Wall clock time and date at job start Sat Apr 11 2020 01:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 110.42017 * 2 1 4 4 C 1.54907 * 110.37409 * 237.68855 * 2 1 3 5 5 C 1.55132 * 101.65423 * 204.10379 * 4 2 1 6 6 C 1.54319 * 103.01867 * 35.65170 * 5 4 2 7 7 H 1.09002 * 109.89008 * 97.12659 * 6 5 4 8 8 C 1.53009 * 110.02337 * 218.23606 * 6 5 4 9 9 N 1.47440 * 107.23637 * 337.71753 * 6 5 4 10 10 C 1.46896 * 111.00478 * 236.74260 * 9 6 5 11 11 H 1.09002 * 109.49910 * 38.88343 * 10 9 6 12 12 C 1.53120 * 109.50769 * 159.00193 * 10 9 6 13 13 C 1.53117 * 109.16191 * 177.59429 * 12 10 9 14 14 C 1.53036 * 109.28021 * 302.35104 * 13 12 10 15 15 N 1.46840 * 109.52509 * 59.17587 * 14 13 12 16 16 C 1.46902 * 111.00209 * 174.16323 * 15 14 13 17 17 C 1.53002 * 109.46853 * 294.21372 * 16 15 14 18 18 C 1.53004 * 109.47288 * 179.97438 * 17 16 15 19 19 S 1.80994 * 109.47073 * 179.97438 * 18 17 16 20 20 C 1.76202 * 99.99825 * 179.97438 * 19 18 17 21 21 H 1.08004 * 120.00052 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00132 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00112 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00266 * 179.72488 * 22 20 19 25 25 H 1.48510 * 109.46874 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47285 * 119.99710 * 24 22 20 27 27 H 1.48492 * 109.47377 * 240.00221 * 24 22 20 28 28 C 1.46845 * 111.20065 * 298.25852 * 15 14 13 29 29 H 1.08993 * 109.47241 * 304.16887 * 1 2 3 30 30 H 1.09005 * 109.46684 * 64.16506 * 1 2 3 31 31 H 1.09001 * 109.47132 * 184.16091 * 1 2 3 32 32 H 1.09004 * 110.99210 * 86.00596 * 4 2 1 33 33 H 1.09009 * 111.02221 * 322.21026 * 4 2 1 34 34 H 1.09001 * 110.70665 * 277.27280 * 5 4 2 35 35 H 1.08999 * 110.70937 * 154.03451 * 5 4 2 36 36 H 1.09000 * 109.46759 * 176.62115 * 8 6 5 37 37 H 1.09000 * 109.46724 * 296.61874 * 8 6 5 38 38 H 1.08998 * 109.46806 * 56.61879 * 8 6 5 39 39 H 1.08998 * 109.52259 * 297.50348 * 12 10 9 40 40 H 1.09005 * 109.51889 * 57.62477 * 12 10 9 41 41 H 1.09002 * 109.50013 * 62.28866 * 13 12 10 42 42 H 1.08992 * 109.49992 * 182.36638 * 13 12 10 43 43 H 1.09000 * 109.45748 * 299.15795 * 14 13 12 44 44 H 1.08997 * 109.46285 * 179.20042 * 14 13 12 45 45 H 1.08995 * 109.47238 * 174.21437 * 16 15 14 46 46 H 1.08995 * 109.47155 * 54.20674 * 16 15 14 47 47 H 1.08998 * 109.47264 * 59.99485 * 17 16 15 48 48 H 1.09003 * 109.47209 * 299.99856 * 17 16 15 49 49 H 1.08998 * 109.46485 * 59.99679 * 18 17 16 50 50 H 1.08995 * 109.46768 * 299.99964 * 18 17 16 51 51 H 0.96997 * 120.00095 * 180.02562 * 23 22 20 52 52 H 1.08998 * 109.46575 * 181.75480 * 28 15 14 53 53 H 1.08997 * 109.46595 * 301.72854 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 6 2.0694 -0.7762 -1.2273 5 6 3.4786 -1.1996 -0.7358 6 6 3.2535 -1.4808 0.7647 7 1 3.1055 -2.5489 0.9237 8 6 4.4575 -0.9961 1.5750 9 7 2.0447 -0.7409 1.1713 10 6 2.3356 0.1716 2.2851 11 1 3.3154 0.6257 2.1370 12 6 1.2670 1.2667 2.3414 13 6 1.5437 2.1778 3.5405 14 6 1.5593 1.3383 4.8200 15 7 2.5983 0.3058 4.7169 16 6 2.7360 -0.4306 5.9805 17 6 3.2586 0.5125 7.0660 18 6 3.4014 -0.2542 8.3824 19 16 4.0203 0.8613 9.6663 20 6 4.0862 -0.2504 11.0317 21 1 3.7882 -1.2807 10.9041 22 6 4.5211 0.1978 12.2712 23 7 4.8839 1.4535 12.4269 24 14 4.5837 -0.9789 13.7207 25 1 4.1202 -2.3219 13.2883 26 1 5.9785 -1.0737 14.2215 27 1 3.7016 -0.4766 14.8045 28 6 2.3283 -0.6097 3.6010 29 1 -0.3633 0.5771 0.8502 30 1 -0.3633 0.4479 -0.9250 31 1 -0.3633 -1.0250 0.0746 32 1 2.1389 -0.1271 -2.1002 33 1 1.4517 -1.6488 -1.4404 34 1 4.1942 -0.3888 -0.8728 35 1 3.8119 -2.1004 -1.2510 36 1 4.2639 -1.1442 2.6374 37 1 5.3425 -1.5624 1.2846 38 1 4.6239 0.0633 1.3801 39 1 1.2979 1.8534 1.4233 40 1 0.2830 0.8102 2.4489 41 1 2.5108 2.6641 3.4125 42 1 0.7623 2.9345 3.6105 43 1 0.5874 0.8635 4.9546 44 1 1.7701 1.9819 5.6740 45 1 3.4371 -1.2543 5.8465 46 1 1.7647 -0.8250 6.2788 47 1 2.5575 1.3363 7.2000 48 1 4.2299 0.9071 6.7678 49 1 4.1023 -1.0782 8.2485 50 1 2.4299 -0.6484 8.6804 51 1 5.1881 1.7666 13.2930 52 1 3.0978 -1.3811 3.5697 53 1 1.3529 -1.0755 3.7413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342650574.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:47:54 Heat of formation + Delta-G solvation = 3.465821 kcal Electronic energy + Delta-G solvation = -26457.706226 eV Core-core repulsion = 23069.017841 eV Total energy + Delta-G solvation = -3388.688385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.209 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.75433 -38.34170 -34.80707 -33.54083 -32.42501 -32.20972 -31.38088 -28.53445 -28.34620 -26.24177 -25.43689 -24.39547 -23.12682 -23.06723 -20.83935 -20.80917 -20.01004 -19.09119 -17.44259 -16.80113 -16.36618 -15.68650 -15.27021 -14.91707 -14.78269 -14.64454 -14.34645 -14.06129 -13.93943 -13.65902 -13.51518 -13.19321 -12.95113 -12.86029 -12.72484 -12.29446 -12.10584 -11.97881 -11.84504 -11.65814 -11.52084 -11.37651 -11.28291 -11.19948 -11.06271 -11.00480 -10.97190 -10.75975 -10.67680 -10.57025 -10.49415 -10.22492 -10.11875 -9.48194 -9.04258 -8.46452 -8.26557 -8.23621 -6.49451 -6.20504 -3.90158 3.22399 3.23471 3.31294 3.41674 3.63739 4.07432 4.25089 4.27286 4.34849 4.57239 4.64592 4.74712 4.82894 4.92119 5.00986 5.07772 5.12726 5.15371 5.16384 5.24775 5.30317 5.36348 5.36453 5.38170 5.41491 5.46135 5.50353 5.52420 5.56379 5.62312 5.65805 5.72064 5.74533 5.79680 5.81893 5.85930 5.91223 5.96840 5.99080 6.03261 6.07808 6.14466 6.18851 6.24092 6.40371 6.64375 6.79111 6.82782 6.88771 7.16472 7.21573 7.63290 8.39430 9.25923 10.87730 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.002056 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.930503 B =13614.218191 C =14092.912392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.069 3.931 3 H 0.057 0.943 4 C -0.126 4.126 5 C -0.139 4.139 6 C 0.070 3.930 7 H 0.083 0.917 8 C -0.182 4.182 9 N -0.519 5.519 10 C 0.073 3.927 11 H 0.070 0.930 12 C -0.124 4.124 13 C -0.115 4.115 14 C 0.051 3.949 15 N -0.538 5.538 16 C 0.063 3.937 17 C -0.093 4.093 18 C -0.112 4.112 19 S -0.133 6.133 20 C -0.514 4.514 21 H 0.072 0.928 22 C 0.070 3.930 23 N -0.870 5.870 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.065 3.935 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.031 0.969 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.032 0.968 47 H 0.065 0.935 48 H 0.073 0.927 49 H 0.059 0.941 50 H 0.057 0.943 51 H 0.266 0.734 52 H 0.079 0.921 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.947 -2.825 -28.653 29.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.039 4.039 3 H 0.075 0.925 4 C -0.164 4.164 5 C -0.177 4.177 6 C -0.038 4.038 7 H 0.101 0.899 8 C -0.239 4.239 9 N -0.244 5.244 10 C -0.035 4.035 11 H 0.088 0.912 12 C -0.161 4.161 13 C -0.154 4.154 14 C -0.077 4.077 15 N -0.262 5.262 16 C -0.066 4.066 17 C -0.132 4.132 18 C -0.261 4.261 19 S 0.095 5.905 20 C -0.663 4.663 21 H 0.090 0.910 22 C -0.139 4.139 23 N -0.506 5.506 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.063 4.063 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.050 0.950 47 H 0.083 0.917 48 H 0.092 0.908 49 H 0.078 0.922 50 H 0.076 0.924 51 H 0.076 0.924 52 H 0.097 0.903 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.548 -1.707 -28.482 29.274 hybrid contribution -0.385 -1.913 0.958 2.174 sum -6.933 -3.620 -27.523 28.613 Atomic orbital electron populations 1.21933 0.94041 1.02588 1.01474 1.22546 0.95962 0.96181 0.89247 0.92533 1.22752 0.96141 1.00340 0.97186 1.22873 0.97280 1.01690 0.95856 1.22390 0.88778 0.99181 0.93462 0.89871 1.22594 0.97811 1.01187 1.02297 1.63660 1.28326 1.26174 1.06227 1.21935 0.98840 0.92152 0.90581 0.91213 1.22004 0.99197 0.96532 0.98382 1.21576 1.02257 0.97544 0.94000 1.22161 0.92658 0.94372 0.98533 1.61857 1.46052 1.14351 1.03972 1.22142 0.99646 0.96386 0.88451 1.21283 1.02201 0.97648 0.92030 1.23230 1.02607 1.02090 0.98200 1.84624 1.85222 1.17391 1.03283 1.22736 1.50769 0.97511 0.95245 0.90954 1.25021 0.94734 0.95726 0.98412 1.70035 1.41678 1.14424 1.24420 0.86117 0.77917 0.80368 0.81145 1.19625 1.20580 1.20603 1.22181 1.00218 0.94307 0.89627 0.91900 0.92767 0.92031 0.91125 0.90696 0.91439 0.90945 0.90130 0.92334 0.92266 0.91752 0.91214 0.91149 0.91420 0.95083 0.89872 0.90971 0.95020 0.91685 0.90824 0.92187 0.92405 0.92401 0.90312 0.94535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.18 37.16 0.34 -0.68 16 2 C 0.07 0.53 2.37 -66.18 -0.16 0.37 16 3 H 0.06 0.46 6.31 -51.93 -0.33 0.13 16 4 C -0.13 -0.83 6.49 -24.60 -0.16 -0.99 16 5 C -0.14 -0.95 6.47 -24.91 -0.16 -1.11 16 6 C 0.07 0.57 3.86 -66.72 -0.26 0.32 16 7 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 8 C -0.18 -1.54 7.65 37.16 0.28 -1.25 16 9 N -0.52 -4.63 4.69 -207.57 -0.97 -5.61 16 10 C 0.07 0.71 1.69 -67.63 -0.11 0.59 16 11 H 0.07 0.74 5.16 -51.93 -0.27 0.47 16 12 C -0.12 -1.12 3.71 -26.61 -0.10 -1.22 16 13 C -0.12 -1.12 6.09 -26.65 -0.16 -1.29 16 14 C 0.05 0.59 5.29 -3.84 -0.02 0.57 16 15 N -0.54 -6.70 4.66 -234.68 -1.09 -7.79 16 16 C 0.06 0.87 4.96 -3.82 -0.02 0.86 16 17 C -0.09 -1.55 5.15 -26.73 -0.14 -1.69 16 18 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 19 S -0.13 -3.54 21.44 -107.50 -2.30 -5.85 16 20 C -0.51 -14.94 9.50 30.94 0.29 -14.65 16 21 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 22 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 23 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 24 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 C 0.06 0.72 4.47 -3.83 -0.02 0.70 16 29 H 0.06 0.47 5.27 -51.93 -0.27 0.20 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.50 8.06 -51.92 -0.42 0.08 16 34 H 0.07 0.46 7.83 -51.93 -0.41 0.06 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.78 4.50 -51.93 -0.23 0.55 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.53 6.59 -51.93 -0.34 0.18 16 39 H 0.06 0.53 5.92 -51.93 -0.31 0.22 16 40 H 0.07 0.66 6.50 -51.93 -0.34 0.33 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 1.05 6.21 -51.93 -0.32 0.72 16 45 H 0.07 0.98 7.99 -51.93 -0.41 0.57 16 46 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 47 H 0.06 1.09 6.43 -51.93 -0.33 0.76 16 48 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 49 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 50 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 51 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 52 H 0.08 0.88 5.50 -51.93 -0.29 0.59 16 53 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 395.28 15.07 5.96 5.96 Total: -1.00 -30.37 395.28 -12.71 -43.08 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -9.73 Total: -1.38 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -0.27 Total: -19.64 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -1.33 Total: -38.91 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.85 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.37 -12.71 -43.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342650574.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.544 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds