Wall clock time and date at job start Sat Apr 11 2020 01:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 110.42017 * 2 1 4 4 C 1.54907 * 110.37409 * 237.68855 * 2 1 3 5 5 C 1.55132 * 101.65423 * 204.10379 * 4 2 1 6 6 C 1.54319 * 103.01867 * 35.65170 * 5 4 2 7 7 H 1.09002 * 109.89008 * 97.12659 * 6 5 4 8 8 C 1.53009 * 110.02337 * 218.23606 * 6 5 4 9 9 N 1.47440 * 107.23637 * 337.71753 * 6 5 4 10 10 C 1.46896 * 111.00478 * 236.74260 * 9 6 5 11 11 H 1.09002 * 109.49910 * 38.88343 * 10 9 6 12 12 C 1.53120 * 109.50769 * 159.00193 * 10 9 6 13 13 C 1.53117 * 109.16191 * 177.59429 * 12 10 9 14 14 C 1.53036 * 109.28021 * 302.35104 * 13 12 10 15 15 N 1.46840 * 109.52509 * 59.17587 * 14 13 12 16 16 C 1.46902 * 111.00209 * 174.16323 * 15 14 13 17 17 C 1.53002 * 109.46853 * 294.21372 * 16 15 14 18 18 C 1.53004 * 109.47288 * 179.97438 * 17 16 15 19 19 S 1.80994 * 109.47073 * 179.97438 * 18 17 16 20 20 C 1.76202 * 99.99825 * 179.97438 * 19 18 17 21 21 H 1.08004 * 120.00052 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00132 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00112 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00266 * 179.72488 * 22 20 19 25 25 H 1.48510 * 109.46874 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47285 * 119.99710 * 24 22 20 27 27 H 1.48492 * 109.47377 * 240.00221 * 24 22 20 28 28 C 1.46845 * 111.20065 * 298.25852 * 15 14 13 29 29 H 1.08993 * 109.47241 * 304.16887 * 1 2 3 30 30 H 1.09005 * 109.46684 * 64.16506 * 1 2 3 31 31 H 1.09001 * 109.47132 * 184.16091 * 1 2 3 32 32 H 1.09004 * 110.99210 * 86.00596 * 4 2 1 33 33 H 1.09009 * 111.02221 * 322.21026 * 4 2 1 34 34 H 1.09001 * 110.70665 * 277.27280 * 5 4 2 35 35 H 1.08999 * 110.70937 * 154.03451 * 5 4 2 36 36 H 1.09000 * 109.46759 * 176.62115 * 8 6 5 37 37 H 1.09000 * 109.46724 * 296.61874 * 8 6 5 38 38 H 1.08998 * 109.46806 * 56.61879 * 8 6 5 39 39 H 1.08998 * 109.52259 * 297.50348 * 12 10 9 40 40 H 1.09005 * 109.51889 * 57.62477 * 12 10 9 41 41 H 1.09002 * 109.50013 * 62.28866 * 13 12 10 42 42 H 1.08992 * 109.49992 * 182.36638 * 13 12 10 43 43 H 1.09000 * 109.45748 * 299.15795 * 14 13 12 44 44 H 1.08997 * 109.46285 * 179.20042 * 14 13 12 45 45 H 1.08995 * 109.47238 * 174.21437 * 16 15 14 46 46 H 1.08995 * 109.47155 * 54.20674 * 16 15 14 47 47 H 1.08998 * 109.47264 * 59.99485 * 17 16 15 48 48 H 1.09003 * 109.47209 * 299.99856 * 17 16 15 49 49 H 1.08998 * 109.46485 * 59.99679 * 18 17 16 50 50 H 1.08995 * 109.46768 * 299.99964 * 18 17 16 51 51 H 0.96997 * 120.00095 * 180.02562 * 23 22 20 52 52 H 1.08998 * 109.46575 * 181.75480 * 28 15 14 53 53 H 1.08997 * 109.46595 * 301.72854 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 6 2.0694 -0.7762 -1.2273 5 6 3.4786 -1.1996 -0.7358 6 6 3.2535 -1.4808 0.7647 7 1 3.1055 -2.5489 0.9237 8 6 4.4575 -0.9961 1.5750 9 7 2.0447 -0.7409 1.1713 10 6 2.3356 0.1716 2.2851 11 1 3.3154 0.6257 2.1370 12 6 1.2670 1.2667 2.3414 13 6 1.5437 2.1778 3.5405 14 6 1.5593 1.3383 4.8200 15 7 2.5983 0.3058 4.7169 16 6 2.7360 -0.4306 5.9805 17 6 3.2586 0.5125 7.0660 18 6 3.4014 -0.2542 8.3824 19 16 4.0203 0.8613 9.6663 20 6 4.0862 -0.2504 11.0317 21 1 3.7882 -1.2807 10.9041 22 6 4.5211 0.1978 12.2712 23 7 4.8839 1.4535 12.4269 24 14 4.5837 -0.9789 13.7207 25 1 4.1202 -2.3219 13.2883 26 1 5.9785 -1.0737 14.2215 27 1 3.7016 -0.4766 14.8045 28 6 2.3283 -0.6097 3.6010 29 1 -0.3633 0.5771 0.8502 30 1 -0.3633 0.4479 -0.9250 31 1 -0.3633 -1.0250 0.0746 32 1 2.1389 -0.1271 -2.1002 33 1 1.4517 -1.6488 -1.4404 34 1 4.1942 -0.3888 -0.8728 35 1 3.8119 -2.1004 -1.2510 36 1 4.2639 -1.1442 2.6374 37 1 5.3425 -1.5624 1.2846 38 1 4.6239 0.0633 1.3801 39 1 1.2979 1.8534 1.4233 40 1 0.2830 0.8102 2.4489 41 1 2.5108 2.6641 3.4125 42 1 0.7623 2.9345 3.6105 43 1 0.5874 0.8635 4.9546 44 1 1.7701 1.9819 5.6740 45 1 3.4371 -1.2543 5.8465 46 1 1.7647 -0.8250 6.2788 47 1 2.5575 1.3363 7.2000 48 1 4.2299 0.9071 6.7678 49 1 4.1023 -1.0782 8.2485 50 1 2.4299 -0.6484 8.6804 51 1 5.1881 1.7666 13.2930 52 1 3.0978 -1.3811 3.5697 53 1 1.3529 -1.0755 3.7413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342650574.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:47:49 Heat of formation + Delta-G solvation = -14.034538 kcal Electronic energy + Delta-G solvation = -26458.465099 eV Core-core repulsion = 23069.017841 eV Total energy + Delta-G solvation = -3389.447257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.209 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.48012 -39.23217 -35.86919 -34.60906 -34.20013 -33.22895 -32.30113 -29.28975 -29.01410 -27.93428 -27.13006 -25.05188 -24.15206 -23.95221 -22.03107 -21.42386 -20.89875 -19.81684 -19.54842 -17.58538 -17.05959 -16.90228 -16.59767 -16.47653 -16.14216 -15.69060 -15.40998 -15.14575 -14.96272 -14.74275 -14.32233 -14.21099 -13.88682 -13.67991 -13.63538 -13.46585 -13.30770 -13.09431 -12.92031 -12.89018 -12.72042 -12.55121 -12.42527 -12.28602 -12.27166 -12.08544 -11.95525 -11.74577 -11.59709 -11.56553 -11.44588 -11.22138 -11.16754 -11.10039 -10.99492 -10.31519 -9.30106 -9.11919 -8.66722 -8.37747 -6.13848 1.31111 1.37929 1.49005 1.74048 2.27687 2.65938 2.96291 3.18753 3.33277 3.63135 3.73019 3.90116 3.94034 3.95022 4.00290 4.10351 4.17367 4.25715 4.31544 4.35251 4.41644 4.44671 4.47396 4.50825 4.53768 4.60114 4.68140 4.72124 4.74435 4.76292 4.82725 4.85253 4.89793 4.97749 4.98440 5.01248 5.04530 5.08230 5.14641 5.19595 5.20855 5.26705 5.32797 5.36115 5.39672 5.43317 5.48202 5.50597 6.05491 6.10456 6.18111 6.20279 6.33236 7.04457 8.71911 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.002056 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.930503 B =13614.218191 C =14092.912392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.066 3.934 3 H 0.056 0.944 4 C -0.122 4.122 5 C -0.135 4.135 6 C 0.067 3.933 7 H 0.079 0.921 8 C -0.175 4.175 9 N -0.527 5.527 10 C 0.080 3.920 11 H 0.063 0.937 12 C -0.117 4.117 13 C -0.111 4.111 14 C 0.048 3.952 15 N -0.542 5.542 16 C 0.073 3.927 17 C -0.079 4.079 18 C -0.087 4.087 19 S -0.197 6.197 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.013 3.987 23 N -0.907 5.907 24 Si 0.995 3.005 25 H -0.263 1.263 26 H -0.271 1.271 27 H -0.271 1.271 28 C 0.070 3.930 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.030 0.970 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.033 0.967 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.062 0.938 50 H 0.059 0.941 51 H 0.271 0.729 52 H 0.078 0.922 53 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.465 -3.765 -29.980 31.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.042 4.042 3 H 0.074 0.926 4 C -0.160 4.160 5 C -0.173 4.173 6 C -0.041 4.041 7 H 0.097 0.903 8 C -0.233 4.233 9 N -0.252 5.252 10 C -0.028 4.028 11 H 0.081 0.919 12 C -0.155 4.155 13 C -0.149 4.149 14 C -0.079 4.079 15 N -0.267 5.267 16 C -0.056 4.056 17 C -0.118 4.118 18 C -0.236 4.236 19 S 0.032 5.968 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.191 4.191 23 N -0.544 5.544 24 Si 0.817 3.183 25 H -0.187 1.187 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.058 4.058 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.051 0.949 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.081 0.919 50 H 0.078 0.922 51 H 0.080 0.920 52 H 0.096 0.904 53 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.071 -2.644 -29.830 30.770 hybrid contribution -0.241 -1.615 1.288 2.080 sum -7.312 -4.259 -28.541 29.769 Atomic orbital electron populations 1.21899 0.93635 1.02101 1.02021 1.22617 0.96243 0.96120 0.89194 0.92644 1.22746 0.95740 1.00423 0.97099 1.22847 0.97539 1.02181 0.94742 1.22414 0.88366 0.98795 0.94484 0.90322 1.22515 0.98335 1.00995 1.01428 1.63649 1.28723 1.26218 1.06612 1.21805 0.98714 0.92148 0.90162 0.91949 1.21956 0.98730 0.96243 0.98525 1.21551 1.02540 0.97597 0.93196 1.22199 0.92262 0.94187 0.99276 1.61836 1.46644 1.14599 1.03573 1.21946 0.99634 0.95716 0.88349 1.21143 1.01956 0.97731 0.90979 1.23147 1.02092 1.00931 0.97465 1.84634 1.86116 1.20464 1.05619 1.23067 1.51299 0.97725 0.96378 0.90998 1.26089 0.93889 0.97627 1.01528 1.70163 1.42291 1.16446 1.25474 0.84952 0.78373 0.78013 0.76937 1.18702 1.19597 1.19654 1.22170 0.99596 0.94214 0.89826 0.92354 0.91382 0.92841 0.89815 0.90681 0.91362 0.89997 0.91509 0.91601 0.92716 0.90543 0.91442 0.91644 0.89979 0.95184 0.91051 0.90415 0.94882 0.91871 0.91576 0.91928 0.92198 0.91963 0.90363 0.95435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.18 71.98 0.66 -1.09 16 2 C 0.07 0.90 2.37 45.39 0.11 1.00 16 3 H 0.06 0.78 6.31 -2.39 -0.02 0.76 16 4 C -0.12 -1.35 6.49 31.98 0.21 -1.15 16 5 C -0.13 -1.59 6.47 31.77 0.21 -1.39 16 6 C 0.07 1.03 3.86 45.26 0.17 1.20 16 7 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 8 C -0.18 -2.83 7.65 71.99 0.55 -2.27 16 9 N -0.53 -8.77 4.69 -810.63 -3.80 -12.57 16 10 C 0.08 1.47 1.69 44.97 0.08 1.55 16 11 H 0.06 1.26 5.16 -2.39 -0.01 1.25 16 12 C -0.12 -1.95 3.71 30.67 0.11 -1.84 16 13 C -0.11 -2.02 6.09 30.65 0.19 -1.84 16 14 C 0.05 1.11 5.29 86.33 0.46 1.56 16 15 N -0.54 -13.20 4.66 -896.40 -4.17 -17.38 16 16 C 0.07 1.99 4.96 86.30 0.43 2.42 16 17 C -0.08 -2.64 5.15 30.60 0.16 -2.49 16 18 C -0.09 -3.58 5.67 71.98 0.41 -3.17 16 19 S -0.20 -10.70 21.44 -56.49 -1.21 -11.91 16 20 C -0.54 -31.53 9.50 67.95 0.65 -30.89 16 21 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 22 C 0.01 0.78 5.49 84.86 0.47 1.24 16 23 N -0.91 -55.40 13.22 21.65 0.29 -55.11 16 24 Si 1.00 44.49 29.55 68.60 2.03 46.52 16 25 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 C 0.07 1.51 4.47 86.33 0.39 1.89 16 29 H 0.06 0.78 5.27 -2.39 -0.01 0.77 16 30 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.85 8.06 -2.38 -0.02 0.83 16 34 H 0.07 0.81 7.83 -2.39 -0.02 0.79 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 1.26 4.50 -2.39 -0.01 1.25 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.05 0.93 6.59 -2.39 -0.02 0.91 16 39 H 0.08 1.11 5.92 -2.39 -0.01 1.10 16 40 H 0.07 1.18 6.50 -2.38 -0.02 1.17 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.07 1.79 6.21 -2.39 -0.01 1.77 16 45 H 0.08 2.04 7.99 -2.39 -0.02 2.02 16 46 H 0.03 0.90 8.12 -2.39 -0.02 0.88 16 47 H 0.06 2.14 6.43 -2.39 -0.02 2.12 16 48 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 49 H 0.06 2.54 8.14 -2.40 -0.02 2.52 16 50 H 0.06 2.43 8.14 -2.40 -0.02 2.42 16 51 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 52 H 0.08 1.70 5.50 -2.39 -0.01 1.69 16 53 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -65.34 395.28 -0.78 -66.12 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.86 Total: 19.58 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 5.23 Total: -35.24 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -7.69 Total: -85.06 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: -10.70 SS G_CDS: -1.21 Total: -11.91 kcal Total: -65.34 -0.78 -66.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342650574.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.082 kcal (2) G-P(sol) polarization free energy of solvation -65.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds