927 hybrid contribution 1.646 -0.307 -0.397 1.721 sum -9.433 13.114 20.150 25.827 Atomic orbital electron populations 1.21673 0.96904 0.99271 1.00189 1.21796 0.93769 0.99008 1.01459 1.18402 0.93632 0.89241 0.80930 0.98060 1.21527 0.91390 1.39230 1.06789 0.91327 1.25719 1.03180 0.94303 0.94956 1.70025 1.37083 1.38141 1.09801 0.85462 0.79257 0.78393 0.77616 1.19051 1.20903 1.19866 1.46241 1.14929 1.55902 1.17942 1.20409 0.82257 0.79063 0.89095 1.90676 1.52067 1.60105 1.41464 1.22074 0.84694 0.95912 0.95572 0.88327 1.21929 0.98576 0.92944 0.89483 1.48168 1.10583 1.56071 1.19447 1.21574 0.85076 0.79815 0.82798 1.90694 1.20092 1.56930 1.78220 1.20876 0.98546 0.95863 0.93139 1.21697 0.96366 1.01389 0.98980 1.22156 0.97709 1.00583 1.00255 1.22274 1.01147 0.95822 1.01685 1.23345 0.78294 0.98658 1.06806 1.23408 1.00088 0.93606 0.87090 1.88110 1.24022 1.79340 1.37862 0.93358 0.94034 0.95476 0.90750 0.93996 0.92485 0.76383 0.91172 0.88600 0.93398 0.93764 0.88947 0.88078 0.90454 0.92621 0.93652 0.89043 0.89018 0.83284 0.89505 0.84131 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.52 71.98 0.61 -5.05 16 2 C -0.12 -6.08 5.45 30.59 0.17 -5.91 16 3 C 0.28 14.67 2.24 44.24 0.10 14.77 16 4 H 0.00 0.09 7.58 -2.39 -0.02 0.08 16 5 C -0.55 -29.80 8.73 25.60 0.22 -29.58 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 1.03 5.29 84.66 0.45 1.48 16 8 N -0.91 -52.64 11.29 21.45 0.24 -52.40 16 9 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 N -0.70 -29.86 4.99 -446.11 -2.22 -32.08 16 14 C 0.51 20.83 5.75 87.66 0.50 21.34 16 15 O -0.56 -27.95 13.65 15.96 0.22 -27.74 16 16 C 0.08 2.44 3.19 29.95 0.10 2.53 16 17 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 18 C 0.09 2.72 5.90 86.35 0.51 3.23 16 19 N -0.61 -13.31 3.01 -818.15 -2.46 -15.77 16 20 C 0.52 12.15 6.40 87.66 0.56 12.71 16 21 O -0.58 -19.13 15.45 -3.04 -0.05 -19.18 16 22 C -0.08 -1.13 0.75 -52.93 -0.04 -1.17 16 23 C -0.13 -1.92 7.72 71.98 0.56 -1.37 16 24 C -0.15 -1.27 8.12 71.98 0.58 -0.68 16 25 C -0.15 -1.38 7.91 71.98 0.57 -0.81 16 26 C 0.05 0.68 4.26 86.21 0.37 1.05 16 27 C 0.03 0.55 6.96 71.94 0.50 1.05 16 28 O -0.38 -10.88 9.92 -130.01 -1.29 -12.17 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.04 1.85 5.65 -2.39 -0.01 1.84 16 31 H 0.03 1.34 7.85 -2.39 -0.02 1.32 16 32 H 0.07 4.14 5.95 -2.39 -0.01 4.13 16 33 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 35 H 0.40 15.04 8.54 -92.70 -0.79 14.25 16 36 H 0.07 2.18 8.13 -2.39 -0.02 2.16 16 37 H 0.10 3.00 7.06 -2.39 -0.02 2.98 16 38 H 0.05 0.89 8.00 -2.39 -0.02 0.87 16 39 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.10 0.32 8.12 -2.39 -0.02 0.30 16 42 H 0.08 0.50 5.26 -2.39 -0.01 0.49 16 43 H 0.05 0.62 8.12 -2.39 -0.02 0.60 16 44 H 0.04 0.59 8.01 -2.39 -0.02 0.57 16 45 H 0.09 0.46 5.03 -2.39 -0.01 0.45 16 46 H 0.09 0.47 8.01 -2.39 -0.02 0.45 16 47 H 0.15 0.99 2.52 -2.39 -0.01 0.99 16 48 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -76.35 381.35 2.38 -73.98 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.15 Total: 26.74 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 5.76 Total: 13.58 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -4.44 Total: -100.25 kcal Atomic # 8 Polarization: -57.96 SS G_CDS: -1.12 Total: -59.08 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -76.35 2.38 -73.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376927707.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.242 kcal (2) G-P(sol) polarization free energy of solvation -76.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds