Wall clock time and date at job start Sat Apr 11 2020 01:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.36726 * 2 1 4 4 C 1.54386 * 110.41004 * 237.52639 * 2 1 3 5 5 C 1.54259 * 105.05764 * 217.36694 * 4 2 1 6 6 C 1.54374 * 105.06056 * 359.97438 * 5 4 2 7 7 H 1.09002 * 110.41471 * 265.06615 * 6 5 4 8 8 C 1.53005 * 110.41164 * 142.63215 * 6 5 4 9 9 N 1.48551 * 104.59689 * 23.85427 * 6 5 4 10 10 C 1.46906 * 111.00079 * 200.95705 * 9 6 5 11 11 H 1.09006 * 109.53600 * 159.60088 * 10 9 6 12 12 C 1.53117 * 109.50065 * 39.50842 * 10 9 6 13 13 C 1.53120 * 109.15906 * 182.40482 * 12 10 9 14 14 C 1.53033 * 109.28107 * 57.65290 * 13 12 10 15 15 N 1.46853 * 109.52254 * 300.82156 * 14 13 12 16 16 C 1.46900 * 110.99883 * 185.83638 * 15 14 13 17 17 C 1.53002 * 109.47154 * 45.79062 * 16 15 14 18 18 C 1.52998 * 109.47336 * 179.97438 * 17 16 15 19 19 S 1.80998 * 109.47282 * 180.02562 * 18 17 16 20 20 C 1.76197 * 99.99915 * 180.02562 * 19 18 17 21 21 H 1.08006 * 120.00113 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00049 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99780 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00030 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47130 * 90.00254 * 24 22 20 26 26 H 1.48503 * 109.47067 * 209.99818 * 24 22 20 27 27 H 1.48493 * 109.47199 * 329.99847 * 24 22 20 28 28 C 1.46849 * 111.19782 * 61.74094 * 15 14 13 29 29 H 1.08999 * 109.47167 * 297.65056 * 1 2 3 30 30 H 1.09003 * 109.47129 * 57.64926 * 1 2 3 31 31 H 1.08997 * 109.47108 * 177.64719 * 1 2 3 32 32 H 1.08998 * 110.32278 * 336.26466 * 4 2 1 33 33 H 1.09002 * 110.32226 * 98.37303 * 4 2 1 34 34 H 1.09000 * 110.32070 * 118.90016 * 5 4 2 35 35 H 1.09001 * 110.32301 * 241.00196 * 5 4 2 36 36 H 1.09001 * 109.46705 * 287.60436 * 8 6 5 37 37 H 1.09004 * 109.46906 * 47.59870 * 8 6 5 38 38 H 1.08996 * 109.47333 * 167.60169 * 8 6 5 39 39 H 1.09005 * 109.52408 * 302.30494 * 12 10 9 40 40 H 1.08996 * 109.52520 * 62.43407 * 12 10 9 41 41 H 1.09005 * 109.50505 * 177.59322 * 13 12 10 42 42 H 1.09000 * 109.50151 * 297.70848 * 13 12 10 43 43 H 1.08996 * 109.46448 * 180.80436 * 14 13 12 44 44 H 1.09002 * 109.46033 * 60.83385 * 14 13 12 45 45 H 1.09004 * 109.46702 * 165.78996 * 16 15 14 46 46 H 1.08994 * 109.47408 * 285.79163 * 16 15 14 47 47 H 1.08994 * 109.46988 * 300.00043 * 17 16 15 48 48 H 1.09008 * 109.46907 * 59.99745 * 17 16 15 49 49 H 1.08996 * 109.47023 * 300.00468 * 18 17 16 50 50 H 1.09007 * 109.46583 * 59.99859 * 18 17 16 51 51 H 0.97003 * 119.99513 * 180.02562 * 23 22 20 52 52 H 1.09001 * 109.46346 * 58.27248 * 28 15 14 53 53 H 1.08997 * 109.46201 * 178.24496 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0684 -0.7769 -1.2207 5 6 3.3177 -1.5196 -0.7038 6 6 3.4294 -1.1285 0.7854 7 1 4.1079 -0.2840 0.9068 8 6 3.9066 -2.3215 1.6161 9 7 2.0487 -0.7442 1.1761 10 6 2.0578 0.1051 2.3747 11 1 1.1217 0.6604 2.4351 12 6 3.2303 1.0868 2.2966 13 6 3.2683 1.9270 3.5762 14 6 3.3893 0.9987 4.7868 15 7 2.2441 0.0799 4.8170 16 6 2.2538 -0.7333 6.0404 17 6 2.5355 0.1641 7.2471 18 6 2.5450 -0.6827 8.5214 19 16 2.8774 0.3790 9.9490 20 6 2.8331 -0.8202 11.2391 21 1 2.6406 -1.8572 11.0062 22 6 3.0447 -0.4323 12.5549 23 7 3.2779 0.8317 12.8389 24 14 2.9970 -1.7036 13.9227 25 1 4.3582 -2.2599 14.1290 26 1 2.5287 -1.0629 15.1779 27 1 2.0662 -2.7985 13.5486 28 6 2.2138 -0.7704 3.6201 29 1 -0.3633 0.4769 0.9103 30 1 -0.3633 0.5499 -0.8682 31 1 -0.3633 -1.0268 -0.0422 32 1 1.3235 -1.4897 -1.5744 33 1 2.3399 -0.0863 -2.0192 34 1 3.1860 -2.5970 -0.8039 35 1 4.2038 -1.1949 -1.2492 36 1 3.1020 -3.0523 1.6977 37 1 4.7672 -2.7814 1.1304 38 1 4.1903 -1.9807 2.6117 39 1 4.1636 0.5324 2.1971 40 1 3.1012 1.7406 1.4341 41 1 4.1265 2.5984 3.5453 42 1 2.3514 2.5109 3.6554 43 1 3.4022 1.5931 5.7004 44 1 4.3133 0.4251 4.7137 45 1 1.2838 -1.2149 6.1642 46 1 3.0303 -1.4944 5.9646 47 1 3.5054 0.6457 7.1233 48 1 1.7589 0.9253 7.3229 49 1 1.5749 -1.1640 8.6450 50 1 3.3213 -1.4442 8.4457 51 1 3.4260 1.1028 13.7585 52 1 3.1433 -1.3357 3.5526 53 1 1.3730 -1.4608 3.6863 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342650576.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:48:08 Heat of formation + Delta-G solvation = -20.407160 kcal Electronic energy + Delta-G solvation = -26417.887754 eV Core-core repulsion = 23028.164159 eV Total energy + Delta-G solvation = -3389.723595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.209 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -41.40577 -39.24009 -35.90245 -34.61048 -33.62471 -33.19890 -32.69255 -29.47193 -28.98126 -27.90882 -27.18586 -24.81563 -24.61056 -23.70851 -22.30540 -21.46572 -20.83895 -19.74629 -19.55092 -17.74485 -16.90189 -16.74870 -16.51162 -16.23942 -16.00875 -15.78583 -15.62774 -15.04591 -14.95938 -14.87741 -14.56891 -14.14458 -13.87753 -13.68825 -13.53426 -13.47036 -13.25759 -13.13145 -13.00823 -12.92564 -12.75887 -12.61765 -12.51184 -12.45284 -12.29116 -12.01662 -11.98077 -11.75910 -11.56910 -11.53486 -11.46463 -11.26799 -11.19029 -11.12882 -11.04102 -10.32396 -9.32228 -9.19220 -8.67266 -8.37960 -6.14190 1.30789 1.38865 1.48122 1.73298 2.27498 2.67429 2.96103 3.19775 3.32098 3.62413 3.72886 3.80827 3.92580 3.95611 4.02509 4.09013 4.13909 4.20858 4.29413 4.31954 4.39935 4.43444 4.46530 4.50652 4.57784 4.64680 4.66849 4.67865 4.72486 4.76193 4.80451 4.81572 4.89074 4.93698 5.00314 5.04594 5.05399 5.10101 5.13199 5.17005 5.21231 5.25819 5.28932 5.30851 5.34048 5.39124 5.42033 5.50119 6.04256 6.08181 6.12493 6.17585 6.26420 7.04152 8.71426 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.002029 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.958396 B =13796.346216 C =14052.902105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.052 0.948 4 C -0.117 4.117 5 C -0.118 4.118 6 C 0.044 3.956 7 H 0.066 0.934 8 C -0.139 4.139 9 N -0.505 5.505 10 C 0.087 3.913 11 H 0.077 0.923 12 C -0.146 4.146 13 C -0.108 4.108 14 C 0.045 3.955 15 N -0.543 5.543 16 C 0.074 3.926 17 C -0.086 4.086 18 C -0.087 4.087 19 S -0.196 6.196 20 C -0.538 4.538 21 H 0.072 0.928 22 C 0.014 3.986 23 N -0.907 5.907 24 Si 0.995 3.005 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.263 1.263 28 C 0.064 3.936 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.028 0.972 45 H 0.077 0.923 46 H 0.034 0.966 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.062 0.938 50 H 0.060 0.940 51 H 0.271 0.729 52 H 0.046 0.954 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.532 -2.750 -31.141 31.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.052 4.052 3 H 0.070 0.930 4 C -0.155 4.155 5 C -0.156 4.156 6 C -0.064 4.064 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.229 5.229 10 C -0.022 4.022 11 H 0.096 0.904 12 C -0.185 4.185 13 C -0.146 4.146 14 C -0.082 4.082 15 N -0.268 5.268 16 C -0.056 4.056 17 C -0.125 4.125 18 C -0.237 4.237 19 S 0.033 5.967 20 C -0.686 4.686 21 H 0.090 0.910 22 C -0.191 4.191 23 N -0.543 5.543 24 Si 0.817 3.183 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.188 1.188 28 C -0.063 4.063 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.047 0.953 45 H 0.096 0.904 46 H 0.052 0.948 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.081 0.919 50 H 0.079 0.921 51 H 0.080 0.920 52 H 0.063 0.937 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.088 -1.689 -30.820 30.885 hybrid contribution 0.939 -1.540 1.106 2.116 sum -0.149 -3.229 -29.713 29.889 Atomic orbital electron populations 1.21693 0.93659 1.02121 1.01588 1.22663 0.96223 0.96020 0.90306 0.92976 1.22344 0.97431 0.99158 0.96550 1.22345 0.98342 1.01030 0.93916 1.22893 0.90268 0.97860 0.95369 0.91645 1.21902 1.01059 0.97581 0.99077 1.65434 1.18280 1.36680 1.02514 1.21619 0.98401 0.92275 0.89896 0.90436 1.22248 0.99598 0.98421 0.98234 1.21494 1.02685 0.97383 0.93032 1.22253 0.90977 0.95229 0.99761 1.61894 1.43032 1.20072 1.01778 1.21967 1.01187 0.94257 0.88175 1.21307 1.02393 0.97741 0.91048 1.23148 1.02703 1.00894 0.96921 1.84607 1.93689 1.17964 1.00480 1.23035 1.56494 0.95293 0.93761 0.90982 1.26088 0.93811 0.98318 1.00886 1.70160 1.46166 1.17332 1.20677 0.85005 0.79006 0.77704 0.76628 1.19238 1.19862 1.18759 1.22212 1.01262 0.94394 0.88475 0.93544 0.91130 0.92451 0.90886 0.90358 0.91105 0.90496 0.92406 0.91367 0.93369 0.91122 0.91167 0.90374 0.91529 0.90661 0.95340 0.90447 0.94804 0.91408 0.91460 0.91947 0.92134 0.91959 0.93660 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.36 71.98 0.67 -1.11 16 2 C 0.06 0.77 2.74 45.07 0.12 0.89 16 3 H 0.05 0.73 6.66 -2.38 -0.02 0.71 16 4 C -0.12 -1.29 6.55 31.49 0.21 -1.08 16 5 C -0.12 -1.36 6.53 31.49 0.21 -1.16 16 6 C 0.04 0.63 2.42 45.06 0.11 0.74 16 7 H 0.07 0.96 5.05 -2.39 -0.01 0.95 16 8 C -0.14 -2.11 8.43 71.98 0.61 -1.50 16 9 N -0.50 -8.30 4.72 -807.03 -3.81 -12.10 16 10 C 0.09 1.61 2.28 44.96 0.10 1.71 16 11 H 0.08 1.61 7.08 -2.38 -0.02 1.60 16 12 C -0.15 -2.42 4.23 30.67 0.13 -2.29 16 13 C -0.11 -2.01 6.09 30.65 0.19 -1.82 16 14 C 0.05 1.06 4.85 86.32 0.42 1.47 16 15 N -0.54 -13.36 4.81 -896.36 -4.31 -17.67 16 16 C 0.07 2.01 5.27 86.30 0.46 2.47 16 17 C -0.09 -2.86 4.47 30.59 0.14 -2.72 16 18 C -0.09 -3.58 5.67 71.98 0.41 -3.18 16 19 S -0.20 -10.61 21.44 -56.49 -1.21 -11.82 16 20 C -0.54 -31.55 9.50 67.95 0.65 -30.90 16 21 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 22 C 0.01 0.80 5.49 84.86 0.47 1.26 16 23 N -0.91 -55.30 13.22 21.65 0.29 -55.01 16 24 Si 0.99 44.41 29.55 68.60 2.03 46.44 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 28 C 0.06 1.38 4.61 86.32 0.40 1.78 16 29 H 0.05 0.72 7.26 -2.39 -0.02 0.70 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.83 8.09 -2.39 -0.02 0.81 16 32 H 0.07 0.81 7.82 -2.39 -0.02 0.79 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.83 7.86 -2.39 -0.02 0.82 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 0.86 8.11 -2.38 -0.02 0.84 16 38 H 0.05 0.83 5.63 -2.39 -0.01 0.82 16 39 H 0.07 1.18 5.84 -2.38 -0.01 1.16 16 40 H 0.07 1.05 6.88 -2.39 -0.02 1.03 16 41 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.08 1.94 5.81 -2.39 -0.01 1.93 16 44 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 46 H 0.03 0.91 8.08 -2.39 -0.02 0.89 16 47 H 0.07 2.25 6.21 -2.39 -0.01 2.24 16 48 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 49 H 0.06 2.54 8.14 -2.40 -0.02 2.52 16 50 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 51 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 52 H 0.05 0.98 4.68 -2.39 -0.01 0.97 16 53 H 0.07 1.61 8.12 -2.39 -0.02 1.59 16 Total: -1.00 -65.02 398.42 -0.89 -65.90 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.85 Total: 19.68 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 5.27 Total: -35.42 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -7.83 Total: -84.78 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -10.61 SS G_CDS: -1.21 Total: -11.82 kcal Total: -65.02 -0.89 -65.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342650576.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.497 kcal (2) G-P(sol) polarization free energy of solvation -65.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds