Wall clock time and date at job start Sat Apr 11 2020 01:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.36726 * 2 1 4 4 C 1.54386 * 110.41004 * 237.52639 * 2 1 3 5 5 C 1.54259 * 105.05764 * 217.36694 * 4 2 1 6 6 C 1.54374 * 105.06056 * 359.97438 * 5 4 2 7 7 H 1.09002 * 110.41471 * 265.06615 * 6 5 4 8 8 C 1.53005 * 110.41164 * 142.63215 * 6 5 4 9 9 N 1.48551 * 104.59689 * 23.85427 * 6 5 4 10 10 C 1.46906 * 111.00079 * 200.95705 * 9 6 5 11 11 H 1.09006 * 109.53600 * 159.60088 * 10 9 6 12 12 C 1.53117 * 109.50065 * 39.50842 * 10 9 6 13 13 C 1.53120 * 109.15906 * 182.40482 * 12 10 9 14 14 C 1.53033 * 109.28107 * 57.65290 * 13 12 10 15 15 N 1.46853 * 109.52254 * 300.82156 * 14 13 12 16 16 C 1.46900 * 110.99883 * 185.83638 * 15 14 13 17 17 C 1.53002 * 109.47154 * 45.79062 * 16 15 14 18 18 C 1.52998 * 109.47336 * 179.97438 * 17 16 15 19 19 S 1.80998 * 109.47282 * 180.02562 * 18 17 16 20 20 C 1.76197 * 99.99915 * 180.02562 * 19 18 17 21 21 H 1.08006 * 120.00113 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00049 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99780 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00030 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47130 * 90.00254 * 24 22 20 26 26 H 1.48503 * 109.47067 * 209.99818 * 24 22 20 27 27 H 1.48493 * 109.47199 * 329.99847 * 24 22 20 28 28 C 1.46849 * 111.19782 * 61.74094 * 15 14 13 29 29 H 1.08999 * 109.47167 * 297.65056 * 1 2 3 30 30 H 1.09003 * 109.47129 * 57.64926 * 1 2 3 31 31 H 1.08997 * 109.47108 * 177.64719 * 1 2 3 32 32 H 1.08998 * 110.32278 * 336.26466 * 4 2 1 33 33 H 1.09002 * 110.32226 * 98.37303 * 4 2 1 34 34 H 1.09000 * 110.32070 * 118.90016 * 5 4 2 35 35 H 1.09001 * 110.32301 * 241.00196 * 5 4 2 36 36 H 1.09001 * 109.46705 * 287.60436 * 8 6 5 37 37 H 1.09004 * 109.46906 * 47.59870 * 8 6 5 38 38 H 1.08996 * 109.47333 * 167.60169 * 8 6 5 39 39 H 1.09005 * 109.52408 * 302.30494 * 12 10 9 40 40 H 1.08996 * 109.52520 * 62.43407 * 12 10 9 41 41 H 1.09005 * 109.50505 * 177.59322 * 13 12 10 42 42 H 1.09000 * 109.50151 * 297.70848 * 13 12 10 43 43 H 1.08996 * 109.46448 * 180.80436 * 14 13 12 44 44 H 1.09002 * 109.46033 * 60.83385 * 14 13 12 45 45 H 1.09004 * 109.46702 * 165.78996 * 16 15 14 46 46 H 1.08994 * 109.47408 * 285.79163 * 16 15 14 47 47 H 1.08994 * 109.46988 * 300.00043 * 17 16 15 48 48 H 1.09008 * 109.46907 * 59.99745 * 17 16 15 49 49 H 1.08996 * 109.47023 * 300.00468 * 18 17 16 50 50 H 1.09007 * 109.46583 * 59.99859 * 18 17 16 51 51 H 0.97003 * 119.99513 * 180.02562 * 23 22 20 52 52 H 1.09001 * 109.46346 * 58.27248 * 28 15 14 53 53 H 1.08997 * 109.46201 * 178.24496 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0684 -0.7769 -1.2207 5 6 3.3177 -1.5196 -0.7038 6 6 3.4294 -1.1285 0.7854 7 1 4.1079 -0.2840 0.9068 8 6 3.9066 -2.3215 1.6161 9 7 2.0487 -0.7442 1.1761 10 6 2.0578 0.1051 2.3747 11 1 1.1217 0.6604 2.4351 12 6 3.2303 1.0868 2.2966 13 6 3.2683 1.9270 3.5762 14 6 3.3893 0.9987 4.7868 15 7 2.2441 0.0799 4.8170 16 6 2.2538 -0.7333 6.0404 17 6 2.5355 0.1641 7.2471 18 6 2.5450 -0.6827 8.5214 19 16 2.8774 0.3790 9.9490 20 6 2.8331 -0.8202 11.2391 21 1 2.6406 -1.8572 11.0062 22 6 3.0447 -0.4323 12.5549 23 7 3.2779 0.8317 12.8389 24 14 2.9970 -1.7036 13.9227 25 1 4.3582 -2.2599 14.1290 26 1 2.5287 -1.0629 15.1779 27 1 2.0662 -2.7985 13.5486 28 6 2.2138 -0.7704 3.6201 29 1 -0.3633 0.4769 0.9103 30 1 -0.3633 0.5499 -0.8682 31 1 -0.3633 -1.0268 -0.0422 32 1 1.3235 -1.4897 -1.5744 33 1 2.3399 -0.0863 -2.0192 34 1 3.1860 -2.5970 -0.8039 35 1 4.2038 -1.1949 -1.2492 36 1 3.1020 -3.0523 1.6977 37 1 4.7672 -2.7814 1.1304 38 1 4.1903 -1.9807 2.6117 39 1 4.1636 0.5324 2.1971 40 1 3.1012 1.7406 1.4341 41 1 4.1265 2.5984 3.5453 42 1 2.3514 2.5109 3.6554 43 1 3.4022 1.5931 5.7004 44 1 4.3133 0.4251 4.7137 45 1 1.2838 -1.2149 6.1642 46 1 3.0303 -1.4944 5.9646 47 1 3.5054 0.6457 7.1233 48 1 1.7589 0.9253 7.3229 49 1 1.5749 -1.1640 8.6450 50 1 3.3213 -1.4442 8.4457 51 1 3.4260 1.1028 13.7585 52 1 3.1433 -1.3357 3.5526 53 1 1.3730 -1.4608 3.6863 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342650576.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:48:11 Heat of formation + Delta-G solvation = -3.001201 kcal Electronic energy + Delta-G solvation = -26417.132975 eV Core-core repulsion = 23028.164159 eV Total energy + Delta-G solvation = -3388.968816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.209 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.66905 -38.35000 -34.86161 -33.01136 -32.42799 -32.22619 -31.68366 -28.81282 -28.18322 -26.28244 -25.48059 -24.20756 -23.50324 -22.83609 -21.35846 -20.63649 -19.94283 -19.00639 -17.45341 -16.96823 -15.80542 -15.47610 -15.22669 -15.11056 -14.79406 -14.78540 -14.42933 -14.14093 -13.88219 -13.76333 -13.49409 -13.18002 -12.95357 -12.81126 -12.68108 -12.28739 -12.21099 -12.05540 -11.98083 -11.82290 -11.58722 -11.38972 -11.27086 -11.16051 -11.06159 -10.98616 -10.93165 -10.77803 -10.69329 -10.59419 -10.43483 -10.36486 -10.15482 -9.49582 -9.04067 -8.62605 -8.27994 -8.19447 -6.50620 -6.21067 -3.90972 3.22504 3.23462 3.30232 3.43271 3.63160 4.05906 4.23555 4.24643 4.39250 4.58329 4.62838 4.69262 4.84740 4.85618 4.99939 5.04030 5.10966 5.14864 5.19686 5.23084 5.29658 5.33210 5.37938 5.39019 5.42381 5.45071 5.47334 5.55475 5.55792 5.56418 5.65826 5.70305 5.75242 5.79031 5.80440 5.83900 5.88841 5.93213 5.95522 5.99247 6.06318 6.07432 6.19003 6.23391 6.36385 6.61913 6.70437 6.76121 6.83697 7.15550 7.19633 7.62412 8.38569 9.25258 10.87115 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.002029 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.958396 B =13796.346216 C =14052.902105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.058 3.942 3 H 0.052 0.948 4 C -0.120 4.120 5 C -0.121 4.121 6 C 0.046 3.954 7 H 0.066 0.934 8 C -0.143 4.143 9 N -0.496 5.496 10 C 0.080 3.920 11 H 0.088 0.912 12 C -0.154 4.154 13 C -0.112 4.112 14 C 0.046 3.954 15 N -0.538 5.538 16 C 0.063 3.937 17 C -0.100 4.100 18 C -0.112 4.112 19 S -0.134 6.134 20 C -0.515 4.515 21 H 0.072 0.928 22 C 0.070 3.930 23 N -0.870 5.870 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.061 3.939 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.030 0.970 45 H 0.075 0.925 46 H 0.031 0.969 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.061 0.939 50 H 0.057 0.943 51 H 0.267 0.733 52 H 0.044 0.956 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.751 -1.810 -29.631 29.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.050 4.050 3 H 0.070 0.930 4 C -0.158 4.158 5 C -0.159 4.159 6 C -0.062 4.062 7 H 0.084 0.916 8 C -0.200 4.200 9 N -0.220 5.220 10 C -0.029 4.029 11 H 0.106 0.894 12 C -0.193 4.193 13 C -0.150 4.150 14 C -0.082 4.082 15 N -0.263 5.263 16 C -0.066 4.066 17 C -0.139 4.139 18 C -0.261 4.261 19 S 0.095 5.905 20 C -0.663 4.663 21 H 0.090 0.910 22 C -0.139 4.139 23 N -0.506 5.506 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.067 4.067 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.048 0.952 45 H 0.093 0.907 46 H 0.049 0.951 47 H 0.086 0.914 48 H 0.093 0.907 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.077 0.923 52 H 0.062 0.938 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.307 -0.754 -29.287 29.326 hybrid contribution 1.020 -1.841 0.724 2.226 sum -0.286 -2.595 -28.563 28.682 Atomic orbital electron populations 1.21720 0.93770 1.02424 1.01487 1.22597 0.96114 0.95971 0.90322 0.92989 1.22348 0.97599 0.99054 0.96807 1.22348 0.97702 1.00999 0.94819 1.22852 0.90802 0.98035 0.94526 0.91640 1.21947 1.00944 0.97641 0.99482 1.65439 1.17582 1.36619 1.02405 1.21776 0.98631 0.92456 0.90032 0.89367 1.22319 0.99905 0.98656 0.98435 1.21524 1.02363 0.97610 0.93539 1.22245 0.91332 0.95247 0.99329 1.61891 1.42553 1.19957 1.01856 1.22151 1.01001 0.94795 0.88606 1.21440 1.02535 0.98117 0.91788 1.23227 1.02824 1.01685 0.98373 1.84603 1.93298 1.15162 0.97480 1.22690 1.55996 0.95018 0.92617 0.90985 1.25022 0.94676 0.96001 0.98172 1.70029 1.45526 1.15183 1.19821 0.86165 0.78499 0.80582 0.80284 1.20310 1.20763 1.19683 1.22221 1.01545 0.94431 0.88523 0.92479 0.92514 0.91868 0.90958 0.91655 0.91033 0.91680 0.91511 0.92520 0.92280 0.91281 0.92192 0.91608 0.91060 0.89306 0.95218 0.90680 0.95111 0.91444 0.90729 0.92068 0.92386 0.92344 0.93831 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.36 37.16 0.35 -0.65 16 2 C 0.06 0.45 2.74 -66.08 -0.18 0.27 16 3 H 0.05 0.41 6.66 -51.93 -0.35 0.07 16 4 C -0.12 -0.79 6.55 -25.35 -0.17 -0.96 16 5 C -0.12 -0.82 6.53 -25.35 -0.17 -0.99 16 6 C 0.05 0.37 2.42 -66.08 -0.16 0.21 16 7 H 0.07 0.55 5.05 -51.93 -0.26 0.28 16 8 C -0.14 -1.17 8.43 37.16 0.31 -0.86 16 9 N -0.50 -4.39 4.72 -206.43 -0.97 -5.36 16 10 C 0.08 0.78 2.28 -67.63 -0.15 0.62 16 11 H 0.09 0.95 7.08 -51.93 -0.37 0.58 16 12 C -0.15 -1.40 4.23 -26.61 -0.11 -1.51 16 13 C -0.11 -1.11 6.09 -26.65 -0.16 -1.27 16 14 C 0.05 0.55 4.85 -3.83 -0.02 0.53 16 15 N -0.54 -6.77 4.81 -234.67 -1.13 -7.90 16 16 C 0.06 0.89 5.27 -3.82 -0.02 0.87 16 17 C -0.10 -1.66 4.47 -26.73 -0.12 -1.78 16 18 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 19 S -0.13 -3.54 21.44 -107.50 -2.30 -5.84 16 20 C -0.51 -14.93 9.50 30.94 0.29 -14.64 16 21 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 22 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 23 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 24 Si 0.92 21.74 29.55 -169.99 -5.02 16.71 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.06 0.68 4.61 -3.83 -0.02 0.66 16 29 H 0.06 0.46 7.26 -51.93 -0.38 0.08 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.07 0.47 7.82 -51.93 -0.41 0.07 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.49 7.86 -51.93 -0.41 0.08 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.40 8.11 -51.93 -0.42 -0.02 16 38 H 0.06 0.54 5.63 -51.93 -0.29 0.25 16 39 H 0.07 0.64 5.84 -51.93 -0.30 0.33 16 40 H 0.06 0.51 6.88 -51.93 -0.36 0.15 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 1.15 5.81 -51.93 -0.30 0.85 16 44 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 47 H 0.07 1.12 6.21 -51.93 -0.32 0.79 16 48 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 49 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 50 H 0.06 1.18 8.14 -51.91 -0.42 0.76 16 51 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 52 H 0.04 0.49 4.68 -51.93 -0.24 0.25 16 53 H 0.08 0.92 8.12 -51.93 -0.42 0.49 16 LS Contribution 398.42 15.07 6.00 6.00 Total: -1.00 -30.23 398.42 -12.76 -42.99 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -9.86 Total: -1.47 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -0.21 Total: -19.66 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -1.37 Total: -38.73 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.23 -12.76 -42.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342650576.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.990 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds